Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014598

Physical Location & Seq

Genomic Coordinates Reverse (-)

83238560 .. 83242599

Gene Structure 4040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG587200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGGAATTGTTGGTGCAGCAGGTGGGGGGAGCCTTCAGTTCACAGAGTCTCATCCAATGCAAAGTCAGAATCCCCAAAAGACCAGAGCCCCTCAGTGAACCCTAGGGAGGATGATAGTAAGCTACCATCCAATCCTGAAGAAGTTGAGATCCTACGTCGTGATTCAGCTGCAAATCCATTGATTGCATTCACATTCAATGAACTAAAGATAATCACTGCAAATTTTAGGCAAGATCGTTTGTTGGGTGGTGGAGGATTTGGAAGTGTTTATAAAGGTTTCATTACGGAGGATTTAAGAGAGGGGCTCTCTTCCCTTCCAGTAGCCGTCAAGGTTCATGATGGCGATAACAGTTATCAAGGTCACAGAGAATGGCTGGACTTTCATGGGCTGATTCTTAAGACTCTATCTCACATGCGTATTCCCTCCGTTTTCCCAGGAGTGCTGCTTCCTTTGCCTTGGTCCGTAAGGATGAAGATTGCTTTTGGTGCAGCTAAAGGACTTGCCTTTCTCCATGATGCAGAGAAACCTGTTATCTATCGTGATTTCAAAACATCTAATATTCTGTTGGATCTGGAGTACAATGCAAAGCTTTCTGATTTTGGCCTTGCGAAAGATGGACCAGTTGGGGACAAATCCCATGTTTCCACACGCATAATGGGGACGTATGGATATGCTGCACCTGAGTATATCTTGACCGGCCATCTTACTCCTAGAAGTGATGTTTATAGCTTTGGTGTTGTTCTTCTTGAACTTCTGACCGGAAGAAAATCTTTAGACAAGTCACGGCCAGCCCGAGAACAAAACCTTACTGATTGGGCTCTCCCCATGCTCAAAGAGAAGAAGAAATTGCTCAACATCATTGATCCAAGACTAGAAGGAGAATATCCTATTAAAGGAGTGCACAAGGCTGCCATGCTGGTCTACCATTGCTTGAACAGGAACCCAAAGGCAAGGCCTCTGATGCGCGATATTGTAGATACTTTGGAGCCTCTGCAGGTCAGTGATGAAGTTTCTGCTGAAAAAACTGTAACAGAGATTATTCAGTTCCCGGATGGTGAAATTAGAAGAAAAGAAGAGTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

362

Amino Acids

40.59

Weight (kDa)

7.16

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	156 - 329	5.7e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	160 - 327	2.2e-26	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56460
fragaria_vesca	FvH4_3g45820
malus_domestica	MD03G1002700.v1.1 MD11G1002600.v1.1
prunus_persica	Prupe.6G002400_v2.0.a1
pyrus_communis	pycom03g00260 pycom11g00240
rosa_chinensis	RchiOBHm_Chr5g0083901
rosa_laevigata	RLG00000037063
rosa_multiflora	Rmu_sc0001137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00000700
rosa_rugosa	Rorug05G0487400.1 Rorug05G0487500.1
rosa_samantha	Rh5AG540300 Rh5CG587200 Rh5DG573800
rosa_wichuraiana	Rw5G050230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AarI	CACCTGC	1 cut(s)	12
Acc36I	ACCTGC	2 cut(s)	12, 988
AccI	GTMKAC	1 cut(s)	924
AccII	CGCG	1 cut(s)	969
AclWI	GGATC	3 cut(s)	145, 579, 860
AcoI	YGGCCR	2 cut(s)	700, 788
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	2 cut(s)	21, 159
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	2 cut(s)	109, 896
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	199, 550, 752, 937
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	5 cut(s)	124, 170, 494, 592, 732
AluI	AGCT	5 cut(s)	124, 170, 494, 592, 732
Alw21I	GWGCWC	1 cut(s)	906
Alw26I	GTCTC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	902
AlwI	GGATC	3 cut(s)	145, 579, 860
Ama87I	CYCGRG	1 cut(s)	795
AoxI	GGCC	4 cut(s)	604, 700, 788, 956
ApaLI	GTGCAC	1 cut(s)	902
ApeKI	GCWGC	6 cut(s)	18, 170, 445, 491, 677, 911
ApoI	RAATTY	1 cut(s)	223
AspA2I	CCTAGG	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	969
AspS9I	GGNCC	2 cut(s)	462, 620
AsuC2I	CCSGG	1 cut(s)	1052
AsuHPI	GGTGA	1 cut(s)	1070
AvaI	CYCGRG	1 cut(s)	795
AvaII	GGWCC	2 cut(s)	462, 620
AvrII	CCTAGG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	906
BanII	GRGCYC	3 cut(s)	92, 309, 823
Bbv12I	GWGCWC	1 cut(s)	906
BbvI	GCAGC	6 cut(s)	30, 157, 432, 503, 664, 898
BccI	CCATC	5 cut(s)	136, 335, 611, 711, 1049
BceAI	ACGGC	2 cut(s)	311, 803
BciT130I	CCWGG	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	1052
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	3 cut(s)	105, 714, 875
BfmI	CTRYAG	1 cut(s)	995
BfrI	CTTAAG	1 cut(s)	398
BfuAI	ACCTGC	2 cut(s)	12, 988
BisI	GCNGC	6 cut(s)	19, 171, 446, 492, 678, 912
BlnI	CCTAGG	1 cut(s)	104
BlsI	GCNGC	6 cut(s)	20, 172, 447, 493, 679, 913
Bme1390I	CCNGG	2 cut(s)	438, 1052
Bme18I	GGWCC	2 cut(s)	462, 620
BmeT110I	CYCGRG	1 cut(s)	795
BmgT120I	GGNCC	2 cut(s)	462, 620
BmiI	GGNNCC	3 cut(s)	33, 944, 990
BmrFI	CCNGG	2 cut(s)	438, 1052
BmsI	GCATC	2 cut(s)	508, 954
BplI	GAGNNNNNCTC	4 cut(s)	291, 323, 293, 325
BpmI	CTGGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	1052
BsaJI	CCNNGG	3 cut(s)	104, 436, 458
BsaWI	WCCGGW	1 cut(s)	761
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 896
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	320, 623
Bse3DI	GCAATG	1 cut(s)	928
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	104, 436, 458
BseGI	GGATG	5 cut(s)	53, 118, 128, 477, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	109, 896
BseMI	GCAATG	1 cut(s)	928
BseMII	CTCAG	2 cut(s)	108, 675
BseNI	ACTGG	2 cut(s)	320, 623
BseSI	GKGCMC	1 cut(s)	906
BseXI	GCAGC	6 cut(s)	30, 157, 432, 503, 664, 898
BsgI	GTGCAG	3 cut(s)	37, 510, 663
Bsh1236I	CGCG	1 cut(s)	969
BshFI	GGCC	4 cut(s)	606, 702, 790, 958
BsiHKAI	GWGCWC	1 cut(s)	906
BsiHKCI	CYCGRG	1 cut(s)	795
BsiSI	CCGG	3 cut(s)	699, 762, 1052
BslFI	GGGAC	2 cut(s)	644, 676
BslI	CCNNNNNNNGG	2 cut(s)	109, 896
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	644, 676
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	4 cut(s)	606, 702, 790, 958
BsoBI	CYCGRG	1 cut(s)	795
Bsp1286I	GDGCHC	4 cut(s)	92, 309, 823, 906
Bsp143I	GATC	4 cut(s)	150, 235, 571, 865
BspANI	GGCC	4 cut(s)	606, 702, 790, 958
BspCNI	CTCAG	2 cut(s)	107, 676
BspFNI	CGCG	1 cut(s)	969
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	33, 944, 990
BspMAI	CTGCAG	1 cut(s)	999
BspMI	ACCTGC	2 cut(s)	12, 988
BspPI	GGATC	3 cut(s)	145, 579, 860
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	928
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	320, 623
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	3 cut(s)	104, 436, 458
BssMI	GATC	4 cut(s)	150, 235, 571, 865
BssT1I	CCWWGG	2 cut(s)	104, 458
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	353, 1030
Bst6I	CTCTTC	2 cut(s)	316, 1071
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	792
BstDEI	CTNAG	2 cut(s)	94, 684
BstENI	CCTNNNNNAGG	1 cut(s)	894
BstF5I	GGATG	5 cut(s)	53, 118, 128, 477, 1060
BstFNI	CGCG	1 cut(s)	969
BstHHI	GCGC	1 cut(s)	969
BstKTI	GATC	4 cut(s)	153, 238, 574, 868
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	4 cut(s)	150, 235, 571, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	454, 488, 964
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	2 cut(s)	436, 1050
BstSFI	CTRYAG	1 cut(s)	995
BstSLI	GKGCMC	1 cut(s)	906
BstUI	CGCG	1 cut(s)	969
BstV1I	GCAGC	6 cut(s)	30, 157, 432, 503, 664, 898
BstX2I	RGATCY	2 cut(s)	150, 571
BstYI	RGATCY	2 cut(s)	150, 571
BsuRI	GGCC	4 cut(s)	606, 702, 790, 958
BtsCI	GGATG	5 cut(s)	53, 118, 128, 477, 1060
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	102, 216, 1009
BveI	ACCTGC	2 cut(s)	12, 988
Cac8I	GCNNGC	1 cut(s)	792
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	969
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	2 cut(s)	462, 620
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	7 cut(s)	338, 386, 415, 515, 641, 829, 916
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	2 cut(s)	94, 684
DpnI	GATC	4 cut(s)	152, 237, 573, 867
DpnII	GATC	4 cut(s)	150, 235, 571, 865
EaeI	YGGCCR	2 cut(s)	700, 788
Eam1104I	CTCTTC	2 cut(s)	316, 1071
EarI	CTCTTC	2 cut(s)	316, 1071
Eco130I	CCWWGG	2 cut(s)	104, 458
Eco147I	AGGCCT	1 cut(s)	958
Eco24I	GRGCYC	3 cut(s)	92, 309, 823
Eco47I	GGWCC	2 cut(s)	462, 620
Eco57I	CTGAAG	2 cut(s)	21, 159
Eco88I	CYCGRG	1 cut(s)	795
EcoNI	CCTNNNNNAGG	1 cut(s)	894
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	104, 458
EcoT38I	GRGCYC	3 cut(s)	92, 309, 823
ErhI	CCWWGG	2 cut(s)	104, 458
FaeI	CATG	7 cut(s)	341, 389, 418, 518, 644, 832, 919
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	2 cut(s)	644, 676
FatI	CATG	7 cut(s)	337, 385, 414, 514, 640, 828, 915
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	6 cut(s)	19, 171, 446, 492, 678, 912
FokI	GGATG	5 cut(s)	40, 115, 125, 484, 1067
FriOI	GRGCYC	3 cut(s)	92, 309, 823
Fsp4HI	GCNGC	6 cut(s)	19, 171, 446, 492, 678, 912
FspBI	CTAG	3 cut(s)	105, 714, 875
GlaI	GCGC	1 cut(s)	968
GluI	GCNGC	6 cut(s)	19, 171, 446, 492, 678, 912
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	4 cut(s)	606, 702, 790, 958
HapII	CCGG	3 cut(s)	699, 762, 1052
HhaI	GCGC	1 cut(s)	969
Hin1II	CATG	7 cut(s)	341, 389, 418, 518, 644, 832, 919
Hin6I	GCGC	1 cut(s)	967
HinP1I	GCGC	1 cut(s)	967
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	5 cut(s)	48, 71, 164, 394, 403
HpaII	CCGG	3 cut(s)	699, 762, 1052
HphI	GGTGA	1 cut(s)	1070
Hpy166II	GTNNAC	4 cut(s)	43, 100, 904, 925
Hpy188I	TCNGA	4 cut(s)	70, 598, 759, 963
Hpy188III	TCNNGA	7 cut(s)	137, 161, 338, 542, 575, 694, 749
Hpy8I	GTNNAC	4 cut(s)	43, 100, 904, 925
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	45, 326, 872
HpyCH4III	ACNGT	2 cut(s)	353, 1030
HpyCH4IV	ACGT	2 cut(s)	157, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	454, 488, 964
HpyF3I	CTNAG	2 cut(s)	94, 684
HpySE526I	ACGT	2 cut(s)	157, 665
Hsp92II	CATG	7 cut(s)	341, 389, 418, 518, 644, 832, 919
HspAI	GCGC	1 cut(s)	967
Kzo9I	GATC	4 cut(s)	150, 235, 571, 865
LmnI	GCTCC	2 cut(s)	31, 988
Lsp1109I	GCAGC	6 cut(s)	30, 157, 432, 503, 664, 898
LweI	GCATC	2 cut(s)	508, 954
MaeI	CTAG	3 cut(s)	105, 714, 875
MaeII	ACGT	2 cut(s)	157, 665
MaeIII	GTNAC	3 cut(s)	362, 783, 1030
MalI	GATC	4 cut(s)	152, 237, 573, 867
MboI	GATC	4 cut(s)	150, 235, 571, 865
MboII	GAAGA	9 cut(s)	152, 303, 487, 737, 777, 853, 856, 1080, 1088
MflI	RGATCY	2 cut(s)	150, 571
MhlI	GDGCHC	4 cut(s)	92, 309, 823, 906
MluCI	AATT	4 cut(s)	7, 223, 848, 1062
MlyI	GAGTC	2 cut(s)	57, 397
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	8 cut(s)	103, 103, 248, 283, 295, 436, 969, 1002
MseI	TTAA	3 cut(s)	296, 399, 894
MspA1I	CMGCKG	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	3 cut(s)	699, 762, 1052
MspR9I	CCNGG	2 cut(s)	438, 1052
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	969
MwoI	GCNNNNNNNGC	3 cut(s)	454, 488, 964
NciI	CCSGG	1 cut(s)	1052
NdeII	GATC	4 cut(s)	150, 235, 571, 865
NlaIII	CATG	7 cut(s)	341, 389, 418, 518, 644, 832, 919
NlaIV	GGNNCC	3 cut(s)	33, 944, 990
NmuCI	GTSAC	2 cut(s)	362, 783
NspI	RCATGY	1 cut(s)	418
PagI	TCATGA	1 cut(s)	337
PaqCI	CACCTGC	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	958
PcsI	WCGNNNNNNNCGW	1 cut(s)	793
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	71, 164, 394
PfoI	TCCNGGA	1 cut(s)	1050
PkrI	GCNGC	6 cut(s)	20, 172, 447, 493, 679, 913
PleI	GAGTC	2 cut(s)	56, 397
PpsI	GAGTC	2 cut(s)	56, 397
PsiI	TTATAA	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	33, 944, 990
PspPI	GGNCC	2 cut(s)	462, 620
PstI	CTGCAG	1 cut(s)	999
PsuI	RGATCY	2 cut(s)	150, 571
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SaqAI	TTAA	3 cut(s)	296, 399, 894
SatI	GCNGC	6 cut(s)	19, 171, 446, 492, 678, 912
Sau3AI	GATC	4 cut(s)	150, 235, 571, 865
Sau96I	GGNCC	2 cut(s)	462, 620
SchI	GAGTC	2 cut(s)	57, 397
ScrFI	CCNGG	2 cut(s)	438, 1052
SduI	GDGCHC	4 cut(s)	92, 309, 823, 906
SfaNI	GCATC	2 cut(s)	508, 954
SfcI	CTRYAG	1 cut(s)	995
SinI	GGWCC	2 cut(s)	462, 620
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	7, 223, 848, 1062
SseBI	AGGCCT	1 cut(s)	958
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	3 cut(s)	105, 714, 875
StuI	AGGCCT	1 cut(s)	958
StyD4I	CCNGG	2 cut(s)	436, 1050
StyI	CCWWGG	2 cut(s)	104, 458
TaaI	ACNGT	2 cut(s)	353, 1030
TaiI	ACGT	2 cut(s)	160, 668
TasI	AATT	4 cut(s)	7, 223, 848, 1062
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	3 cut(s)	71, 164, 394
Tru1I	TTAA	3 cut(s)	296, 399, 894
Tru9I	TTAA	3 cut(s)	296, 399, 894
TscAI	CASTG	3 cut(s)	102, 223, 1009
TseFI	GTSAC	2 cut(s)	362, 783
TseI	GCWGC	6 cut(s)	18, 170, 445, 491, 677, 911
Tsp45I	GTSAC	2 cut(s)	362, 783
TspDTI	ATGAA	6 cut(s)	216, 271, 326, 374, 488, 1023
TspGWI	ACGGA	3 cut(s)	302, 418, 454
TspRI	CASTG	3 cut(s)	102, 223, 1009
Vha464I	CTTAAG	1 cut(s)	398
VneI	GTGCAC	1 cut(s)	902
VpaK11BI	GGWCC	2 cut(s)	462, 620
XagI	CCTNNNNNAGG	1 cut(s)	894
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XmaJI	CCTAGG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	924
XspI	CTAG	3 cut(s)	105, 714, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.