Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014598

Physical Location & Seq

Genomic Coordinates Reverse (-)

89571420 .. 89575961

Gene Structure 4542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35801

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGGAATTGTTGGTGCAGCAGGTGGGGGGAGCCTTCAGTTCACAGAGTCTCATCCAATGCAAAGTCAGAATCCCCAAAAGTCCAGAGCCCCTCAGTGAACCCTAGGGAGGATGATAGTAAGCTGCCATCCAATCCTGAAGAAGTTGAGATCCTACGTCGTGATTCAGCTGCAAATCCATTGATCGCATTCACATTCAATGAACTAAAGATAATCACTGCAAATTTTAGGCAAGATCGTTTGTTGGGTGGTGGAGGATTTGGAAGTGTTTATAAAGGTTTCATTACGGAGGATTTAAGAGAGGGACTCTCTTCCCTTCCAGTAGCCGTCAAGGTTCATGACGGCGATAACAGTTATCAAGGTCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCTCATCCAAATTTGGTAAAACTCATTGGATATTGCTGTGAGGACAAGCAACGGGTGCTGATATATGAGTATATGGCTCGGGGTAGTGTGGAAAACAATTTATTTTCAAGAGTGCTGCTTCCTTTGCCTTGGTCCGTAAGGATGAAGATTGCTTTTGGTGCAGCTAAAGGGCTTGCCTTTCTCCATGATGCAGAGAAACCTGTTATCTATCGTGATTTCAAAACATCTAATATTCTGTTGGATCTGGACTACAATGCAAAGCTTTCTGACTTTGGCCTTGCGAAAGATGGACCAGTTGGGGACAAATCTCATGTTTCCACACGCATAATGGGGACGTATGGATATGCTGCACCTGAGTATATCTTGACCGGCCATCTTACTCCTAGAAGTGATGTTTATAGCTTTGGTGTTGTTCTTCTTGAACTTCTGACTGGAAGAAAATCTTTAGAAAAGTCACGGCCAGCCCGAGAACAAAACCTTACTGATTGGGCTCTCCCCATGCTCAAAGAGAAGAAGAAATTGCTCAACATCATTGATCCAAGACTAGAAGGAGAATATCCTATTAAAGGAGTGCACAAGGCTGCCATGCTGGTCTACCATTGCTTGAACAGGAACCCAAAGGCAAGGCCTCTGATGCGCGATATTGTAGATACTTTGGAGCCTCTGCAGGTCAGTGATGAAGTTTCTGCTGAAAAAACTGTAACAGAGATTATTCAGTTCCCTGATGGTGAAATTAGAAGAAAAGAAGAGTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

387

Amino Acids

43.52

Weight (kDa)

7.12

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 352	2.5e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	78 - 354	2.4e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56460
fragaria_vesca	FvH4_3g45820
malus_domestica	MD03G1002700.v1.1 MD11G1002600.v1.1
prunus_persica	Prupe.6G002400_v2.0.a1
pyrus_communis	pycom03g00260 pycom11g00240
rosa_chinensis	RchiOBHm_Chr5g0083901
rosa_laevigata	RLG00000037063
rosa_multiflora	Rmu_sc0001137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00000700
rosa_rugosa	Rorug05G0487400.1 Rorug05G0487500.1
rosa_samantha	Rh5AG540300 Rh5CG587200 Rh5DG573800
rosa_wichuraiana	Rw5G050230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AarI	CACCTGC	1 cut(s)	12
Acc36I	ACCTGC	2 cut(s)	12, 1063
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	1 cut(s)	1044
AclWI	GGATC	3 cut(s)	145, 654, 935
AcoI	YGGCCR	2 cut(s)	775, 863
AcsI	RAATTY	2 cut(s)	223, 415
AcuI	CTGAAG	2 cut(s)	21, 159
AfiI	CCNNNNNNNGG	2 cut(s)	109, 971
AgsI	TTSAA	5 cut(s)	199, 513, 625, 827, 1012
AluBI	AGCT	6 cut(s)	124, 170, 403, 569, 667, 807
AluI	AGCT	6 cut(s)	124, 170, 403, 569, 667, 807
Alw21I	GWGCWC	1 cut(s)	981
Alw26I	GTCTC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	977
AlwI	GGATC	3 cut(s)	145, 654, 935
Ama87I	CYCGRG	2 cut(s)	483, 870
AoxI	GGCC	4 cut(s)	679, 775, 863, 1031
ApaLI	GTGCAC	1 cut(s)	977
ApeKI	GCWGC	8 cut(s)	18, 124, 170, 400, 520, 566, 752, 986
ApoI	RAATTY	2 cut(s)	223, 415
AspA2I	CCTAGG	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	1044
AspS9I	GGNCC	2 cut(s)	537, 695
AsuHPI	GGTGA	1 cut(s)	1145
AvaI	CYCGRG	2 cut(s)	483, 870
AvaII	GGWCC	2 cut(s)	537, 695
AvrII	CCTAGG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	981
BanII	GRGCYC	2 cut(s)	92, 898
Bbv12I	GWGCWC	1 cut(s)	981
BbvI	GCAGC	8 cut(s)	30, 111, 157, 412, 507, 578, 739, 973
BccI	CCATC	4 cut(s)	136, 686, 786, 1124
BceAI	ACGGC	3 cut(s)	311, 358, 878
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	3 cut(s)	105, 789, 950
BfmI	CTRYAG	1 cut(s)	1070
BfuAI	ACCTGC	2 cut(s)	12, 1063
BisI	GCNGC	8 cut(s)	19, 125, 171, 401, 521, 567, 753, 987
BlnI	CCTAGG	1 cut(s)	104
BlsI	GCNGC	8 cut(s)	20, 126, 172, 402, 522, 568, 754, 988
Bme18I	GGWCC	2 cut(s)	537, 695
BmeT110I	CYCGRG	2 cut(s)	483, 870
BmgT120I	GGNCC	2 cut(s)	537, 695
BmiI	GGNNCC	3 cut(s)	33, 1019, 1065
BmsI	GCATC	2 cut(s)	583, 1029
BplI	GAGNNNNNCTC	4 cut(s)	291, 323, 293, 325
BsaJI	CCNNGG	2 cut(s)	104, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 971
Bse118I	RCCGGY	1 cut(s)	773
Bse1I	ACTGG	3 cut(s)	320, 698, 841
Bse3DI	GCAATG	1 cut(s)	1003
BseDI	CCNNGG	2 cut(s)	104, 533
BseGI	GGATG	5 cut(s)	53, 118, 128, 409, 552
BseLI	CCNNNNNNNGG	2 cut(s)	109, 971
BseMI	GCAATG	1 cut(s)	1003
BseMII	CTCAG	2 cut(s)	108, 750
BseNI	ACTGG	3 cut(s)	320, 698, 841
BseSI	GKGCMC	1 cut(s)	981
BseXI	GCAGC	8 cut(s)	30, 111, 157, 412, 507, 578, 739, 973
BsgI	GTGCAG	3 cut(s)	37, 585, 738
Bsh1236I	CGCG	1 cut(s)	1044
BshFI	GGCC	4 cut(s)	681, 777, 865, 1033
BsiHKAI	GWGCWC	1 cut(s)	981
BsiHKCI	CYCGRG	2 cut(s)	483, 870
BsiSI	CCGG	1 cut(s)	774
BslFI	GGGAC	3 cut(s)	318, 719, 751
BslI	CCNNNNNNNGG	2 cut(s)	109, 971
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	3 cut(s)	318, 719, 751
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	4 cut(s)	681, 777, 865, 1033
BsoBI	CYCGRG	2 cut(s)	483, 870
Bsp1286I	GDGCHC	3 cut(s)	92, 898, 981
Bsp143I	GATC	5 cut(s)	150, 183, 235, 646, 940
BspANI	GGCC	4 cut(s)	681, 777, 865, 1033
BspCNI	CTCAG	2 cut(s)	107, 751
BspFNI	CGCG	1 cut(s)	1044
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	33, 1019, 1065
BspMAI	CTGCAG	1 cut(s)	1074
BspMI	ACCTGC	2 cut(s)	12, 1063
BspPI	GGATC	3 cut(s)	145, 654, 935
BsrDI	GCAATG	1 cut(s)	1003
BsrFI	RCCGGY	1 cut(s)	773
BsrI	ACTGG	3 cut(s)	320, 698, 841
BssAI	RCCGGY	1 cut(s)	773
BssECI	CCNNGG	2 cut(s)	104, 533
BssMI	GATC	5 cut(s)	150, 183, 235, 646, 940
BssT1I	CCWWGG	2 cut(s)	104, 533
Bst4CI	ACNGT	2 cut(s)	353, 1105
Bst6I	CTCTTC	2 cut(s)	316, 1146
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	378, 579, 867
BstDEI	CTNAG	2 cut(s)	94, 759
BstENI	CCTNNNNNAGG	1 cut(s)	969
BstF5I	GGATG	5 cut(s)	53, 118, 128, 409, 552
BstFNI	CGCG	1 cut(s)	1044
BstHHI	GCGC	1 cut(s)	1044
BstKTI	GATC	5 cut(s)	153, 186, 238, 649, 943
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	5 cut(s)	150, 183, 235, 646, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	460, 529, 563, 1039
BstSFI	CTRYAG	1 cut(s)	1070
BstSLI	GKGCMC	1 cut(s)	981
BstUI	CGCG	1 cut(s)	1044
BstV1I	GCAGC	8 cut(s)	30, 111, 157, 412, 507, 578, 739, 973
BstX2I	RGATCY	2 cut(s)	150, 646
BstYI	RGATCY	2 cut(s)	150, 646
BsuRI	GGCC	4 cut(s)	681, 777, 865, 1033
BtsCI	GGATG	5 cut(s)	53, 118, 128, 409, 552
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	102, 216, 1084
BveI	ACCTGC	2 cut(s)	12, 1063
Cac8I	GCNNGC	3 cut(s)	378, 579, 867
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	1044
Cfr10I	RCCGGY	1 cut(s)	773
Cfr13I	GGNCC	2 cut(s)	537, 695
CviAII	CATG	5 cut(s)	338, 590, 716, 904, 991
DdeI	CTNAG	2 cut(s)	94, 759
DpnI	GATC	5 cut(s)	152, 185, 237, 648, 942
DpnII	GATC	5 cut(s)	150, 183, 235, 646, 940
EaeI	YGGCCR	2 cut(s)	775, 863
Eam1104I	CTCTTC	2 cut(s)	316, 1146
EarI	CTCTTC	2 cut(s)	316, 1146
Eco130I	CCWWGG	2 cut(s)	104, 533
Eco147I	AGGCCT	1 cut(s)	1033
Eco24I	GRGCYC	2 cut(s)	92, 898
Eco47I	GGWCC	2 cut(s)	537, 695
Eco57I	CTGAAG	2 cut(s)	21, 159
Eco88I	CYCGRG	2 cut(s)	483, 870
EcoNI	CCTNNNNNAGG	1 cut(s)	969
EcoT14I	CCWWGG	2 cut(s)	104, 533
EcoT38I	GRGCYC	2 cut(s)	92, 898
ErhI	CCWWGG	2 cut(s)	104, 533
FaeI	CATG	5 cut(s)	341, 593, 719, 907, 994
FalI	AAGNNNNNCTT	2 cut(s)	832, 864
FaqI	GGGAC	3 cut(s)	318, 719, 751
FatI	CATG	5 cut(s)	337, 589, 715, 903, 990
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	8 cut(s)	19, 125, 171, 401, 521, 567, 753, 987
FokI	GGATG	5 cut(s)	40, 115, 125, 396, 559
FriOI	GRGCYC	2 cut(s)	92, 898
Fsp4HI	GCNGC	8 cut(s)	19, 125, 171, 401, 521, 567, 753, 987
FspBI	CTAG	3 cut(s)	105, 789, 950
GlaI	GCGC	1 cut(s)	1043
GluI	GCNGC	8 cut(s)	19, 125, 171, 401, 521, 567, 753, 987
HaeIII	GGCC	4 cut(s)	681, 777, 865, 1033
HapII	CCGG	1 cut(s)	774
HhaI	GCGC	1 cut(s)	1044
Hin1II	CATG	5 cut(s)	341, 593, 719, 907, 994
Hin6I	GCGC	1 cut(s)	1042
HinP1I	GCGC	1 cut(s)	1042
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	4 cut(s)	48, 71, 164, 306
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	1 cut(s)	1145
Hpy166II	GTNNAC	4 cut(s)	43, 100, 979, 1000
Hpy188I	TCNGA	4 cut(s)	70, 673, 834, 1038
Hpy188III	TCNNGA	9 cut(s)	85, 137, 161, 338, 513, 617, 650, 769, 824
Hpy8I	GTNNAC	4 cut(s)	43, 100, 979, 1000
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	45, 326, 947
HpyCH4III	ACNGT	2 cut(s)	353, 1105
HpyCH4IV	ACGT	2 cut(s)	157, 740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	460, 529, 563, 1039
HpyF3I	CTNAG	2 cut(s)	94, 759
HpySE526I	ACGT	2 cut(s)	157, 740
Hsp92II	CATG	5 cut(s)	341, 593, 719, 907, 994
HspAI	GCGC	1 cut(s)	1042
Kzo9I	GATC	5 cut(s)	150, 183, 235, 646, 940
LmnI	GCTCC	2 cut(s)	31, 1063
Lsp1109I	GCAGC	8 cut(s)	30, 111, 157, 412, 507, 578, 739, 973
LweI	GCATC	2 cut(s)	583, 1029
MaeI	CTAG	3 cut(s)	105, 789, 950
MaeII	ACGT	2 cut(s)	157, 740
MaeIII	GTNAC	3 cut(s)	362, 858, 1105
MalI	GATC	5 cut(s)	152, 185, 237, 648, 942
MboI	GATC	5 cut(s)	150, 183, 235, 646, 940
MboII	GAAGA	9 cut(s)	152, 303, 562, 812, 852, 928, 931, 1155, 1163
MflI	RGATCY	2 cut(s)	150, 646
MhlI	GDGCHC	3 cut(s)	92, 898, 981
MluCI	AATT	6 cut(s)	7, 223, 415, 502, 923, 1137
MlyI	GAGTC	2 cut(s)	57, 300
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	8 cut(s)	103, 103, 248, 283, 295, 439, 1044, 1077
MseI	TTAA	2 cut(s)	296, 969
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	774
Mva1269I	GAATGC	1 cut(s)	188
MvnI	CGCG	1 cut(s)	1044
MwoI	GCNNNNNNNGC	4 cut(s)	460, 529, 563, 1039
NdeII	GATC	5 cut(s)	150, 183, 235, 646, 940
NlaIII	CATG	5 cut(s)	341, 593, 719, 907, 994
NlaIV	GGNNCC	3 cut(s)	33, 1019, 1065
NmuCI	GTSAC	2 cut(s)	362, 858
PagI	TCATGA	1 cut(s)	337
PaqCI	CACCTGC	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	1033
PcsI	WCGNNNNNNNCGW	1 cut(s)	868
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	71, 164
PkrI	GCNGC	8 cut(s)	20, 126, 172, 402, 522, 568, 754, 988
PleI	GAGTC	2 cut(s)	56, 300
PpsI	GAGTC	2 cut(s)	56, 300
PsiI	TTATAA	1 cut(s)	273
PspN4I	GGNNCC	3 cut(s)	33, 1019, 1065
PspPI	GGNCC	2 cut(s)	537, 695
PstI	CTGCAG	1 cut(s)	1074
PsuI	RGATCY	2 cut(s)	150, 646
PvuII	CAGCTG	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	296, 969
SatI	GCNGC	8 cut(s)	19, 125, 171, 401, 521, 567, 753, 987
Sau3AI	GATC	5 cut(s)	150, 183, 235, 646, 940
Sau96I	GGNCC	2 cut(s)	537, 695
SchI	GAGTC	2 cut(s)	57, 300
SduI	GDGCHC	3 cut(s)	92, 898, 981
SfaNI	GCATC	2 cut(s)	583, 1029
SfcI	CTRYAG	1 cut(s)	1070
SinI	GGWCC	2 cut(s)	537, 695
Sse9I	AATT	6 cut(s)	7, 223, 415, 502, 923, 1137
SseBI	AGGCCT	1 cut(s)	1033
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	3 cut(s)	105, 789, 950
StuI	AGGCCT	1 cut(s)	1033
StyI	CCWWGG	2 cut(s)	104, 533
TaaI	ACNGT	2 cut(s)	353, 1105
TaiI	ACGT	2 cut(s)	160, 743
TasI	AATT	6 cut(s)	7, 223, 415, 502, 923, 1137
TfiI	GAWTC	2 cut(s)	71, 164
Tru1I	TTAA	2 cut(s)	296, 969
Tru9I	TTAA	2 cut(s)	296, 969
TscAI	CASTG	3 cut(s)	102, 223, 1084
TseFI	GTSAC	2 cut(s)	362, 858
TseI	GCWGC	8 cut(s)	18, 124, 170, 400, 520, 566, 752, 986
Tsp45I	GTSAC	2 cut(s)	362, 858
TspDTI	ATGAA	5 cut(s)	216, 271, 326, 563, 1098
TspGWI	ACGGA	2 cut(s)	302, 529
TspRI	CASTG	3 cut(s)	102, 223, 1084
VneI	GTGCAC	1 cut(s)	977
VpaK11BI	GGWCC	2 cut(s)	537, 695
XagI	CCTNNNNNAGG	1 cut(s)	969
XapI	RAATTY	2 cut(s)	223, 415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XmaJI	CCTAGG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	999
XspI	CTAG	3 cut(s)	105, 789, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.