Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014598

Physical Location & Seq

Genomic Coordinates Forward (+)

1143466 .. 1147849

Gene Structure 4384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGGAATTGTTGGTGCAGCAGGTGGGGGAGCCTTCAGTTCACAGAGTCTCATCCAATGCAAAGTCAGATTACAGTTGGAACTTTTGATTCTAATGATCATGCTCTGTTTTGGATCCTCATGTATAGACTCTTAACTTTCTTTTCAGAATCCCCAAAAGACCAGAGCCCCTCAGTGAACCCTAGGGAGGATGATAGTAAGCTACCATCCAATCCTGAAGAAGTTGAGATCCTACGTCGTGATTCAGCTGCAAATCCATTGATCGCATTCACATTCAATGAACTAAAGATAATCACTGCAAATTTTAGGCAAGATCGTTTGTTGGGTGGTGGAGGATTTGGAAGTGTTTATAAAGAAGTGCTTCTTCCTTTGCCTTGGTCCGTAAGGATGAAGATTGCGTTTGGTGCAGCTAAAGGACTTGCTTTTCTCCATGATGCAGAGAAACCTGTTATCTATCGTGATTTCAAAACATCTAATATTCTGTTGGATCTGGACTACAATGCAAAGCTTTCTGACTTTGGCCTTGCGAAAGATGGACCAGTTGGGGACAAATCTCATGTTTCTACACGCATAATGGGGACGTATGGATATGCTGCACCTGAGTATATCTTGACCGGCCATCTTACTCCTAGAAGTGATGTTTATAGCTTTGGTGTTGTTCTTCTTGAACTTCTGACTGGAAGAAAATCTTTAGACAAGTCACGGCCAGCCCGAGAACAAAACCTTACTGATTGGGCTCTCCCCTTGCTCAAAGAGAAGAAGAAATTGCTCAACATCATTGACCCAAGACTAGAAGGAGAATATCCTATTAAAGGGGTGCACAAGGCTGCCATGCTTGTCTACCATTGCTTGAACAGGAACCCAAAGGCAAGGCCTCTGATGCGCGATATTGTAGATACTTTGGAGCCTCTGCAGGTCAATGATGAAGTTTCTACTGAAAAAACTGTAACAGAGATTATTCAGTTCCCGGATGGTGAAATTAGAAGAAAAGAAGAGTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

334

Amino Acids

37.8

Weight (kDa)

6.41

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	128 - 301	7.7e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	132 - 299	2.2e-26	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56460
fragaria_vesca	FvH4_3g45820
malus_domestica	MD03G1002700.v1.1 MD11G1002600.v1.1
prunus_persica	Prupe.6G002400_v2.0.a1
pyrus_communis	pycom03g00260 pycom11g00240
rosa_chinensis	RchiOBHm_Chr5g0083901
rosa_laevigata	RLG00000037063
rosa_multiflora	Rmu_sc0001137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00000700
rosa_rugosa	Rorug05G0487400.1 Rorug05G0487500.1
rosa_samantha	Rh5AG540300 Rh5CG587200 Rh5DG573800
rosa_wichuraiana	Rw5G050230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AarI	CACCTGC	1 cut(s)	12
Acc36I	ACCTGC	2 cut(s)	12, 904
AccI	GTMKAC	1 cut(s)	840
AccII	CGCG	1 cut(s)	885
AclWI	GGATC	4 cut(s)	109, 122, 223, 495
AcoI	YGGCCR	2 cut(s)	616, 704
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	2 cut(s)	20, 237
AfiI	CCNNNNNNNGG	2 cut(s)	187, 812
AgsI	TTSAA	4 cut(s)	277, 466, 668, 853
AluBI	AGCT	5 cut(s)	202, 248, 410, 508, 648
AluI	AGCT	5 cut(s)	202, 248, 410, 508, 648
Alw21I	GWGCWC	1 cut(s)	822
Alw26I	GTCTC	1 cut(s)	54
Alw44I	GTGCAC	1 cut(s)	818
AlwI	GGATC	4 cut(s)	109, 122, 223, 495
Ama87I	CYCGRG	1 cut(s)	711
AoxI	GGCC	4 cut(s)	520, 616, 704, 872
ApaLI	GTGCAC	1 cut(s)	818
ApeKI	GCWGC	5 cut(s)	18, 248, 407, 593, 827
ApoI	RAATTY	1 cut(s)	301
Asp700I	GAANNNNTTC	1 cut(s)	360
AspA2I	CCTAGG	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	885
AspS9I	GGNCC	2 cut(s)	378, 536
AsuC2I	CCSGG	1 cut(s)	968
AsuHPI	GGTGA	1 cut(s)	986
AvaI	CYCGRG	1 cut(s)	711
AvaII	GGWCC	2 cut(s)	378, 536
AvrII	CCTAGG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	822
BamHI	GGATCC	1 cut(s)	114
BanII	GRGCYC	2 cut(s)	170, 739
Bbv12I	GWGCWC	1 cut(s)	822
BbvI	GCAGC	5 cut(s)	30, 235, 419, 580, 814
BccI	CCATC	4 cut(s)	214, 527, 627, 965
BceAI	ACGGC	1 cut(s)	719
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	968
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	3 cut(s)	183, 630, 791
BfmI	CTRYAG	1 cut(s)	911
BfuAI	ACCTGC	2 cut(s)	12, 904
BisI	GCNGC	5 cut(s)	19, 249, 408, 594, 828
BlnI	CCTAGG	1 cut(s)	182
BlsI	GCNGC	5 cut(s)	20, 250, 409, 595, 829
Bme1390I	CCNGG	1 cut(s)	968
Bme18I	GGWCC	2 cut(s)	378, 536
BmeT110I	CYCGRG	1 cut(s)	711
BmgT120I	GGNCC	2 cut(s)	378, 536
BmiI	GGNNCC	4 cut(s)	32, 116, 860, 906
BmrFI	CCNGG	1 cut(s)	968
BmsI	GCATC	2 cut(s)	424, 870
BpuMI	CCSGG	1 cut(s)	968
BsaJI	CCNNGG	2 cut(s)	182, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 812
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	2 cut(s)	539, 682
Bse3DI	GCAATG	1 cut(s)	844
BseDI	CCNNGG	2 cut(s)	182, 374
BseGI	GGATG	5 cut(s)	52, 196, 206, 393, 976
BseLI	CCNNNNNNNGG	2 cut(s)	187, 812
BseMI	GCAATG	1 cut(s)	844
BseMII	CTCAG	2 cut(s)	186, 591
BseNI	ACTGG	2 cut(s)	539, 682
BseSI	GKGCMC	1 cut(s)	822
BseXI	GCAGC	5 cut(s)	30, 235, 419, 580, 814
BsgI	GTGCAG	3 cut(s)	37, 426, 579
Bsh1236I	CGCG	1 cut(s)	885
BshFI	GGCC	4 cut(s)	522, 618, 706, 874
BsiHKAI	GWGCWC	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	711
BsiSI	CCGG	2 cut(s)	615, 968
BslFI	GGGAC	2 cut(s)	560, 592
BslI	CCNNNNNNNGG	2 cut(s)	187, 812
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	2 cut(s)	560, 592
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	4 cut(s)	522, 618, 706, 874
BsoBI	CYCGRG	1 cut(s)	711
Bsp1286I	GDGCHC	3 cut(s)	170, 739, 822
Bsp143I	GATC	6 cut(s)	97, 114, 228, 261, 313, 487
BspANI	GGCC	4 cut(s)	522, 618, 706, 874
BspCNI	CTCAG	2 cut(s)	185, 592
BspFNI	CGCG	1 cut(s)	885
BspLI	GGNNCC	4 cut(s)	32, 116, 860, 906
BspMAI	CTGCAG	1 cut(s)	915
BspMI	ACCTGC	2 cut(s)	12, 904
BspPI	GGATC	4 cut(s)	109, 122, 223, 495
BsrDI	GCAATG	1 cut(s)	844
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	539, 682
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	2 cut(s)	182, 374
BssMI	GATC	6 cut(s)	97, 114, 228, 261, 313, 487
BssT1I	CCWWGG	2 cut(s)	182, 374
Bst4CI	ACNGT	2 cut(s)	76, 946
Bst6I	CTCTTC	1 cut(s)	987
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	2 cut(s)	172, 600
BstENI	CCTNNNNNAGG	1 cut(s)	810
BstF5I	GGATG	5 cut(s)	52, 196, 206, 393, 976
BstFNI	CGCG	1 cut(s)	885
BstHHI	GCGC	1 cut(s)	885
BstKTI	GATC	6 cut(s)	100, 117, 231, 264, 316, 490
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	6 cut(s)	97, 114, 228, 261, 313, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 880
BstSCI	CCNGG	1 cut(s)	966
BstSFI	CTRYAG	1 cut(s)	911
BstSLI	GKGCMC	1 cut(s)	822
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	5 cut(s)	30, 235, 419, 580, 814
BstX2I	RGATCY	3 cut(s)	114, 228, 487
BstYI	RGATCY	3 cut(s)	114, 228, 487
BsuRI	GGCC	4 cut(s)	522, 618, 706, 874
BtsCI	GGATG	5 cut(s)	52, 196, 206, 393, 976
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	180, 294
BveI	ACCTGC	2 cut(s)	12, 904
Cac8I	GCNNGC	1 cut(s)	708
CfoI	GCGC	1 cut(s)	885
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	378, 536
CviAII	CATG	5 cut(s)	101, 121, 431, 557, 832
DdeI	CTNAG	2 cut(s)	172, 600
DpnI	GATC	6 cut(s)	99, 116, 230, 263, 315, 489
DpnII	GATC	6 cut(s)	97, 114, 228, 261, 313, 487
EaeI	YGGCCR	2 cut(s)	616, 704
Eam1104I	CTCTTC	1 cut(s)	987
EarI	CTCTTC	1 cut(s)	987
Eco130I	CCWWGG	2 cut(s)	182, 374
Eco147I	AGGCCT	1 cut(s)	874
Eco24I	GRGCYC	2 cut(s)	170, 739
Eco47I	GGWCC	2 cut(s)	378, 536
Eco57I	CTGAAG	2 cut(s)	20, 237
Eco88I	CYCGRG	1 cut(s)	711
EcoNI	CCTNNNNNAGG	1 cut(s)	810
EcoT14I	CCWWGG	2 cut(s)	182, 374
EcoT38I	GRGCYC	2 cut(s)	170, 739
ErhI	CCWWGG	2 cut(s)	182, 374
FaeI	CATG	5 cut(s)	104, 124, 434, 560, 835
FalI	AAGNNNNNCTT	6 cut(s)	345, 377, 348, 380, 673, 705
FaqI	GGGAC	2 cut(s)	560, 592
FatI	CATG	5 cut(s)	100, 120, 430, 556, 831
FbaI	TGATCA	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	840
Fnu4HI	GCNGC	5 cut(s)	19, 249, 408, 594, 828
FokI	GGATG	5 cut(s)	39, 193, 203, 400, 983
FriOI	GRGCYC	2 cut(s)	170, 739
Fsp4HI	GCNGC	5 cut(s)	19, 249, 408, 594, 828
FspBI	CTAG	3 cut(s)	183, 630, 791
GlaI	GCGC	1 cut(s)	884
GluI	GCNGC	5 cut(s)	19, 249, 408, 594, 828
HaeIII	GGCC	4 cut(s)	522, 618, 706, 874
HapII	CCGG	2 cut(s)	615, 968
HhaI	GCGC	1 cut(s)	885
Hin1II	CATG	5 cut(s)	104, 124, 434, 560, 835
Hin6I	GCGC	1 cut(s)	883
HinP1I	GCGC	1 cut(s)	883
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	5 cut(s)	47, 89, 129, 149, 242
HpaII	CCGG	2 cut(s)	615, 968
HphI	GGTGA	1 cut(s)	986
Hpy166II	GTNNAC	4 cut(s)	42, 178, 820, 841
Hpy188I	TCNGA	5 cut(s)	69, 148, 514, 675, 879
Hpy188III	TCNNGA	6 cut(s)	215, 239, 458, 491, 610, 665
Hpy8I	GTNNAC	4 cut(s)	42, 178, 820, 841
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	2 cut(s)	44, 788
HpyCH4III	ACNGT	2 cut(s)	76, 946
HpyCH4IV	ACGT	2 cut(s)	235, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 880
HpyF3I	CTNAG	2 cut(s)	172, 600
HpySE526I	ACGT	2 cut(s)	235, 581
Hsp92II	CATG	5 cut(s)	104, 124, 434, 560, 835
HspAI	GCGC	1 cut(s)	883
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	6 cut(s)	97, 114, 228, 261, 313, 487
LmnI	GCTCC	2 cut(s)	30, 904
Lsp1109I	GCAGC	5 cut(s)	30, 235, 419, 580, 814
LweI	GCATC	2 cut(s)	424, 870
MaeI	CTAG	3 cut(s)	183, 630, 791
MaeII	ACGT	2 cut(s)	235, 581
MaeIII	GTNAC	2 cut(s)	699, 946
MalI	GATC	6 cut(s)	99, 116, 230, 263, 315, 489
MboI	GATC	6 cut(s)	97, 114, 228, 261, 313, 487
MboII	GAAGA	9 cut(s)	230, 356, 403, 653, 693, 769, 772, 996, 1004
MflI	RGATCY	3 cut(s)	114, 228, 487
MhlI	GDGCHC	3 cut(s)	170, 739, 822
MluCI	AATT	4 cut(s)	7, 301, 764, 978
MlyI	GAGTC	2 cut(s)	56, 123
MmeI	TCCRAC	2 cut(s)	58, 465
MnlI	CCTC	6 cut(s)	128, 181, 181, 326, 885, 918
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	2 cut(s)	134, 810
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	2 cut(s)	615, 968
MspR9I	CCNGG	1 cut(s)	968
Mva1269I	GAATGC	1 cut(s)	266
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	2 cut(s)	404, 880
NciI	CCSGG	1 cut(s)	968
NdeII	GATC	6 cut(s)	97, 114, 228, 261, 313, 487
NlaIII	CATG	5 cut(s)	104, 124, 434, 560, 835
NlaIV	GGNNCC	4 cut(s)	32, 116, 860, 906
NmuCI	GTSAC	1 cut(s)	699
PaqCI	CACCTGC	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	874
PcsI	WCGNNNNNNNCGW	1 cut(s)	709
PctI	GAATGC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	89, 149, 242
PfoI	TCCNGGA	1 cut(s)	966
PkrI	GCNGC	5 cut(s)	20, 250, 409, 595, 829
PleI	GAGTC	2 cut(s)	55, 123
PpsI	GAGTC	2 cut(s)	55, 123
PsiI	TTATAA	1 cut(s)	351
PspN4I	GGNNCC	4 cut(s)	32, 116, 860, 906
PspPI	GGNCC	2 cut(s)	378, 536
PstI	CTGCAG	1 cut(s)	915
PsuI	RGATCY	3 cut(s)	114, 228, 487
PvuII	CAGCTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	134, 810
SatI	GCNGC	5 cut(s)	19, 249, 408, 594, 828
Sau3AI	GATC	6 cut(s)	97, 114, 228, 261, 313, 487
Sau96I	GGNCC	2 cut(s)	378, 536
SchI	GAGTC	2 cut(s)	56, 123
ScrFI	CCNGG	1 cut(s)	968
SduI	GDGCHC	3 cut(s)	170, 739, 822
SfaNI	GCATC	2 cut(s)	424, 870
SfcI	CTRYAG	1 cut(s)	911
SinI	GGWCC	2 cut(s)	378, 536
Sse9I	AATT	4 cut(s)	7, 301, 764, 978
SseBI	AGGCCT	1 cut(s)	874
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	3 cut(s)	183, 630, 791
StuI	AGGCCT	1 cut(s)	874
StyD4I	CCNGG	1 cut(s)	966
StyI	CCWWGG	2 cut(s)	182, 374
TaaI	ACNGT	2 cut(s)	76, 946
TaiI	ACGT	2 cut(s)	238, 584
TasI	AATT	4 cut(s)	7, 301, 764, 978
TfiI	GAWTC	3 cut(s)	89, 149, 242
Tru1I	TTAA	2 cut(s)	134, 810
Tru9I	TTAA	2 cut(s)	134, 810
TscAI	CASTG	2 cut(s)	180, 301
TseFI	GTSAC	1 cut(s)	699
TseI	GCWGC	5 cut(s)	18, 248, 407, 593, 827
Tsp45I	GTSAC	1 cut(s)	699
TspDTI	ATGAA	3 cut(s)	294, 404, 939
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	2 cut(s)	180, 301
VneI	GTGCAC	1 cut(s)	818
VpaK11BI	GGWCC	2 cut(s)	378, 536
XagI	CCTNNNNNAGG	1 cut(s)	810
XapI	RAATTY	1 cut(s)	301
XmaJI	CCTAGG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	840
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	3 cut(s)	183, 630, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.