Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014598

Physical Location & Seq

Genomic Coordinates Forward (+)

239691 .. 241231

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTTGGGTGGCGGAGGATTTGGAAGTGTGTATAAAGGGTTCATTACTGAGGATTTAAGAGAGGGGATCGACCCCCTTCCGGTAGCTGTTAAAGTTCATGACGGTGATAATAGTTATCAAGGACACAGAGAGTGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCGCATCCAAATTTGGTAAAGCTCATTGGATATTGCTGCGAGGATGAACAGAGGGTGCTGATATATGAGTATATGGCTCGGGGCAGCGTGGAAAACAATTTATTCTCAAGAGTGTTGCTTCCTCTGCCATGGTCCATAAGGATGAAGATTGCATTTGGTGCAGCTCAAGGACTCGCCTTTCTCCATGAGGCAGAGAAACCTGTCATCTATCGTGATTTTAAGACATCTAATATTTTGTTGGATCTGGACTATAATGCAAAGCTCTCAGACTTTGGCCTTGCAAAAGATGGACCTGTGGGGGACAAGTCTCATGTTTCTACACGCATAATGGGGACATATGGATACGCAGCACCAGAGTACATCTTGACGGGCCATCTAACTCCTAGAAGTGACGTTTATAGCTTTGGTGTTGTTCTTCTTGAACTTCTGACCGGTAGGAAATCTTTAGACAAGTCACGGCCAGCCCGGGAGCAAAACCTTACTGACTGGGCTCTCCCGATGCTAAAAGAGAAGAAGAAGGTGCTCAACATCGTTGATCCGATACGAGAAGGAGATTATCCTGTTAAAGGAGTTCAAAAGGCAGCCATGCTAGTATATCATTGCTTGAACCGAAACCCAAAAGCAAGGCCTCTAATGCGAGACATTGTTGACTCTTTGGAGCCTCTGCAGGTCCCGGAGGAAGTTTCTGATAAAAAAACTGTAACCCAGTTTCCGGATGCTGAAACTAAAAGAAAAGAAGAATCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

305

Amino Acids

34.15

Weight (kDa)

6.41

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56460
fragaria_vesca	FvH4_3g45820
malus_domestica	MD03G1002700.v1.1 MD11G1002600.v1.1
prunus_persica	Prupe.6G002400_v2.0.a1
pyrus_communis	pycom03g00260 pycom11g00240
rosa_chinensis	RchiOBHm_Chr5g0083901
rosa_laevigata	RLG00000037063
rosa_multiflora	Rmu_sc0001137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00000700
rosa_rugosa	Rorug05G0487400.1 Rorug05G0487500.1
rosa_samantha	Rh5AG540300 Rh5CG587200 Rh5DG573800
rosa_wichuraiana	Rw5G050230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	823
AccIII	TCCGGA	1 cut(s)	877
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	3 cut(s)	74, 414, 695
AcoI	YGGCCR	1 cut(s)	623
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	3 cut(s)	79, 731, 877
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	3 cut(s)	587, 740, 772
AluBI	AGCT	6 cut(s)	86, 163, 187, 329, 427, 567
AluI	AGCT	6 cut(s)	86, 163, 187, 329, 427, 567
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	2 cut(s)	477, 798
AlwI	GGATC	3 cut(s)	74, 414, 695
Ama87I	CYCGRG	2 cut(s)	243, 630
Aor13HI	TCCGGA	1 cut(s)	877
AoxI	GGCC	4 cut(s)	439, 535, 623, 791
ApeKI	GCWGC	6 cut(s)	160, 201, 249, 326, 512, 746
ApoI	RAATTY	1 cut(s)	175
AsiGI	ACCGGT	1 cut(s)	596
AspS9I	GGNCC	4 cut(s)	297, 455, 535, 835
AsuC2I	CCSGG	3 cut(s)	631, 632, 839
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	2 cut(s)	243, 630
AvaII	GGWCC	3 cut(s)	297, 455, 835
BanII	GRGCYC	1 cut(s)	658
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	6 cut(s)	172, 188, 261, 338, 524, 758
BccI	CCATC	2 cut(s)	446, 546
BceAI	ACGGC	1 cut(s)	638
BciVI	GTATCC	1 cut(s)	500
BcnI	CCSGG	3 cut(s)	631, 632, 839
BcoDI	GTCTC	2 cut(s)	477, 798
BfaI	CTAG	2 cut(s)	549, 755
BfmI	CTRYAG	1 cut(s)	830
BfuAI	ACCTGC	1 cut(s)	823
BfuI	GTATCC	1 cut(s)	500
BisI	GCNGC	6 cut(s)	161, 202, 250, 327, 513, 747
BlsI	GCNGC	6 cut(s)	162, 203, 251, 328, 514, 748
Bme1390I	CCNGG	3 cut(s)	631, 632, 839
Bme18I	GGWCC	3 cut(s)	297, 455, 835
BmeT110I	CYCGRG	2 cut(s)	243, 630
BmgT120I	GGNCC	4 cut(s)	297, 455, 535, 835
BmiI	GGNNCC	2 cut(s)	825, 837
BmrFI	CCNGG	3 cut(s)	631, 632, 839
BmrI	ACTGGG	2 cut(s)	661, 865
BmsI	GCATC	3 cut(s)	178, 654, 871
BmuI	ACTGGG	2 cut(s)	661, 865
BpuEI	CTTGAG	2 cut(s)	256, 315
BpuMI	CCSGG	3 cut(s)	631, 632, 839
BsaJI	CCNNGG	2 cut(s)	293, 630
BsaWI	WCCGGW	3 cut(s)	79, 596, 877
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 731, 877
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	656, 871
Bse3DI	GCAATG	1 cut(s)	763
BseAI	TCCGGA	1 cut(s)	877
BseDI	CCNNGG	2 cut(s)	293, 630
BseGI	GGATG	4 cut(s)	169, 214, 312, 886
BseLI	CCNNNNNNNGG	3 cut(s)	79, 731, 877
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	2 cut(s)	39, 444
BseNI	ACTGG	2 cut(s)	656, 871
BseXI	GCAGC	6 cut(s)	172, 188, 261, 338, 524, 758
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	4 cut(s)	441, 537, 625, 793
BshTI	ACCGGT	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	690
BsiHKCI	CYCGRG	2 cut(s)	243, 630
BsiSI	CCGG	5 cut(s)	80, 597, 631, 839, 878
BslFI	GGGAC	3 cut(s)	479, 511, 821
BslI	CCNNNNNNNGG	3 cut(s)	79, 731, 877
BsmAI	GTCTC	2 cut(s)	477, 798
BsmFI	GGGAC	3 cut(s)	479, 511, 821
BsnI	GGCC	4 cut(s)	441, 537, 625, 793
BsoBI	CYCGRG	2 cut(s)	243, 630
Bsp1286I	GDGCHC	2 cut(s)	658, 690
Bsp13I	TCCGGA	1 cut(s)	877
Bsp143I	GATC	3 cut(s)	66, 406, 700
Bsp19I	CCATGG	1 cut(s)	293
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	4 cut(s)	441, 537, 625, 793
BspCNI	CTCAG	2 cut(s)	40, 443
BspEI	TCCGGA	1 cut(s)	877
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	825, 837
BspMAI	CTGCAG	1 cut(s)	834
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	3 cut(s)	74, 414, 695
BsrDI	GCAATG	1 cut(s)	763
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	656, 871
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	2 cut(s)	293, 630
BssMI	GATC	3 cut(s)	66, 406, 700
BssT1I	CCWWGG	1 cut(s)	293
Bst4CI	ACNGT	3 cut(s)	104, 865, 912
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	138, 627
BstDEI	CTNAG	2 cut(s)	48, 430
BstDSI	CCRYGG	1 cut(s)	293
BstENI	CCTNNNNNAGG	1 cut(s)	729
BstF5I	GGATG	4 cut(s)	169, 214, 312, 886
BstKTI	GATC	3 cut(s)	69, 409, 703
BstMAI	GTCTC	2 cut(s)	477, 798
BstMBI	GATC	3 cut(s)	66, 406, 700
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 289, 323, 799
BstSCI	CCNGG	3 cut(s)	629, 630, 837
BstSFI	CTRYAG	1 cut(s)	830
BstV1I	GCAGC	6 cut(s)	172, 188, 261, 338, 524, 758
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	4 cut(s)	441, 537, 625, 793
BtgI	CCRYGG	1 cut(s)	293
BtsCI	GGATG	4 cut(s)	169, 214, 312, 886
BtsIMutI	CAGTG	1 cut(s)	908
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	2 cut(s)	138, 627
CciI	TCATGA	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	4 cut(s)	297, 455, 535, 835
Cfr9I	CCCGGG	1 cut(s)	630
Csp6I	GTAC	1 cut(s)	523
CspAI	ACCGGT	1 cut(s)	596
CviAII	CATG	5 cut(s)	98, 294, 350, 476, 751
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	2 cut(s)	48, 430
DpnI	GATC	3 cut(s)	68, 408, 702
DpnII	GATC	3 cut(s)	66, 406, 700
EaeI	YGGCCR	1 cut(s)	623
EciI	GGCGGA	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	293
Eco147I	AGGCCT	1 cut(s)	793
Eco24I	GRGCYC	1 cut(s)	658
Eco47I	GGWCC	3 cut(s)	297, 455, 835
Eco88I	CYCGRG	2 cut(s)	243, 630
EcoNI	CCTNNNNNAGG	1 cut(s)	729
EcoO109I	RGGNCCY	1 cut(s)	835
EcoT14I	CCWWGG	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	5 cut(s)	101, 297, 353, 479, 754
FaqI	GGGAC	3 cut(s)	479, 511, 821
FatI	CATG	5 cut(s)	97, 293, 349, 475, 750
FauNDI	CATATG	1 cut(s)	502
Fnu4HI	GCNGC	6 cut(s)	161, 202, 250, 327, 513, 747
FokI	GGATG	4 cut(s)	156, 221, 319, 893
FriOI	GRGCYC	1 cut(s)	658
Fsp4HI	GCNGC	6 cut(s)	161, 202, 250, 327, 513, 747
FspBI	CTAG	2 cut(s)	549, 755
GluI	GCNGC	6 cut(s)	161, 202, 250, 327, 513, 747
HaeIII	GGCC	4 cut(s)	441, 537, 625, 793
HapII	CCGG	5 cut(s)	80, 597, 631, 839, 878
Hin1II	CATG	5 cut(s)	101, 297, 353, 479, 754
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	3 cut(s)	336, 815, 905
HpaII	CCGG	5 cut(s)	80, 597, 631, 839, 878
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	814
Hpy188I	TCNGA	4 cut(s)	433, 594, 705, 853
Hpy188III	TCNNGA	8 cut(s)	98, 273, 377, 410, 529, 584, 661, 878
Hpy8I	GTNNAC	1 cut(s)	814
HpyAV	CCTTC	3 cut(s)	86, 676, 707
HpyCH4III	ACNGT	3 cut(s)	104, 865, 912
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	5 cut(s)	317, 326, 422, 446, 832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 289, 323, 799
HpyF3I	CTNAG	2 cut(s)	48, 430
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	5 cut(s)	101, 297, 353, 479, 754
Kpn2I	TCCGGA	1 cut(s)	877
Kzo9I	GATC	3 cut(s)	66, 406, 700
LmnI	GCTCC	2 cut(s)	634, 823
Lsp1109I	GCAGC	6 cut(s)	172, 188, 261, 338, 524, 758
LweI	GCATC	3 cut(s)	178, 654, 871
MaeI	CTAG	2 cut(s)	549, 755
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	3 cut(s)	554, 618, 865
MalI	GATC	3 cut(s)	68, 408, 702
MboI	GATC	3 cut(s)	66, 406, 700
MboII	GAAGA	5 cut(s)	322, 572, 688, 691, 914
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	658, 690
MluCI	AATT	2 cut(s)	175, 262
MlyI	GAGTC	2 cut(s)	330, 809
MmeI	TCCRAC	1 cut(s)	384
MroI	TCCGGA	1 cut(s)	877
MseI	TTAA	4 cut(s)	56, 90, 384, 729
MslI	CAYNNNNRTG	2 cut(s)	102, 305
MspI	CCGG	5 cut(s)	80, 597, 631, 839, 878
MspR9I	CCNGG	3 cut(s)	631, 632, 839
MwoI	GCNNNNNNNGC	4 cut(s)	166, 289, 323, 799
NciI	CCSGG	3 cut(s)	631, 632, 839
NcoI	CCATGG	1 cut(s)	293
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	3 cut(s)	66, 406, 700
NlaIII	CATG	5 cut(s)	101, 297, 353, 479, 754
NlaIV	GGNNCC	2 cut(s)	825, 837
NmuCI	GTSAC	2 cut(s)	554, 618
PagI	TCATGA	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	793
PfeI	GAWTC	1 cut(s)	905
PfoI	TCCNGGA	1 cut(s)	837
PinAI	ACCGGT	1 cut(s)	596
PkrI	GCNGC	6 cut(s)	162, 203, 251, 328, 514, 748
PleI	GAGTC	2 cut(s)	330, 809
PpsI	GAGTC	2 cut(s)	330, 809
PpuMI	RGGWCCY	1 cut(s)	835
Psp5II	RGGWCCY	1 cut(s)	835
PspN4I	GGNNCC	2 cut(s)	825, 837
PspPI	GGNCC	4 cut(s)	297, 455, 535, 835
PspPPI	RGGWCCY	1 cut(s)	835
PsrI	GAACNNNNNNTAC	2 cut(s)	23, 55
PstI	CTGCAG	1 cut(s)	834
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	2 cut(s)	102, 305
SaqAI	TTAA	4 cut(s)	56, 90, 384, 729
SatI	GCNGC	6 cut(s)	161, 202, 250, 327, 513, 747
Sau3AI	GATC	3 cut(s)	66, 406, 700
Sau96I	GGNCC	4 cut(s)	297, 455, 535, 835
SchI	GAGTC	2 cut(s)	330, 809
ScrFI	CCNGG	3 cut(s)	631, 632, 839
SduI	GDGCHC	2 cut(s)	658, 690
SfaNI	GCATC	3 cut(s)	178, 654, 871
SfcI	CTRYAG	1 cut(s)	830
SinI	GGWCC	3 cut(s)	297, 455, 835
SmaI	CCCGGG	1 cut(s)	632
SmiMI	CAYNNNNRTG	2 cut(s)	102, 305
SmlI	CTYRAG	2 cut(s)	271, 330
SmoI	CTYRAG	2 cut(s)	271, 330
Sse9I	AATT	2 cut(s)	175, 262
SseBI	AGGCCT	1 cut(s)	793
SsiI	CCGC	1 cut(s)	12
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	549, 755
StuI	AGGCCT	1 cut(s)	793
StyD4I	CCNGG	3 cut(s)	629, 630, 837
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	3 cut(s)	104, 865, 912
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	175, 262
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	1 cut(s)	905
Tru1I	TTAA	4 cut(s)	56, 90, 384, 729
Tru9I	TTAA	4 cut(s)	56, 90, 384, 729
TscAI	CASTG	1 cut(s)	915
TseFI	GTSAC	2 cut(s)	554, 618
TseI	GCWGC	6 cut(s)	160, 201, 249, 326, 512, 746
Tsp45I	GTSAC	2 cut(s)	554, 618
TspDTI	ATGAA	4 cut(s)	31, 86, 225, 323
TspMI	CCCGGG	1 cut(s)	630
TspRI	CASTG	1 cut(s)	915
VpaK11BI	GGWCC	3 cut(s)	297, 455, 835
XagI	CCTNNNNNAGG	1 cut(s)	729
XapI	RAATTY	1 cut(s)	175
XmaI	CCCGGG	1 cut(s)	630
XspI	CTAG	2 cut(s)	549, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.