AT5G57480

ATPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013397
Physical Location & Seq
Reverse (-)
23279139 .. 23281271
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57480.1

Sequence Viewer

Length: 1563 bp
ATGAAAGAGTATTGGACATCATTAGCTTCACTACTCGGAGTTTTAGCATTTTGTCAAAGCTTAATGCAATCAATATTCCCACCGGAGCTCCGTTTCGCTTTCCTCAAATTCTTCAACAGAATCTTCCACGTCTTCTCTTCTTACTGCTACTTCGACATAACAGAGATCGACGGCGTCAACACCAACGAACTCTACAACGCCGTTCAGCTTTACTTAAGCTCCTCCGTCTCAATAGCCGGAAACCGTTTAAGTCTAACCCGCGCCGTTAACTCTTCCTCCATCACTTTCGGTCTCTCCAACAACGACTCAATCGTCGACACCTTTAACGGCGTTACAGTTCTATGGGAACACGTCGTTACACAGCGTCAAACTCAGACTTTTGCTTGGAGACCATTACCTGAAGAGAAACGTGGATTCACTCTACGAATCAAGAAAAAGGACAAAACTTTGATACTCAATTCTTATCTTGATTACATCATGGAGAGAGCTAATGAGATTCGTCGGAAAAACCAAGACCGGTTGCTTTATACTAACTCAAGAGGTGGGTCTCTTGACTCAAGAGGACATCCTTGGGAATCTGTTCCTTTTAAGCATCCGAGTACTTTCGAAACTTTAGCTATGGATCCGAGAAAGAAGCAACAGATCATGGATGATCTTAAAGATTTTGCTGAAGGTCAAGTCTTTTATCAGAAGACTGGTAGGGCTTGGAAGAGAGGTTACTTGTTGTACGGGCCACCAGGTACTGGTAAGTCGAGTATGATCGCAGCGATGGCGAATTATCTCGGTTACGATATTTACGATCTTGAGCTCACTGAGGTTCATAGTAACTCGGAGTTGAGGAAGTTGTTGATGAAAACGAGTTCTAAGTCTATTATTGTTATAGAGGATATTGATTGTTCGATTAATTTGACTAATAGGAAGAAGAATAGTAGTAATGTATCGTCGCAACGGAGTTATTATGATGCGGAGACAAGAAACGGTTCGGGTTCAGGTTCGGGTGGTTCGGGAGAGGAAGGTGGTAATGGGAATACTATAACGTTGTCGGGTTTGTTGAATTTTACAGATGGGCTTTGGTCTTGTTGTGGAAGTGAGAGGATCTTTGTGTTTACGACCAATCATATAGAGAAGCTTGATCCTGCATTGCTTAGAAGTGGGAGAATGGATATGCATATCTACATGAGTTTTTGTAACTTCCCATCGTTGAAGATTTTGTTGAAGAATTATTTGGGGTATGGGGTGGAAGATATAAACGGCGACGTTTTGAAGGAGATGGAGATGGTTGTGGAGAAGGCTGAGATGACTCCTGCTGATGTAAGTGAGGCTTTGATTAAGAATAGGAGGGATAAAGAGAAGGCGATTAGGGAGTTGTTGGAGGATTTAAAAAGTAGAGGGGAGAGAAATGTGAAAGATGGGAAATTGAGGGGTGGAAGTGGGAATTTGACTGAATTGGAAGTTGTTGAGGAACAAGAGAAGAGGGCAATAGATAGTCAAAATGAAGATGAGGATCATGATGAAGAAGAGATTGAGCTTGAGGATAACATTTGTAAGACTAGAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

520

Amino Acids

59.1

Weight (kDa)

5.48

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 26 - 118 4e-24 Domain associated at C-terminal with AAA
AAA PF00004 240 - 394 1.4e-18 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 396 - 465 1.9e-10 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25835 AT4G30250 AT4G30250 AT5G57480
fragaria_vesca FvH4_4g08330
malus_domestica MD13G1255400.v1.1
prunus_persica Prupe.1G086500_v2.0.a1
pyrus_communis pycom13g22720
rosa_chinensis RchiOBHm_Chr4g0402591
rosa_laevigata RLG00000009064
rosa_multiflora Rmu_co8332339.1_g000001 Rmu_sc0004921.1_g000012
rosa_roxburghii Rroxscaffold_5G00347310
rosa_rugosa Rorug04G0036900
rosa_samantha Rh4AG114500 Rh4BG106800 Rh4DG106700
rosa_wichuraiana Rw4G009130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 743
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 261
AciI CCGC 2 cut(s) 259, 965
AclI AACGTT 1 cut(s) 1037
AclWI GGATC 5 cut(s) 617, 630, 1103, 1127, 1512
AcsI RAATTY 3 cut(s) 107, 1054, 1435
AcuI CTGAAG 2 cut(s) 420, 690
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 3 cut(s) 601, 728, 742
AfiI CCNNNNNNNGG 1 cut(s) 743
AflII CTTAAG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 349
AgeI ACCGGT 1 cut(s) 516
AgsI TTSAA 5 cut(s) 115, 1054, 1204, 1216, 1264
AjiI CACGTC 2 cut(s) 130, 352
AjnI CCWGG 1 cut(s) 736
AjuI GAANNNNNNNTTGG 2 cut(s) 1208, 1240
Alw21I GWGCWC 2 cut(s) 90, 810
Alw26I GTCTC 5 cut(s) 232, 296, 382, 552, 962
AlwI GGATC 5 cut(s) 617, 630, 1103, 1127, 1512
AlwNI CAGNNNCTG 1 cut(s) 743
AoxI GGCC 1 cut(s) 731
ApeKI GCWGC 1 cut(s) 764
ApoI RAATTY 3 cut(s) 107, 1054, 1435
AseI ATTAAT 1 cut(s) 903
AsiGI ACCGGT 1 cut(s) 516
Asp700I GAANNNNTTC 2 cut(s) 579, 979
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 731
AsuII TTCGAA 1 cut(s) 606
BamHI GGATCC 1 cut(s) 622
BanII GRGCYC 2 cut(s) 90, 810
BarI GAAGNNNNNNTAC 2 cut(s) 701, 733
BbsI GAAGAC 2 cut(s) 124, 698
Bbv12I GWGCWC 2 cut(s) 90, 810
BbvI GCAGC 1 cut(s) 776
BccI CCATC 7 cut(s) 287, 763, 1058, 1204, 1264, 1270, 1403
BceAI ACGGC 5 cut(s) 185, 187, 248, 343, 1267
BciT130I CCWGG 1 cut(s) 738
BcoDI GTCTC 5 cut(s) 232, 296, 382, 552, 962
BfaI CTAG 1 cut(s) 1551
BfrI CTTAAG 1 cut(s) 214
BisI GCNGC 1 cut(s) 765
BlsI GCNGC 1 cut(s) 766
BmcAI AGTACT 1 cut(s) 601
Bme1390I CCNGG 1 cut(s) 738
BmgBI CACGTC 2 cut(s) 130, 352
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 1 cut(s) 738
BmsI GCATC 2 cut(s) 601, 952
BpiI GAAGAC 2 cut(s) 124, 698
Bpu14I TTCGAA 1 cut(s) 606
BpuEI CTTGAG 4 cut(s) 520, 541, 824, 1550
BsaBI GATNNNNATC 1 cut(s) 1503
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 3 cut(s) 296, 382, 552
BsaJI CCNNGG 1 cut(s) 569
BsaWI WCCGGW 2 cut(s) 82, 516
BsaXI ACNNNNNCTCC 6 cut(s) 72, 102, 203, 233, 260, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 743
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 2 cut(s) 700, 748
Bse3DI GCAATG 1 cut(s) 1139
Bse8I GATNNNNATC 1 cut(s) 1503
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 1 cut(s) 569
BseGI GGATG 3 cut(s) 565, 592, 655
BseJI GATNNNNATC 1 cut(s) 1503
BseLI CCNNNNNNNGG 1 cut(s) 743
BseMI GCAATG 1 cut(s) 1139
BseMII CTCAG 3 cut(s) 386, 804, 1284
BseNI ACTGG 2 cut(s) 700, 748
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 776
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 733
BshTI ACCGGT 1 cut(s) 516
BsiHKAI GWGCWC 2 cut(s) 90, 810
BsiSI CCGG 3 cut(s) 83, 237, 517
BslI CCNNNNNNNGG 1 cut(s) 743
BsmAI GTCTC 5 cut(s) 232, 296, 382, 552, 962
BsmBI CGTCTC 1 cut(s) 232
BsnI GGCC 1 cut(s) 733
Bso31I GGTCTC 3 cut(s) 296, 382, 552
Bsp119I TTCGAA 1 cut(s) 606
Bsp1286I GDGCHC 2 cut(s) 90, 810
Bsp143I GATC 9 cut(s) 165, 622, 642, 652, 759, 799, 1095, 1132, 1504
BspACI CCGC 2 cut(s) 259, 965
BspANI GGCC 1 cut(s) 733
BspCNI CTCAG 3 cut(s) 385, 805, 1285
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 1507
BspLI GGNNCC 1 cut(s) 624
BspPI GGATC 5 cut(s) 617, 630, 1103, 1127, 1512
BspT104I TTCGAA 1 cut(s) 606
BspTI CTTAAG 1 cut(s) 214
BspTNI GGTCTC 3 cut(s) 296, 382, 552
BsrDI GCAATG 1 cut(s) 1139
BsrFI RCCGGY 1 cut(s) 516
BsrI ACTGG 2 cut(s) 700, 748
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 1 cut(s) 569
BssMI GATC 9 cut(s) 165, 622, 642, 652, 759, 799, 1095, 1132, 1504
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 569
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 3 cut(s) 245, 337, 980
Bst6I CTCTTC 6 cut(s) 142, 277, 396, 704, 1466, 1512
BstACI GRCGYC 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 606
BstDEI CTNAG 5 cut(s) 372, 813, 864, 1145, 1293
BstF5I GGATG 3 cut(s) 565, 592, 655
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 9 cut(s) 168, 625, 645, 655, 762, 802, 1098, 1135, 1507
BstMAI GTCTC 5 cut(s) 232, 296, 382, 552, 962
BstMBI GATC 9 cut(s) 165, 622, 642, 652, 759, 799, 1095, 1132, 1504
BstMWI GCNNNNNNNGC 1 cut(s) 770
BstNI CCWGG 1 cut(s) 738
BstSCI CCNGG 1 cut(s) 736
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 776
BstV2I GAAGAC 2 cut(s) 124, 698
BstX2I RGATCY 2 cut(s) 622, 1095
BstYI RGATCY 2 cut(s) 622, 1095
BsuRI GGCC 1 cut(s) 733
BtgZI GCGATG 1 cut(s) 782
BtrI CACGTC 2 cut(s) 130, 352
BtsCI GGATG 3 cut(s) 565, 592, 655
BtsIMutI CAGTG 1 cut(s) 810
CaiI CAGNNNCTG 1 cut(s) 743
CciI TCATGA 1 cut(s) 1507
CfoI GCGC 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 1 cut(s) 731
CseI GACGC 2 cut(s) 163, 353
CsiI ACCWGGT 1 cut(s) 736
Csp6I GTAC 3 cut(s) 600, 727, 741
CspAI ACCGGT 1 cut(s) 516
CviAII CATG 4 cut(s) 478, 646, 1177, 1508
CviQI GTAC 3 cut(s) 600, 727, 741
DdeI CTNAG 5 cut(s) 372, 813, 864, 1145, 1293
DpnI GATC 9 cut(s) 167, 624, 644, 654, 761, 801, 1097, 1134, 1506
DpnII GATC 9 cut(s) 165, 622, 642, 652, 759, 799, 1095, 1132, 1504
DraI TTTAAA 1 cut(s) 1380
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eam1104I CTCTTC 6 cut(s) 142, 277, 396, 704, 1466, 1512
EarI CTCTTC 6 cut(s) 142, 277, 396, 704, 1466, 1512
Ecl136II GAGCTC 2 cut(s) 88, 808
Eco130I CCWWGG 1 cut(s) 569
Eco24I GRGCYC 2 cut(s) 90, 810
Eco31I GGTCTC 3 cut(s) 296, 382, 552
Eco53kI GAGCTC 2 cut(s) 88, 808
Eco57I CTGAAG 2 cut(s) 420, 690
EcoICRI GAGCTC 2 cut(s) 88, 808
EcoRII CCWGG 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 569
EcoT22I ATGCAT 1 cut(s) 1170
EcoT38I GRGCYC 2 cut(s) 90, 810
ErhI CCWWGG 1 cut(s) 569
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 4 cut(s) 481, 649, 1180, 1511
FalI AAGNNNNNCTT 2 cut(s) 1306, 1338
FatI CATG 4 cut(s) 477, 645, 1176, 1507
FauI CCCGC 1 cut(s) 266
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 765
FokI GGATG 3 cut(s) 552, 579, 662
FriOI GRGCYC 2 cut(s) 90, 810
Fsp4HI GCNGC 1 cut(s) 765
FspBI CTAG 1 cut(s) 1551
GlaI GCGC 1 cut(s) 262
GluI GCNGC 1 cut(s) 765
HaeIII GGCC 1 cut(s) 733
HapII CCGG 3 cut(s) 83, 237, 517
HgaI GACGC 2 cut(s) 163, 353
HhaI GCGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 4 cut(s) 481, 649, 1180, 1511
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HincII GTYRAC 3 cut(s) 178, 268, 316
HindII GTYRAC 3 cut(s) 178, 268, 316
HindIII AAGCTT 2 cut(s) 58, 1127
HinfI GANTC 8 cut(s) 120, 305, 414, 426, 496, 554, 575, 1300
HpaI GTTAAC 1 cut(s) 268
HpaII CCGG 3 cut(s) 83, 237, 517
Hpy166II GTNNAC 4 cut(s) 178, 268, 316, 1107
Hpy188I TCNGA 7 cut(s) 38, 375, 504, 597, 627, 690, 832
Hpy188III TCNNGA 8 cut(s) 430, 467, 537, 551, 558, 803, 1005, 1508
Hpy8I GTNNAC 4 cut(s) 178, 268, 316, 1107
Hpy99I CGWCG 6 cut(s) 173, 317, 356, 504, 946, 1259
HpyAV CCTTC 5 cut(s) 665, 1007, 1258, 1282, 1345
HpyCH4III ACNGT 3 cut(s) 245, 337, 980
HpyCH4IV ACGT 5 cut(s) 129, 351, 409, 1037, 1257
HpyCH4V TGCA 3 cut(s) 67, 1139, 1168
HpyF10VI GCNNNNNNNGC 1 cut(s) 770
HpyF3I CTNAG 5 cut(s) 372, 813, 864, 1145, 1293
HpySE526I ACGT 5 cut(s) 129, 351, 409, 1037, 1257
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 4 cut(s) 481, 649, 1180, 1511
HspAI GCGC 1 cut(s) 261
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 9 cut(s) 165, 622, 642, 652, 759, 799, 1095, 1132, 1504
LmnI GCTCC 3 cut(s) 85, 93, 224
Lsp1109I GCAGC 1 cut(s) 776
LweI GCATC 2 cut(s) 601, 952
MabI ACCWGGT 1 cut(s) 736
MaeI CTAG 1 cut(s) 1551
MaeII ACGT 5 cut(s) 129, 351, 409, 1037, 1257
MaeIII GTNAC 6 cut(s) 331, 355, 716, 785, 824, 1187
MalI GATC 9 cut(s) 167, 624, 644, 654, 761, 801, 1097, 1134, 1506
MboI GATC 9 cut(s) 165, 622, 642, 652, 759, 799, 1095, 1132, 1504
MflI RGATCY 2 cut(s) 622, 1095
MhlI GDGCHC 2 cut(s) 90, 810
MluCI AATT 9 cut(s) 107, 457, 775, 904, 1054, 1219, 1415, 1435, 1445
MlyI GAGTC 3 cut(s) 299, 548, 1294
MmeI TCCRAC 3 cut(s) 321, 482, 1350
Mph1103I ATGCAT 1 cut(s) 1170
MroXI GAANNNNTTC 2 cut(s) 579, 979
MspCI CTTAAG 1 cut(s) 214
MspI CCGG 3 cut(s) 83, 237, 517
MspR9I CCNGG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 738
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 770
NdeII GATC 9 cut(s) 165, 622, 642, 652, 759, 799, 1095, 1132, 1504
NlaIII CATG 4 cut(s) 481, 649, 1180, 1511
NlaIV GGNNCC 1 cut(s) 624
NsiI ATGCAT 1 cut(s) 1170
NspV TTCGAA 1 cut(s) 606
PagI TCATGA 1 cut(s) 1507
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 795
PdmI GAANNNNTTC 2 cut(s) 579, 979
PfeI GAWTC 5 cut(s) 120, 414, 426, 496, 575
PflFI GACNNNGTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 743
PinAI ACCGGT 1 cut(s) 516
PkrI GCNGC 1 cut(s) 766
PleI GAGTC 3 cut(s) 299, 548, 1294
PpsI GAGTC 3 cut(s) 299, 548, 1294
PshBI ATTAAT 1 cut(s) 903
Psp124BI GAGCTC 2 cut(s) 90, 810
Psp1406I AACGTT 1 cut(s) 1037
Psp6I CCWGG 1 cut(s) 736
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 1 cut(s) 731
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 2 cut(s) 622, 1095
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 3 cut(s) 601, 728, 742
RsaNI GTAC 3 cut(s) 600, 727, 741
SacI GAGCTC 2 cut(s) 90, 810
SalI GTCGAC 1 cut(s) 314
SatI GCNGC 1 cut(s) 765
Sau3AI GATC 9 cut(s) 165, 622, 642, 652, 759, 799, 1095, 1132, 1504
Sau96I GGNCC 1 cut(s) 731
ScaI AGTACT 1 cut(s) 601
SchI GAGTC 3 cut(s) 299, 548, 1294
ScrFI CCNGG 1 cut(s) 738
SduI GDGCHC 2 cut(s) 90, 810
SexAI ACCWGGT 1 cut(s) 736
SfaNI GCATC 2 cut(s) 601, 952
SfuI TTCGAA 1 cut(s) 606
SmlI CTYRAG 5 cut(s) 214, 535, 556, 803, 1529
SmoI CTYRAG 5 cut(s) 214, 535, 556, 803, 1529
Sse9I AATT 9 cut(s) 107, 457, 775, 904, 1054, 1219, 1415, 1435, 1445
SsiI CCGC 2 cut(s) 259, 965
SspI AATATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 1551
SstI GAGCTC 2 cut(s) 90, 810
StyD4I CCNGG 1 cut(s) 736
StyI CCWWGG 1 cut(s) 569
TaaI ACNGT 3 cut(s) 245, 337, 980
TaiI ACGT 5 cut(s) 132, 354, 412, 1040, 1260
TaqI TCGA 6 cut(s) 153, 168, 315, 606, 752, 899
TaqII GACCGA 1 cut(s) 278
TasI AATT 9 cut(s) 107, 457, 775, 904, 1054, 1219, 1415, 1435, 1445
TatI WGTACW 1 cut(s) 599
TfiI GAWTC 5 cut(s) 120, 414, 426, 496, 575
TscAI CASTG 1 cut(s) 817
TseI GCWGC 1 cut(s) 764
TspDTI ATGAA 5 cut(s) 17, 809, 866, 1509, 1527
TspGWI ACGGA 3 cut(s) 80, 214, 964
TspRI CASTG 1 cut(s) 817
Tth111I GACNNNGTC 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 743
Vha464I CTTAAG 1 cut(s) 214
VspI ATTAAT 1 cut(s) 903
XapI RAATTY 3 cut(s) 107, 1054, 1435
XmiI GTMKAC 1 cut(s) 315
XmnI GAANNNNTTC 2 cut(s) 579, 979
XspI CTAG 1 cut(s) 1551
ZrmI AGTACT 1 cut(s) 601
Zsp2I ATGCAT 1 cut(s) 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.