Rorug04G0036900

mitochondrial chaperone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013397
Physical Location & Seq
Forward (+)
5533976 .. 5534489
514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0036900.1

Sequence Viewer

Length: 219 bp
ATGGCTGATCAATGCGAAGGTAAGGATTCATGGCCTGAACTGTTGGGAGCTCAGGGGACAGTTGCAAAGGAAACAATTGAGAGCGAAAACTCTTTAGTCAAGGCAGAGATCGTGCTAGAAGGAACAATTGTCCCTATTAATATCCGGAGACAGTGTGATAGGGTTCGTGTTTGGGTCGATACAGATGGCATTGTTACCAGGGTCCCTGTCATTGGGTGA

Protein Analysis

72

Amino Acids

7.91

Weight (kDa)

4.61

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 72 1.6e-21 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25835 AT4G30250 AT4G30250 AT5G57480
fragaria_vesca FvH4_4g08330
malus_domestica MD13G1255400.v1.1
prunus_persica Prupe.1G086500_v2.0.a1
pyrus_communis pycom13g22720
rosa_chinensis RchiOBHm_Chr4g0402591
rosa_laevigata RLG00000009064
rosa_multiflora Rmu_co8332339.1_g000001 Rmu_sc0004921.1_g000012
rosa_roxburghii Rroxscaffold_5G00347310
rosa_rugosa Rorug04G0036900
rosa_samantha Rh4AG114500 Rh4BG106800 Rh4DG106700
rosa_wichuraiana Rw4G009130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 212
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 142
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 1 cut(s) 32
AseI ATTAAT 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 202
AvaII GGWCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 52
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 2 cut(s) 203, 204
BmrFI CCNGG 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 212
BseAI TCCGGA 1 cut(s) 144
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 65
BshFI GGCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 3 cut(s) 70, 116, 188
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 3 cut(s) 70, 116, 188
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 52
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 2 cut(s) 7, 108
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 203, 204
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 7, 108
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 3 cut(s) 42, 61, 153
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 2 cut(s) 10, 111
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 2 cut(s) 7, 108
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BsuRI GGCC 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 202
CviAII CATG 1 cut(s) 30
CviJI RGCY 3 cut(s) 5, 34, 50
CviKI_1 RGCY 3 cut(s) 5, 34, 50
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 9, 110
DpnII GATC 2 cut(s) 7, 108
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 1 cut(s) 33
FaiI YATR 1 cut(s) 31
FaqI GGGAC 3 cut(s) 70, 116, 188
FatI CATG 1 cut(s) 29
FbaI TGATCA 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 52
FspBI CTAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 145
Hin1II CATG 1 cut(s) 33
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 11, 113
HpyCH4III ACNGT 3 cut(s) 42, 61, 153
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 33
KflI GGGWCCC 1 cut(s) 202
Kpn2I TCCGGA 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 108
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 38, 48, 158, 184, 211
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 193
MalI GATC 2 cut(s) 9, 110
MboI GATC 2 cut(s) 7, 108
MfeI CAATTG 2 cut(s) 75, 126
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 2 cut(s) 75, 126
MroI TCCGGA 1 cut(s) 144
MseI TTAA 1 cut(s) 138
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 199
MunI CAATTG 2 cut(s) 75, 126
MvaI CCWGG 1 cut(s) 199
NdeII GATC 2 cut(s) 7, 108
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 203, 204
PfeI GAWTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 203, 204
PspPI GGNCC 1 cut(s) 202
PspPPI RGGWCCY 1 cut(s) 202
SacI GAGCTC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 138
Sau3AI GATC 2 cut(s) 7, 108
Sau96I GGNCC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 52
SetI ASST 2 cut(s) 22, 52
SinI GGWCC 1 cut(s) 202
Sse9I AATT 2 cut(s) 75, 126
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 3 cut(s) 42, 61, 153
TaqI TCGA 1 cut(s) 177
TasI AATT 2 cut(s) 75, 126
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 18
TspRI CASTG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 202
VspI ATTAAT 1 cut(s) 138
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.