Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8332339.1

Orthogroup ID

OG0013397

Physical Location & Seq

Genomic Coordinates Forward (+)

29 .. 980

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8332339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 946 bp

atgaaagagtactggacctccctggcctcccttctaggagtgttggccttctgccagagcctcctccaaaccgtgttcccgccggagctccggttcgcttttctgaaactggccagcaaaatcttccactggttctcctcctactactacttcgacatcaccgagatcgacggcgtgaacaccaacgagctctacaacgccgtccagctctacctgagcgccaccgtctccatcaccggcacgcgcctcagcctcacccgcgccctcaactcctccgccatcaccttcggcctctccaacaacgactgcatggtcgacaccttcaacggcgtcacggtcctctgggagcacgtggtcacccagagacagaaccagaccttctcctggcggccattgccggaagagaagcgaggcttcacgttgcgaatcaagaagaaagacaagttcttgatcctcaactcctacttggacttcatcatggacaaggccaatgacatccgccgcaagaatcaagacaggctcttgtacacaaactcacgaggtgggtcgttggattctcgaggccatccttgggaatctgtgccgttcaagcacccaagcacattcgacacgttggctatggacccaaaagtgaagcaggagattatggatgatttgaaagacttcgccaatggacagagcttttatcagaaaactgggcgggcttggaaaagagggtatcttttgtacggcccacccggtactggaaaatcaagcatgattgctgcaatggccaattttctggggtatgatatctatgatctagagctcactgaggttcacaccaactccgagctgaggaagttgctgatgaagactagttccaagtcgattattgtgattgaggatatagattgctccatcactttgactaataggaagaagaacaatggtggtggtggtggtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

315

Amino Acids

35.87

Weight (kDa)

9.04

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25835 AT4G30250 AT4G30250 AT5G57480
fragaria_vesca	FvH4_4g08330
malus_domestica	MD13G1255400.v1.1
prunus_persica	Prupe.1G086500_v2.0.a1
pyrus_communis	pycom13g22720
rosa_chinensis	RchiOBHm_Chr4g0402591
rosa_laevigata	RLG00000009064
rosa_multiflora	Rmu_co8332339.1_g000001 Rmu_sc0004921.1_g000012
rosa_roxburghii	Rroxscaffold_5G00347310
rosa_rugosa	Rorug04G0036900
rosa_samantha	Rh4AG114500 Rh4BG106800 Rh4DG106700
rosa_wichuraiana	Rw4G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	2 cut(s)	244, 261
AciI	CCGC	7 cut(s)	80, 259, 276, 388, 499, 502, 700
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	3 cut(s)	111, 389, 771
AcvI	CACGTG	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	330
AdeI	CACNNNGTG	1 cut(s)	542
AfaI	GTAC	4 cut(s)	11, 527, 728, 742
AfiI	CCNNNNNNNGG	4 cut(s)	384, 571, 743, 837
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	3 cut(s)	325, 589, 658
AhlI	ACTAGT	1 cut(s)	857
AjnI	CCWGG	2 cut(s)	21, 383
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	6 cut(s)	88, 190, 208, 681, 808, 835
AluI	AGCT	6 cut(s)	88, 190, 208, 681, 808, 835
Alw21I	GWGCWC	4 cut(s)	90, 192, 351, 810
Alw26I	GTCTC	2 cut(s)	232, 358
AlwI	GGATC	1 cut(s)	445
Ama87I	CYCGRG	1 cut(s)	558
AoxI	GGCC	9 cut(s)	24, 45, 111, 289, 389, 486, 562, 730, 771
ApeKI	GCWGC	1 cut(s)	764
Asp700I	GAANNNNTTC	1 cut(s)	662
AspLEI	GCGC	3 cut(s)	221, 246, 263
AspS9I	GGNCC	4 cut(s)	15, 337, 622, 731
AsuC2I	CCSGG	1 cut(s)	738
AsuHPI	GGTGA	5 cut(s)	151, 226, 247, 274, 349
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	3 cut(s)	15, 337, 622
BalI	TGGCCA	2 cut(s)	113, 773
BanII	GRGCYC	3 cut(s)	90, 192, 810
BauI	CACGAG	1 cut(s)	537
BbrPI	CACGTG	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	4 cut(s)	90, 192, 351, 810
BbvCI	CCTCAGC	2 cut(s)	248, 836
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	4 cut(s)	239, 287, 573, 908
BceAI	ACGGC	5 cut(s)	185, 187, 343, 568, 745
BciT130I	CCWGG	2 cut(s)	23, 385
BcnI	CCSGG	1 cut(s)	738
BcoDI	GTCTC	2 cut(s)	232, 358
BcuI	ACTAGT	1 cut(s)	857
BfaI	CTAG	3 cut(s)	35, 803, 858
BfoI	RGCGCY	1 cut(s)	222
BisI	GCNGC	3 cut(s)	389, 502, 765
BlsI	GCNGC	3 cut(s)	390, 503, 766
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	3 cut(s)	23, 385, 738
Bme18I	GGWCC	3 cut(s)	15, 337, 622
BmeT110I	CYCGRG	1 cut(s)	558
BmgT120I	GGNCC	4 cut(s)	15, 337, 622, 731
BmiI	GGNNCC	1 cut(s)	624
BmrFI	CCNGG	3 cut(s)	23, 385, 738
BmrI	ACTGGG	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	860
Bpu10I	CCTNAGC	3 cut(s)	215, 248, 836
BpuMI	CCSGG	1 cut(s)	738
BsaAI	YACGTR	1 cut(s)	352
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	21, 569
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	7 cut(s)	32, 77, 107, 119, 149, 812, 842
Bsc4I	CCNNNNNNNGG	4 cut(s)	384, 571, 743, 837
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	5 cut(s)	17, 114, 134, 700, 748
Bse3DI	GCAATG	2 cut(s)	392, 774
BseBI	CCWGG	2 cut(s)	23, 385
BseDI	CCNNGG	2 cut(s)	21, 569
BseGI	GGATG	3 cut(s)	495, 565, 655
BseLI	CCNNNNNNNGG	4 cut(s)	384, 571, 743, 837
BseMI	GCAATG	2 cut(s)	392, 774
BseMII	CTCAG	4 cut(s)	206, 262, 804, 827
BseNI	ACTGG	5 cut(s)	17, 114, 134, 700, 748
BseRI	GAGGAG	3 cut(s)	53, 127, 262
BseXI	GCAGC	1 cut(s)	751
Bsh1236I	CGCG	2 cut(s)	244, 261
BshFI	GGCC	9 cut(s)	26, 47, 113, 291, 391, 488, 564, 732, 773
BsiHKAI	GWGCWC	4 cut(s)	90, 192, 351, 810
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	5 cut(s)	83, 91, 237, 398, 738
BslI	CCNNNNNNNGG	4 cut(s)	384, 571, 743, 837
BsmAI	GTCTC	2 cut(s)	232, 358
BsmBI	CGTCTC	1 cut(s)	232
BsnI	GGCC	9 cut(s)	26, 47, 113, 291, 391, 488, 564, 732, 773
BsoBI	CYCGRG	1 cut(s)	558
Bsp1286I	GDGCHC	4 cut(s)	90, 192, 351, 810
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	3 cut(s)	165, 450, 799
BspACI	CCGC	7 cut(s)	80, 259, 276, 388, 499, 502, 700
BspANI	GGCC	9 cut(s)	26, 47, 113, 291, 391, 488, 564, 732, 773
BspCNI	CTCAG	4 cut(s)	207, 261, 805, 828
BspFNI	CGCG	2 cut(s)	244, 261
BspLI	GGNNCC	1 cut(s)	624
BspPI	GGATC	1 cut(s)	445
BsrDI	GCAATG	2 cut(s)	392, 774
BsrFI	RCCGGY	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	525
BsrI	ACTGG	5 cut(s)	17, 114, 134, 700, 748
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	21, 569
BssMI	GATC	3 cut(s)	165, 450, 799
BssNI	GRCGYC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	569
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	23, 385
Bst4CI	ACNGT	3 cut(s)	73, 226, 337
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	352
BstC8I	GCNNGC	3 cut(s)	115, 242, 702
BstDEI	CTNAG	4 cut(s)	215, 248, 813, 836
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	3 cut(s)	495, 565, 655
BstFNI	CGCG	2 cut(s)	244, 261
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	3 cut(s)	221, 246, 263
BstKTI	GATC	3 cut(s)	168, 453, 802
BstMAI	GTCTC	2 cut(s)	232, 358
BstMBI	GATC	3 cut(s)	165, 450, 799
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 394, 589, 770
BstNI	CCWGG	2 cut(s)	23, 385
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	3 cut(s)	21, 383, 736
BstUI	CGCG	2 cut(s)	244, 261
BstV1I	GCAGC	1 cut(s)	751
BstV2I	GAAGAC	1 cut(s)	860
BstXI	CCANNNNNNTGG	1 cut(s)	781
BsuRI	GGCC	9 cut(s)	26, 47, 113, 291, 391, 488, 564, 732, 773
BtsCI	GGATG	3 cut(s)	495, 565, 655
BtsIMutI	CAGTG	2 cut(s)	127, 810
Cac8I	GCNNGC	3 cut(s)	115, 242, 702
CfoI	GCGC	3 cut(s)	221, 246, 263
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	4 cut(s)	15, 337, 622, 731
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	4 cut(s)	10, 526, 727, 741
CspCI	CAANNNNNGTGG	1 cut(s)	916
CviAII	CATG	3 cut(s)	310, 478, 757
CviQI	GTAC	4 cut(s)	10, 526, 727, 741
DdeI	CTNAG	4 cut(s)	215, 248, 813, 836
DpnI	GATC	3 cut(s)	167, 452, 801
DpnII	GATC	3 cut(s)	165, 450, 799
DraIII	CACNNNGTG	1 cut(s)	542
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	3 cut(s)	111, 389, 771
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EciI	GGCGGA	2 cut(s)	265, 488
Ecl136II	GAGCTC	3 cut(s)	88, 190, 808
Eco130I	CCWWGG	1 cut(s)	569
Eco24I	GRGCYC	3 cut(s)	90, 192, 810
Eco32I	GATATC	1 cut(s)	793
Eco47I	GGWCC	3 cut(s)	15, 337, 622
Eco53kI	GAGCTC	3 cut(s)	88, 190, 808
Eco72I	CACGTG	1 cut(s)	352
Eco88I	CYCGRG	1 cut(s)	558
Eco91I	GGTNACC	1 cut(s)	355
EcoICRI	GAGCTC	3 cut(s)	88, 190, 808
EcoO65I	GGTNACC	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	21, 383
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	569
EcoT38I	GRGCYC	3 cut(s)	90, 192, 810
ErhI	CCWWGG	1 cut(s)	569
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	3 cut(s)	313, 481, 760
FaiI	YATR	8 cut(s)	311, 479, 620, 647, 758, 789, 798, 890
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FatI	CATG	3 cut(s)	309, 477, 756
FauI	CCCGC	3 cut(s)	87, 266, 693
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	3 cut(s)	389, 502, 765
FokI	GGATG	3 cut(s)	482, 552, 662
FriOI	GRGCYC	3 cut(s)	90, 192, 810
Fsp4HI	GCNGC	3 cut(s)	389, 502, 765
FspBI	CTAG	3 cut(s)	35, 803, 858
GlaI	GCGC	3 cut(s)	220, 245, 262
GluI	GCNGC	3 cut(s)	389, 502, 765
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	9 cut(s)	26, 47, 113, 291, 391, 488, 564, 732, 773
HapII	CCGG	5 cut(s)	83, 91, 237, 398, 738
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	3 cut(s)	221, 246, 263
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	313, 481, 760
Hin6I	GCGC	3 cut(s)	219, 244, 261
HinP1I	GCGC	3 cut(s)	219, 244, 261
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	4 cut(s)	426, 508, 554, 575
HpaII	CCGG	5 cut(s)	83, 91, 237, 398, 738
HphI	GGTGA	5 cut(s)	151, 226, 247, 274, 349
Hpy166II	GTNNAC	4 cut(s)	178, 316, 528, 820
Hpy188I	TCNGA	3 cut(s)	105, 690, 832
Hpy188III	TCNNGA	6 cut(s)	430, 448, 512, 537, 558, 803
Hpy8I	GTNNAC	4 cut(s)	178, 316, 528, 820
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	5 cut(s)	41, 58, 295, 331, 388
HpyCH4III	ACNGT	3 cut(s)	73, 226, 337
HpyCH4IV	ACGT	3 cut(s)	351, 419, 611
HpyCH4V	TGCA	2 cut(s)	309, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 394, 589, 770
HpyF3I	CTNAG	4 cut(s)	215, 248, 813, 836
HpySE526I	ACGT	3 cut(s)	351, 419, 611
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	313, 481, 760
HspAI	GCGC	3 cut(s)	219, 244, 261
Kzo9I	GATC	3 cut(s)	165, 450, 799
LmnI	GCTCC	4 cut(s)	85, 93, 346, 902
Lsp1109I	GCAGC	1 cut(s)	751
MaeI	CTAG	3 cut(s)	35, 803, 858
MaeII	ACGT	3 cut(s)	351, 419, 611
MaeIII	GTNAC	2 cut(s)	331, 355
MalI	GATC	3 cut(s)	167, 452, 801
MboI	GATC	3 cut(s)	165, 450, 799
MboII	GAAGA	6 cut(s)	115, 413, 445, 865, 931, 934
MhlI	GDGCHC	4 cut(s)	90, 192, 351, 810
MlsI	TGGCCA	2 cut(s)	113, 773
MluCI	AATT	1 cut(s)	775
MluNI	TGGCCA	2 cut(s)	113, 773
MmeI	TCCRAC	2 cut(s)	321, 531
Mox20I	TGGCCA	2 cut(s)	113, 773
MroXI	GAANNNNTTC	1 cut(s)	662
MscI	TGGCCA	2 cut(s)	113, 773
Msp20I	TGGCCA	2 cut(s)	113, 773
MspI	CCGG	5 cut(s)	83, 91, 237, 398, 738
MspR9I	CCNGG	3 cut(s)	23, 385, 738
MvaI	CCWGG	2 cut(s)	23, 385
MvnI	CGCG	2 cut(s)	244, 261
MwoI	GCNNNNNNNGC	4 cut(s)	258, 394, 589, 770
NciI	CCSGG	1 cut(s)	738
NdeII	GATC	3 cut(s)	165, 450, 799
NlaIII	CATG	3 cut(s)	313, 481, 760
NlaIV	GGNNCC	1 cut(s)	624
NmuCI	GTSAC	2 cut(s)	331, 355
PaeR7I	CTCGAG	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	662
PfeI	GAWTC	4 cut(s)	426, 508, 554, 575
PkrI	GCNGC	3 cut(s)	390, 503, 766
PmaCI	CACGTG	1 cut(s)	352
PmlI	CACGTG	1 cut(s)	352
Ppu21I	YACGTR	1 cut(s)	352
Psp124BI	GAGCTC	3 cut(s)	90, 192, 810
Psp6I	CCWGG	2 cut(s)	21, 383
PspCI	CACGTG	1 cut(s)	352
PspEI	GGTNACC	1 cut(s)	355
PspGI	CCWGG	2 cut(s)	21, 383
PspN4I	GGNNCC	1 cut(s)	624
PspPI	GGNCC	4 cut(s)	15, 337, 622, 731
RsaI	GTAC	4 cut(s)	11, 527, 728, 742
RsaNI	GTAC	4 cut(s)	10, 526, 727, 741
SacI	GAGCTC	3 cut(s)	90, 192, 810
SalI	GTCGAC	1 cut(s)	314
SatI	GCNGC	3 cut(s)	389, 502, 765
Sau3AI	GATC	3 cut(s)	165, 450, 799
Sau96I	GGNCC	4 cut(s)	15, 337, 622, 731
ScaI	AGTACT	1 cut(s)	11
ScrFI	CCNGG	3 cut(s)	23, 385, 738
SduI	GDGCHC	4 cut(s)	90, 192, 351, 810
Sfr274I	CTCGAG	1 cut(s)	558
SinI	GGWCC	3 cut(s)	15, 337, 622
SlaI	CTCGAG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
SpeI	ACTAGT	1 cut(s)	857
Sse9I	AATT	1 cut(s)	775
SsiI	CCGC	7 cut(s)	80, 259, 276, 388, 499, 502, 700
SspMI	CTAG	3 cut(s)	35, 803, 858
SstI	GAGCTC	3 cut(s)	90, 192, 810
StyD4I	CCNGG	3 cut(s)	21, 383, 736
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	3 cut(s)	73, 226, 337
TaiI	ACGT	3 cut(s)	354, 422, 614
TaqI	TCGA	6 cut(s)	153, 168, 315, 559, 606, 869
TasI	AATT	1 cut(s)	775
TatI	WGTACW	2 cut(s)	9, 525
TauI	GCSGC	2 cut(s)	391, 504
TfiI	GAWTC	4 cut(s)	426, 508, 554, 575
TscAI	CASTG	2 cut(s)	134, 817
TseFI	GTSAC	2 cut(s)	331, 355
TseI	GCWGC	1 cut(s)	764
Tsp45I	GTSAC	2 cut(s)	331, 355
TspDTI	ATGAA	3 cut(s)	17, 463, 866
TspRI	CASTG	2 cut(s)	134, 817
VpaK11BI	GGWCC	3 cut(s)	15, 337, 622
XbaI	TCTAGA	1 cut(s)	802
XhoI	CTCGAG	1 cut(s)	558
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	662
XspI	CTAG	3 cut(s)	35, 803, 858
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.