Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013397

Physical Location & Seq

Genomic Coordinates Reverse (-)

16415705 .. 16418976

Gene Structure 3272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG106700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGTTAAAAACCCAACAATTCTTACCCCCTCTCCTAAAAAACCCATCAACTCCCTCTCCAAAACCCATCTCTCATATTCCATCATCTCATCAAAACCCATTTCTTAAAAAGCCAAGAACTCTGAAATCCTCACACATCACCCAATACACCATTTTTGAAAAAAAAAAAAAACCCAGAGATATGAAAGAGTACTGGACCTCCCTGGCCTCCCTTCTAGGAGTGTTGGCCTTCTGCCAGAGCCTCCTCCAAACCGTGTTCCCGCCGGAGCTCCGGTTCGCTTTTCTGAAACTGGCCAGCAAAATCTTCCACTGGTTCTCCTCCTACTACTACTTCGACATCACTGAGATCGACGGCGTGAACACCAACGAGCTCTACAACGCCGTCCAGCTCTACCTGAGCGCCACCGTCTCCATCACCGGCACGCGCCTCAGCCTCACCCGCGCCCTCAACTCCTCCGCCATCACCTTCGGCCTCTCCAACAACGACTGCATGGTCGACACCTTCAACGGCGTCACGGTCCTCTGGGAGCACGTGGTCACCCAGAGACAGAACCAGACCTTCTCCTGGCGGCCATTGCCGGAAGAGAAGCGAGGCTTCACATTGCGAATCAAGAAGAAAGACAAGTTCTTGATCCTCAACTCCTACTTGGACTTCATCATGGACAAGGCCAATGACATCCGCCGCAAGAATCAAGACAGGCTCTTGTACACGAACTCACGAGGTGGGTCGTTGGATTCTCGAGGCCATCCTTGGGAATCTGTGCCGTTCAAGCACCCAAGCACATTCGACACGTTGGCTATGGACCCAAAAGTGAAGCAGGAGATTATGGATGATTTGAAAGACTTCGCCAATGGACAGAGCTTTTATCAGAAAACTGGGCGGGCTTGGAAAAGAGGGTATCTTTTGTACGGCCCACCCGGTACTGGAAAATCAAGCATGATTGCTGCAATGGCCAATTTTCTGGGGTATGATATCTATGATCTAGAGCTCACTGAGGTTCACACCAACTCCGAGCTGAGGAAGTTGCTGATGAAGACTAGTTCCAAGTCGATTATTGTGATTGAGGATATAGATTGCTCCATCACTTTGACTAATAGGAAGAAGAACAATGGTGGTGGTGGTGGTGGTGGTGCAGCTATGAGGACTTACTATGATTCGCCGGAAATGAGAGGCGTTTCAGGGGAGGAGGGTGGTGGGAATTCGATTACGCTTTCGGGGTTGTTGAATTTTACTGATGGGTTGTGGTCTTGTTGTGGGACTGAGAGGATTTTCGTGTTTACGACGAATCATATTGAGAAGTTAGACCCTGCATTGCTGAGGAGTGGTAGGATGGATATGCATATATTCATGAGTCACTGTTCGTTCCCAGCGTTGAAGATTCTGTTGAAGAATTACTTGGGATTTCAGGAGGGTGATTTGGATGAGGAGATTGCGAAAGAGTTTGAAGAGGTTTTGGACAAGGCTGGGATGACTCCGGCTGATGTGAGTGAGGCTTTGATCAAGAATAGGCGCGATAAGGATAAGGCGGTGAGGGAATTGTTGGAGGTGTTGAAGGTGAAGGCAGAGAATAAGAACAAGAAGAGCAATGCAGGTTCAGCTGAGGAGGAAGAGGAGGAGCAGGAGAAGAGGGCATTGGAGAGTCCTAAAGTTGAAGGGTGTGACCTTGAGGAGGAGGACAACAGCTGCAAGAAAGGTGATGGAGATGATGATAAGGATCAGAAGCAAGATGATGAGAAAATAGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

582

Amino Acids

65.92

Weight (kDa)

6.64

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	86 - 178	1.4e-21	Domain associated at C-terminal with AAA
AAA	PF00004	300 - 450	4.8e-18	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	453 - 528	2.1e-12	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25835 AT4G30250 AT4G30250 AT5G57480
fragaria_vesca	FvH4_4g08330
malus_domestica	MD13G1255400.v1.1
prunus_persica	Prupe.1G086500_v2.0.a1
pyrus_communis	pycom13g22720
rosa_chinensis	RchiOBHm_Chr4g0402591
rosa_laevigata	RLG00000009064
rosa_multiflora	Rmu_co8332339.1_g000001 Rmu_sc0004921.1_g000012
rosa_roxburghii	Rroxscaffold_5G00347310
rosa_rugosa	Rorug04G0036900
rosa_samantha	Rh4AG114500 Rh4BG106800 Rh4DG106700
rosa_wichuraiana	Rw4G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	1580
AccI	GTMKAC	1 cut(s)	495
AccII	CGCG	3 cut(s)	424, 441, 1512
AciI	CCGC	8 cut(s)	260, 439, 456, 568, 679, 682, 880, 1526
AclWI	GGATC	2 cut(s)	625, 1722
AcoI	YGGCCR	3 cut(s)	291, 569, 951
AcsI	RAATTY	2 cut(s)	1198, 1225
AcvI	CACGTG	1 cut(s)	532
AcyI	GRCGYC	1 cut(s)	510
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	4 cut(s)	191, 707, 908, 922
AfiI	CCNNNNNNNGG	5 cut(s)	564, 751, 923, 1017, 1669
AflIII	ACRYGT	1 cut(s)	789
AhlI	ACTAGT	1 cut(s)	1037
AjnI	CCWGG	2 cut(s)	201, 563
AjuI	GAANNNNNNNTTGG	4 cut(s)	1379, 1411, 1616, 1648
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	9 cut(s)	268, 370, 388, 861, 988, 1015, 1136, 1598, 1683
AluI	AGCT	9 cut(s)	268, 370, 388, 861, 988, 1015, 1136, 1598, 1683
Alw21I	GWGCWC	4 cut(s)	270, 372, 531, 990
Alw26I	GTCTC	2 cut(s)	412, 538
AlwI	GGATC	2 cut(s)	625, 1722
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	9 cut(s)	204, 225, 291, 469, 569, 666, 742, 910, 951
ApeKI	GCWGC	3 cut(s)	944, 1133, 1683
ApoI	RAATTY	2 cut(s)	1198, 1225
Asp700I	GAANNNNTTC	1 cut(s)	842
AspLEI	GCGC	4 cut(s)	401, 426, 443, 1512
AspS9I	GGNCC	4 cut(s)	195, 517, 802, 911
AsuC2I	CCSGG	1 cut(s)	918
AsuHPI	GGTGA	9 cut(s)	130, 406, 427, 454, 529, 1424, 1540, 1567, 1706
AvaI	CYCGRG	1 cut(s)	738
AvaII	GGWCC	3 cut(s)	195, 517, 802
BalI	TGGCCA	2 cut(s)	293, 953
BanII	GRGCYC	3 cut(s)	270, 372, 990
BauI	CACGAG	1 cut(s)	717
BbrPI	CACGTG	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	1040
Bbv12I	GWGCWC	4 cut(s)	270, 372, 531, 990
BbvCI	CCTCAGC	4 cut(s)	428, 1016, 1316, 1599
BbvI	GCAGC	3 cut(s)	931, 1145, 1670
BceAI	ACGGC	5 cut(s)	365, 367, 523, 748, 925
BciT130I	CCWGG	2 cut(s)	203, 565
BclI	TGATCA	1 cut(s)	1497
BcnI	CCSGG	1 cut(s)	918
BcoDI	GTCTC	2 cut(s)	412, 538
BcuI	ACTAGT	1 cut(s)	1037
BfaI	CTAG	3 cut(s)	215, 983, 1038
BfoI	RGCGCY	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	1580
BisI	GCNGC	5 cut(s)	569, 682, 945, 1134, 1684
BlsI	GCNGC	5 cut(s)	570, 683, 946, 1135, 1685
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	3 cut(s)	203, 565, 918
Bme18I	GGWCC	3 cut(s)	195, 517, 802
BmeT110I	CYCGRG	1 cut(s)	738
BmgT120I	GGNCC	4 cut(s)	195, 517, 802, 911
BmiI	GGNNCC	1 cut(s)	804
BmrFI	CCNGG	3 cut(s)	203, 565, 918
BmrI	ACTGGG	1 cut(s)	885
BmuI	ACTGGG	1 cut(s)	885
BpiI	GAAGAC	1 cut(s)	1040
Bpu10I	CCTNAGC	5 cut(s)	395, 428, 1016, 1316, 1599
BpuEI	CTTGAG	1 cut(s)	1685
BpuMI	CCSGG	1 cut(s)	918
BsaAI	YACGTR	1 cut(s)	532
BsaBI	GATNNNNATC	1 cut(s)	1713
BsaHI	GRCGYC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	201, 749
BsaWI	WCCGGW	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	5 cut(s)	564, 751, 923, 1017, 1669
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	5 cut(s)	197, 294, 314, 880, 928
Bse3DI	GCAATG	5 cut(s)	572, 599, 954, 1310, 1591
Bse8I	GATNNNNATC	1 cut(s)	1713
BseBI	CCWGG	2 cut(s)	203, 565
BseDI	CCNNGG	2 cut(s)	201, 749
BseGI	GGATG	6 cut(s)	675, 745, 835, 1335, 1426, 1473
BseJI	GATNNNNATC	1 cut(s)	1713
BseLI	CCNNNNNNNGG	5 cut(s)	564, 751, 923, 1017, 1669
BseMI	GCAATG	5 cut(s)	572, 599, 954, 1310, 1591
BseMII	CTCAG	8 cut(s)	333, 386, 442, 984, 1007, 1251, 1307, 1590
BseNI	ACTGG	5 cut(s)	197, 294, 314, 880, 928
BseXI	GCAGC	3 cut(s)	931, 1145, 1670
BseYI	CCCAGC	2 cut(s)	1366, 1463
BsgI	GTGCAG	1 cut(s)	1152
Bsh1236I	CGCG	3 cut(s)	424, 441, 1512
BshFI	GGCC	9 cut(s)	206, 227, 293, 471, 571, 668, 744, 912, 953
BsiHKAI	GWGCWC	4 cut(s)	270, 372, 531, 990
BsiHKCI	CYCGRG	1 cut(s)	738
BsiSI	CCGG	7 cut(s)	263, 271, 417, 578, 918, 1160, 1475
BslFI	GGGAC	1 cut(s)	1270
BslI	CCNNNNNNNGG	5 cut(s)	564, 751, 923, 1017, 1669
BsmAI	GTCTC	2 cut(s)	412, 538
BsmBI	CGTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	1270
BsnI	GGCC	9 cut(s)	206, 227, 293, 471, 571, 668, 744, 912, 953
BsoBI	CYCGRG	1 cut(s)	738
Bsp1286I	GDGCHC	4 cut(s)	270, 372, 531, 990
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	5 cut(s)	345, 630, 979, 1497, 1714
BspACI	CCGC	8 cut(s)	260, 439, 456, 568, 679, 682, 880, 1526
BspANI	GGCC	9 cut(s)	206, 227, 293, 471, 571, 668, 744, 912, 953
BspCNI	CTCAG	8 cut(s)	334, 387, 441, 985, 1008, 1252, 1308, 1591
BspFNI	CGCG	3 cut(s)	424, 441, 1512
BspHI	TCATGA	1 cut(s)	1347
BspLI	GGNNCC	1 cut(s)	804
BspMI	ACCTGC	1 cut(s)	1580
BspPI	GGATC	2 cut(s)	625, 1722
BspQI	GCTCTTC	1 cut(s)	1574
BsrDI	GCAATG	5 cut(s)	572, 599, 954, 1310, 1591
BsrFI	RCCGGY	1 cut(s)	416
BsrGI	TGTACA	1 cut(s)	705
BsrI	ACTGG	5 cut(s)	197, 294, 314, 880, 928
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	201, 749
BssMI	GATC	5 cut(s)	345, 630, 979, 1497, 1714
BssNI	GRCGYC	1 cut(s)	510
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	1 cut(s)	749
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	203, 565
Bst4CI	ACNGT	4 cut(s)	253, 406, 517, 1358
Bst6I	CTCTTC	5 cut(s)	576, 1440, 1574, 1602, 1619
BstACI	GRCGYC	1 cut(s)	510
BstAUI	TGTACA	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	532
BstC8I	GCNNGC	3 cut(s)	295, 422, 882
BstDEI	CTNAG	8 cut(s)	342, 395, 428, 993, 1016, 1260, 1316, 1599
BstEII	GGTNACC	1 cut(s)	535
BstENI	CCTNNNNNAGG	1 cut(s)	1667
BstF5I	GGATG	6 cut(s)	675, 745, 835, 1335, 1426, 1473
BstFNI	CGCG	3 cut(s)	424, 441, 1512
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	4 cut(s)	401, 426, 443, 1512
BstKTI	GATC	5 cut(s)	348, 633, 982, 1500, 1717
BstMAI	GTCTC	2 cut(s)	412, 538
BstMBI	GATC	5 cut(s)	345, 630, 979, 1497, 1714
BstMWI	GCNNNNNNNGC	5 cut(s)	438, 574, 769, 950, 1595
BstNI	CCWGG	2 cut(s)	203, 565
BstPI	GGTNACC	1 cut(s)	535
BstSCI	CCNGG	3 cut(s)	201, 563, 916
BstUI	CGCG	3 cut(s)	424, 441, 1512
BstV1I	GCAGC	3 cut(s)	931, 1145, 1670
BstV2I	GAAGAC	1 cut(s)	1040
BstXI	CCANNNNNNTGG	1 cut(s)	961
BsuRI	GGCC	9 cut(s)	206, 227, 293, 471, 571, 668, 744, 912, 953
BtsCI	GGATG	6 cut(s)	675, 745, 835, 1335, 1426, 1473
BtsIMutI	CAGTG	4 cut(s)	307, 339, 990, 1354
BveI	ACCTGC	1 cut(s)	1580
Cac8I	GCNNGC	3 cut(s)	295, 422, 882
CciI	TCATGA	1 cut(s)	1347
CfoI	GCGC	4 cut(s)	401, 426, 443, 1512
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	4 cut(s)	195, 517, 802, 911
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	4 cut(s)	190, 706, 907, 921
CspCI	CAANNNNNGTGG	2 cut(s)	1096, 1131
CviAII	CATG	4 cut(s)	490, 658, 937, 1348
CviQI	GTAC	4 cut(s)	190, 706, 907, 921
DdeI	CTNAG	8 cut(s)	342, 395, 428, 993, 1016, 1260, 1316, 1599
DpnI	GATC	5 cut(s)	347, 632, 981, 1499, 1716
DpnII	GATC	5 cut(s)	345, 630, 979, 1497, 1714
DraIII	CACNNNGTG	1 cut(s)	722
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	3 cut(s)	291, 569, 951
Eam1104I	CTCTTC	5 cut(s)	576, 1440, 1574, 1602, 1619
EarI	CTCTTC	5 cut(s)	576, 1440, 1574, 1602, 1619
EciI	GGCGGA	2 cut(s)	445, 668
Ecl136II	GAGCTC	3 cut(s)	268, 370, 988
Eco130I	CCWWGG	1 cut(s)	749
Eco24I	GRGCYC	3 cut(s)	270, 372, 990
Eco32I	GATATC	1 cut(s)	973
Eco47I	GGWCC	3 cut(s)	195, 517, 802
Eco53kI	GAGCTC	3 cut(s)	268, 370, 988
Eco72I	CACGTG	1 cut(s)	532
Eco88I	CYCGRG	1 cut(s)	738
Eco91I	GGTNACC	1 cut(s)	535
EcoICRI	GAGCTC	3 cut(s)	268, 370, 988
EcoNI	CCTNNNNNAGG	1 cut(s)	1667
EcoO65I	GGTNACC	1 cut(s)	535
EcoRI	GAATTC	1 cut(s)	1198
EcoRII	CCWGG	2 cut(s)	201, 563
EcoRV	GATATC	1 cut(s)	973
EcoT14I	CCWWGG	1 cut(s)	749
EcoT22I	ATGCAT	1 cut(s)	1341
EcoT38I	GRGCYC	3 cut(s)	270, 372, 990
ErhI	CCWWGG	1 cut(s)	749
Esp3I	CGTCTC	1 cut(s)	412
FaeI	CATG	4 cut(s)	493, 661, 940, 1351
FalI	AAGNNNNNCTT	4 cut(s)	578, 610, 1379, 1411
FaqI	GGGAC	1 cut(s)	1270
FatI	CATG	4 cut(s)	489, 657, 936, 1347
FauI	CCCGC	3 cut(s)	267, 446, 873
FbaI	TGATCA	1 cut(s)	1497
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	5 cut(s)	569, 682, 945, 1134, 1684
FokI	GGATG	6 cut(s)	662, 732, 842, 1342, 1433, 1480
FriOI	GRGCYC	3 cut(s)	270, 372, 990
Fsp4HI	GCNGC	5 cut(s)	569, 682, 945, 1134, 1684
FspBI	CTAG	3 cut(s)	215, 983, 1038
GlaI	GCGC	4 cut(s)	400, 425, 442, 1511
GluI	GCNGC	5 cut(s)	569, 682, 945, 1134, 1684
GsaI	CCCAGC	2 cut(s)	1370, 1467
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	9 cut(s)	206, 227, 293, 471, 571, 668, 744, 912, 953
HapII	CCGG	7 cut(s)	263, 271, 417, 578, 918, 1160, 1475
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	4 cut(s)	401, 426, 443, 1512
Hin1I	GRCGYC	1 cut(s)	510
Hin1II	CATG	4 cut(s)	493, 661, 940, 1351
Hin6I	GCGC	4 cut(s)	399, 424, 441, 1510
HinP1I	GCGC	4 cut(s)	399, 424, 441, 1510
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HpaII	CCGG	7 cut(s)	263, 271, 417, 578, 918, 1160, 1475
HphI	GGTGA	9 cut(s)	130, 406, 427, 454, 529, 1424, 1540, 1567, 1706
Hpy166II	GTNNAC	5 cut(s)	358, 496, 708, 1000, 1278
Hpy188I	TCNGA	5 cut(s)	123, 285, 870, 1012, 1719
Hpy188III	TCNNGA	9 cut(s)	610, 628, 692, 717, 738, 983, 1348, 1406, 1501
Hpy8I	GTNNAC	5 cut(s)	358, 496, 708, 1000, 1278
Hpy99I	CGWCG	2 cut(s)	353, 1285
HpyAV	CCTTC	8 cut(s)	221, 238, 475, 511, 568, 1546, 1552, 1646
HpyCH4III	ACNGT	4 cut(s)	253, 406, 517, 1358
HpyCH4IV	ACGT	2 cut(s)	531, 791
HpyCH4V	TGCA	7 cut(s)	489, 947, 1133, 1310, 1339, 1589, 1686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	438, 574, 769, 950, 1595
HpyF3I	CTNAG	8 cut(s)	342, 395, 428, 993, 1016, 1260, 1316, 1599
HpySE526I	ACGT	2 cut(s)	531, 791
Hsp92I	GRCGYC	1 cut(s)	510
Hsp92II	CATG	4 cut(s)	493, 661, 940, 1351
HspAI	GCGC	4 cut(s)	399, 424, 441, 1510
Ksp22I	TGATCA	1 cut(s)	1497
Kzo9I	GATC	5 cut(s)	345, 630, 979, 1497, 1714
LguI	GCTCTTC	1 cut(s)	1574
LmnI	GCTCC	5 cut(s)	265, 273, 526, 1082, 1615
Lsp1109I	GCAGC	3 cut(s)	931, 1145, 1670
MaeI	CTAG	3 cut(s)	215, 983, 1038
MaeII	ACGT	2 cut(s)	531, 791
MaeIII	GTNAC	4 cut(s)	511, 535, 1352, 1658
MalI	GATC	5 cut(s)	347, 632, 981, 1499, 1716
MboI	GATC	5 cut(s)	345, 630, 979, 1497, 1714
MhlI	GDGCHC	4 cut(s)	270, 372, 531, 990
MlsI	TGGCCA	2 cut(s)	293, 953
MluCI	AATT	6 cut(s)	17, 955, 1198, 1225, 1390, 1535
MluNI	TGGCCA	2 cut(s)	293, 953
MlyI	GAGTC	3 cut(s)	1360, 1465, 1648
MmeI	TCCRAC	3 cut(s)	501, 711, 1521
Mox20I	TGGCCA	2 cut(s)	293, 953
Mph1103I	ATGCAT	1 cut(s)	1341
MroXI	GAANNNNTTC	1 cut(s)	842
MscI	TGGCCA	2 cut(s)	293, 953
MseI	TTAA	2 cut(s)	5, 105
Msp20I	TGGCCA	2 cut(s)	293, 953
MspA1I	CMGCKG	2 cut(s)	1598, 1683
MspI	CCGG	7 cut(s)	263, 271, 417, 578, 918, 1160, 1475
MspR9I	CCNGG	3 cut(s)	203, 565, 918
MvaI	CCWGG	2 cut(s)	203, 565
MvnI	CGCG	3 cut(s)	424, 441, 1512
MwoI	GCNNNNNNNGC	5 cut(s)	438, 574, 769, 950, 1595
NciI	CCSGG	1 cut(s)	918
NdeII	GATC	5 cut(s)	345, 630, 979, 1497, 1714
NlaIII	CATG	4 cut(s)	493, 661, 940, 1351
NlaIV	GGNNCC	1 cut(s)	804
NmuCI	GTSAC	4 cut(s)	511, 535, 1352, 1658
NsiI	ATGCAT	1 cut(s)	1341
PaeR7I	CTCGAG	1 cut(s)	738
PagI	TCATGA	1 cut(s)	1347
PciSI	GCTCTTC	1 cut(s)	1574
PcsI	WCGNNNNNNNCGW	1 cut(s)	1367
PdmI	GAANNNNTTC	1 cut(s)	842
PfeI	GAWTC	7 cut(s)	606, 688, 734, 755, 1154, 1285, 1378
PkrI	GCNGC	5 cut(s)	570, 683, 946, 1135, 1685
PleI	GAGTC	3 cut(s)	1359, 1465, 1647
PmaCI	CACGTG	1 cut(s)	532
PmlI	CACGTG	1 cut(s)	532
PpsI	GAGTC	3 cut(s)	1359, 1465, 1647
Ppu21I	YACGTR	1 cut(s)	532
Psp124BI	GAGCTC	3 cut(s)	270, 372, 990
Psp6I	CCWGG	2 cut(s)	201, 563
PspCI	CACGTG	1 cut(s)	532
PspEI	GGTNACC	1 cut(s)	535
PspFI	CCCAGC	2 cut(s)	1366, 1463
PspGI	CCWGG	2 cut(s)	201, 563
PspN4I	GGNNCC	1 cut(s)	804
PspPI	GGNCC	4 cut(s)	195, 517, 802, 911
PvuII	CAGCTG	2 cut(s)	1598, 1683
RsaI	GTAC	4 cut(s)	191, 707, 908, 922
RsaNI	GTAC	4 cut(s)	190, 706, 907, 921
SacI	GAGCTC	3 cut(s)	270, 372, 990
SalI	GTCGAC	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	1574
SaqAI	TTAA	2 cut(s)	5, 105
SatI	GCNGC	5 cut(s)	569, 682, 945, 1134, 1684
Sau3AI	GATC	5 cut(s)	345, 630, 979, 1497, 1714
Sau96I	GGNCC	4 cut(s)	195, 517, 802, 911
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	3 cut(s)	1360, 1465, 1648
ScrFI	CCNGG	3 cut(s)	203, 565, 918
SduI	GDGCHC	4 cut(s)	270, 372, 531, 990
Sfr274I	CTCGAG	1 cut(s)	738
SinI	GGWCC	3 cut(s)	195, 517, 802
SlaI	CTCGAG	1 cut(s)	738
SmlI	CTYRAG	2 cut(s)	738, 1664
SmoI	CTYRAG	2 cut(s)	738, 1664
SpeI	ACTAGT	1 cut(s)	1037
Sse9I	AATT	6 cut(s)	17, 955, 1198, 1225, 1390, 1535
SsiI	CCGC	8 cut(s)	260, 439, 456, 568, 679, 682, 880, 1526
SspMI	CTAG	3 cut(s)	215, 983, 1038
SstI	GAGCTC	3 cut(s)	270, 372, 990
StyD4I	CCNGG	3 cut(s)	201, 563, 916
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	4 cut(s)	253, 406, 517, 1358
TaiI	ACGT	2 cut(s)	534, 794
TaqI	TCGA	7 cut(s)	333, 348, 495, 739, 786, 1049, 1202
TasI	AATT	6 cut(s)	17, 955, 1198, 1225, 1390, 1535
TatI	WGTACW	2 cut(s)	189, 705
TauI	GCSGC	2 cut(s)	571, 684
TfiI	GAWTC	7 cut(s)	606, 688, 734, 755, 1154, 1285, 1378
Tru1I	TTAA	2 cut(s)	5, 105
Tru9I	TTAA	2 cut(s)	5, 105
TscAI	CASTG	4 cut(s)	314, 346, 997, 1361
TseFI	GTSAC	4 cut(s)	511, 535, 1352, 1658
TseI	GCWGC	3 cut(s)	944, 1133, 1683
Tsp45I	GTSAC	4 cut(s)	511, 535, 1352, 1658
TspDTI	ATGAA	4 cut(s)	197, 643, 1046, 1336
TspRI	CASTG	4 cut(s)	314, 346, 997, 1361
VpaK11BI	GGWCC	3 cut(s)	195, 517, 802
XagI	CCTNNNNNAGG	1 cut(s)	1667
XapI	RAATTY	2 cut(s)	1198, 1225
XbaI	TCTAGA	1 cut(s)	982
XhoI	CTCGAG	1 cut(s)	738
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	842
XspI	CTAG	3 cut(s)	215, 983, 1038
ZrmI	AGTACT	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	1341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.