AT5G57500

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013382
Physical Location & Seq
Reverse (-)
23286197 .. 23287739
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57500.1

Sequence Viewer

Length: 957 bp
ATGAAATCTTCTCCAAGATCAGAAGGAAGAAAGTTCATTATCCCTTCTTTCTTCTTCATCATAGCTCTTTGTGTACTAGCTTTCATCAACGAGATCAGATTCGATAGCTTATTGAGTTTTGGAAGATGTGCTTTGTCAAATGTTCCTATGAATAATGGTTCATCAGAGACTCCATTGTTGTCTTCTTCTCCTGTTGATGATGAGATTAGGATTCTTATTGGAATCCTTACACTTCCTGATCAGTATTCACGTCGCCATTTTCTCCGGATGATCTACGGGACACAAAATGTTCCGGACGGTGTTAAGGTTGATGTGAAGTTTGTGTTCTGTAATTTGACTAAAGAAGACCAGAAAGTGCTTGTTGCTTTGGAGATTATGCGTTATGATGACATCATTATACTCAACTGCAATGAGAATATGAACAAAGGCAAGACTTACACATACTTCTCAAGCTTACCAGACATATTCAATGAGACCGATGCACAAAAACCACCGTACCATTACGTAATGAAAGCCGACGACGACACATACATAAGACTAGAAAGTCTCGTTGCATCTTTGAGACCACTCCCTCGAGAAGATCTTTACTACGGCTATGTAATTCCATGTCCAAGCATGGACCCATTTGTTCATTACATGTCAGGAATGGGTTACTTAGTGTCATGGGATATTGCGGTTTGGCTCAAAGACTCGGAAATTCCCAAGAAACATCTAGAAGGTCCTGAAGACAAAGTGTTTGGCGATTGGATTCGAGAAGGAAGACGAGGAAAAAACCGGTTTAACGCTAAGTGGTCCATGTATAATTTCCCTGAGCCACCGACTAGATGCACACATGAGCTTTGGCCAGACACTATTGCCGTTCATTTGTTAAAGAACCAAGAGAAGTGGATACGTACATTGAACTATTTCAATGTTACTAGCAATCTCAAGCCTTCTAAACTATACCACATACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

318

Amino Acids

36.96

Weight (kDa)

7.04

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 83 - 201 5.1e-08 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57500
fragaria_vesca FvH4_4g09410
malus_domestica MD13G1256400.v1.1
prunus_persica Prupe.1G086900_v2.0.a1 Prupe.1G087000_v2.0.a1
pyrus_communis pycom13g22010
rosa_chinensis RchiOBHm_Chr4g0402651
rosa_laevigata RLG00000009054
rosa_multiflora Rmu_sc0009850.1_g000009 Rmu_sc0013411.1_g000002
rosa_roxburghii Rroxscaffold_5G00347400
rosa_rugosa Rorug04G0037400
rosa_samantha Rh4AG115000 Rh4BG107600 Rh4CG121900 Rh4DG107400
rosa_wichuraiana Rw0G015100 Rw4G009170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 543
AccIII TCCGGA 2 cut(s) 264, 292
AciI CCGC 1 cut(s) 674
AcoI YGGCCR 1 cut(s) 842
AcsI RAATTY 1 cut(s) 696
AcuI CTGAAG 1 cut(s) 744
AfaI GTAC 3 cut(s) 75, 497, 895
AflIII ACRYGT 1 cut(s) 636
AgeI ACCGGT 1 cut(s) 774
AgsI TTSAA 3 cut(s) 469, 901, 910
AjiI CACGTC 1 cut(s) 251
AluBI AGCT 5 cut(s) 65, 80, 108, 453, 838
AluI AGCT 5 cut(s) 65, 80, 108, 453, 838
Alw26I GTCTC 4 cut(s) 161, 467, 551, 556
Ama87I CYCGRG 1 cut(s) 573
Aor13HI TCCGGA 2 cut(s) 264, 292
AoxI GGCC 1 cut(s) 842
ApoI RAATTY 1 cut(s) 696
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
AsiGI ACCGGT 1 cut(s) 774
Asp700I GAANNNNTTC 1 cut(s) 905
AspS9I GGNCC 3 cut(s) 619, 719, 792
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 3 cut(s) 619, 719, 792
BaeI ACNNNNGTAYC 2 cut(s) 479, 512
BalI TGGCCA 1 cut(s) 844
BbsI GAAGAC 4 cut(s) 174, 351, 732, 766
BceAI ACGGC 2 cut(s) 607, 842
BciVI GTATCC 1 cut(s) 882
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 4 cut(s) 161, 467, 551, 556
BfaI CTAG 5 cut(s) 77, 539, 713, 822, 918
BfuI GTATCC 1 cut(s) 882
BglII AGATCT 1 cut(s) 580
Bme18I GGWCC 3 cut(s) 619, 719, 792
BmeT110I CYCGRG 1 cut(s) 573
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 619, 719, 792
BmiI GGNNCC 1 cut(s) 621
BmsI GCATC 3 cut(s) 469, 563, 815
BpiI GAAGAC 4 cut(s) 174, 351, 732, 766
Bpu10I CCTNAGC 1 cut(s) 810
BpuEI CTTGAG 2 cut(s) 433, 911
BsaAI YACGTR 2 cut(s) 505, 893
BsaI GGTCTC 2 cut(s) 467, 556
BsaWI WCCGGW 3 cut(s) 264, 292, 774
Bse118I RCCGGY 1 cut(s) 774
Bse3DI GCAATG 1 cut(s) 415
BseAI TCCGGA 2 cut(s) 264, 292
BseGI GGATG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 801
BshFI GGCC 1 cut(s) 844
BshTI ACCGGT 1 cut(s) 774
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 3 cut(s) 265, 293, 775
BslFI GGGAC 1 cut(s) 292
BsmAI GTCTC 4 cut(s) 161, 467, 551, 556
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 1 cut(s) 844
Bso31I GGTCTC 2 cut(s) 467, 556
BsoBI CYCGRG 1 cut(s) 573
Bsp13I TCCGGA 2 cut(s) 264, 292
Bsp143I GATC 5 cut(s) 17, 93, 238, 270, 580
BspACI CCGC 1 cut(s) 674
BspANI GGCC 1 cut(s) 844
BspCNI CTCAG 1 cut(s) 802
BspEI TCCGGA 2 cut(s) 264, 292
BspLI GGNNCC 1 cut(s) 621
BspTNI GGTCTC 2 cut(s) 467, 556
BsrDI GCAATG 1 cut(s) 415
BsrFI RCCGGY 1 cut(s) 774
BssAI RCCGGY 1 cut(s) 774
BssMI GATC 5 cut(s) 17, 93, 238, 270, 580
Bst4CI ACNGT 3 cut(s) 299, 495, 954
BstBAI YACGTR 2 cut(s) 505, 893
BstDEI CTNAG 3 cut(s) 655, 786, 810
BstF5I GGATG 1 cut(s) 273
BstKTI GATC 5 cut(s) 20, 96, 241, 273, 583
BstMAI GTCTC 4 cut(s) 161, 467, 551, 556
BstMBI GATC 5 cut(s) 17, 93, 238, 270, 580
BstNSI RCATGY 1 cut(s) 640
BstSNI TACGTA 2 cut(s) 505, 893
BstV2I GAAGAC 4 cut(s) 174, 351, 732, 766
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BsuI GTATCC 1 cut(s) 882
BsuRI GGCC 1 cut(s) 844
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 774
Cfr13I GGNCC 3 cut(s) 619, 719, 792
Csp6I GTAC 3 cut(s) 74, 496, 894
CspAI ACCGGT 1 cut(s) 774
CspCI CAANNNNNGTGG 2 cut(s) 866, 901
CviAII CATG 6 cut(s) 606, 616, 637, 663, 796, 833
CviQI GTAC 3 cut(s) 74, 496, 894
DdeI CTNAG 3 cut(s) 655, 786, 810
DpnI GATC 5 cut(s) 19, 95, 240, 272, 582
DpnII GATC 5 cut(s) 17, 93, 238, 270, 580
DrdI GACNNNNNNGTC 1 cut(s) 543
DseDI GACNNNNNNGTC 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 842
Eco105I TACGTA 2 cut(s) 505, 893
Eco31I GGTCTC 2 cut(s) 467, 556
Eco47I GGWCC 3 cut(s) 619, 719, 792
Eco57I CTGAAG 1 cut(s) 744
Eco88I CYCGRG 1 cut(s) 573
EcoO109I RGGNCCY 1 cut(s) 719
FaeI CATG 6 cut(s) 609, 619, 640, 666, 799, 836
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FaqI GGGAC 1 cut(s) 292
FatI CATG 6 cut(s) 605, 615, 636, 662, 795, 832
FbaI TGATCA 1 cut(s) 238
FokI GGATG 1 cut(s) 280
FspBI CTAG 5 cut(s) 77, 539, 713, 822, 918
HaeIII GGCC 1 cut(s) 844
HapII CCGG 3 cut(s) 265, 293, 775
Hin1II CATG 6 cut(s) 609, 619, 640, 666, 799, 836
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 6 cut(s) 99, 169, 211, 222, 689, 748
HpaII CCGG 3 cut(s) 265, 293, 775
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 4 cut(s) 22, 98, 166, 694
Hpy188III TCNNGA 8 cut(s) 236, 265, 293, 575, 642, 713, 722, 752
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 3 cut(s) 255, 521, 524
HpyAV CCTTC 5 cut(s) 17, 54, 710, 749, 942
HpyCH4III ACNGT 3 cut(s) 299, 495, 954
HpyCH4IV ACGT 3 cut(s) 250, 504, 892
HpyCH4V TGCA 4 cut(s) 408, 482, 554, 828
HpyF3I CTNAG 3 cut(s) 655, 786, 810
HpySE526I ACGT 3 cut(s) 250, 504, 892
Hsp92II CATG 6 cut(s) 609, 619, 640, 666, 799, 836
Kpn2I TCCGGA 2 cut(s) 264, 292
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 5 cut(s) 17, 93, 238, 270, 580
LweI GCATC 3 cut(s) 469, 563, 815
MaeI CTAG 5 cut(s) 77, 539, 713, 822, 918
MaeII ACGT 3 cut(s) 250, 504, 892
MaeIII GTNAC 2 cut(s) 650, 913
MalI GATC 5 cut(s) 19, 95, 240, 272, 582
MboI GATC 5 cut(s) 17, 93, 238, 270, 580
MflI RGATCY 1 cut(s) 580
MlsI TGGCCA 1 cut(s) 844
MluCI AATT 4 cut(s) 331, 600, 696, 802
MluNI TGGCCA 1 cut(s) 844
MlyI GAGTC 2 cut(s) 163, 683
MnlI CCTC 2 cut(s) 582, 758
Mox20I TGGCCA 1 cut(s) 844
MroI TCCGGA 2 cut(s) 264, 292
MroXI GAANNNNTTC 1 cut(s) 905
MscI TGGCCA 1 cut(s) 844
MseI TTAA 3 cut(s) 303, 780, 869
Msp20I TGGCCA 1 cut(s) 844
MspI CCGG 3 cut(s) 265, 293, 775
NdeII GATC 5 cut(s) 17, 93, 238, 270, 580
NlaIII CATG 6 cut(s) 609, 619, 640, 666, 799, 836
NlaIV GGNNCC 1 cut(s) 621
NspI RCATGY 1 cut(s) 640
PaeR7I CTCGAG 1 cut(s) 573
PciI ACATGT 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 4 cut(s) 99, 211, 222, 748
PinAI ACCGGT 1 cut(s) 774
PleI GAGTC 2 cut(s) 163, 683
PpsI GAGTC 2 cut(s) 163, 683
Ppu21I YACGTR 2 cut(s) 505, 893
PpuMI RGGWCCY 1 cut(s) 719
PscI ACATGT 1 cut(s) 636
Psp5II RGGWCCY 1 cut(s) 719
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 3 cut(s) 619, 719, 792
PspPPI RGGWCCY 1 cut(s) 719
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 3 cut(s) 75, 497, 895
RsaNI GTAC 3 cut(s) 74, 496, 894
SaqAI TTAA 3 cut(s) 303, 780, 869
Sau3AI GATC 5 cut(s) 17, 93, 238, 270, 580
Sau96I GGNCC 3 cut(s) 619, 719, 792
SchI GAGTC 2 cut(s) 163, 683
SfaNI GCATC 3 cut(s) 469, 563, 815
Sfr274I CTCGAG 1 cut(s) 573
SinI GGWCC 3 cut(s) 619, 719, 792
SlaI CTCGAG 1 cut(s) 573
SmlI CTYRAG 3 cut(s) 448, 573, 926
SmoI CTYRAG 3 cut(s) 448, 573, 926
SnaBI TACGTA 2 cut(s) 505, 893
Sse9I AATT 4 cut(s) 331, 600, 696, 802
SsiI CCGC 1 cut(s) 674
SspMI CTAG 5 cut(s) 77, 539, 713, 822, 918
TaaI ACNGT 3 cut(s) 299, 495, 954
TaiI ACGT 3 cut(s) 253, 507, 895
TaqI TCGA 3 cut(s) 102, 574, 751
TaqII GACCGA 1 cut(s) 491
TasI AATT 4 cut(s) 331, 600, 696, 802
TatI WGTACW 1 cut(s) 73
TfiI GAWTC 4 cut(s) 99, 211, 222, 748
Tru1I TTAA 3 cut(s) 303, 780, 869
Tru9I TTAA 3 cut(s) 303, 780, 869
VpaK11BI GGWCC 3 cut(s) 619, 719, 792
XapI RAATTY 1 cut(s) 696
XbaI TCTAGA 1 cut(s) 712
XceI RCATGY 1 cut(s) 640
XhoI CTCGAG 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 5 cut(s) 77, 539, 713, 822, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.