FvH4_4g09410

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013382
Physical Location & Seq
Forward (+)
11132930 .. 11134416
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09410.t1

Sequence Viewer

Length: 966 bp
ATGAAGACTTCAAAGTCAGACCGGCGACGGTTCATCATTTCTTCTTTCTTCTTCATTTGTTTCCTCTGTGCCTTGGCTTCTATAAACGAATTAAGGTTTGATAGTCTTCTGAAGTTTGGTCGCTGTGCTCTTACAAAAATCAACTCTCCTTCTGAGATATACAAGTCCTCATCGAGCACCTTGATCGAAACCCAGAAGACTTCCTCTGAAGATGAAATTCGTGTACTGTTTGGCATTCTAACCCTTCCAGATCAATACCAACGCCGACACTTCCTGCGTTTAATCTATGGCACTCAGAATCCGGTGGGGGCTAAAGTGGACGTGAAGTTTGTGTTCTGCAACCTCACAAAGGAAGACCAGAAGGTACTCGTTGCATTAGAAATAATGCGTTACAATGACATTATTATACTGAATTGCCAGGAGAATATGAACAAGGGCAAGACTTACACATACTTTTCAAGCTTGCCGGAGATTTTCAACAACACAGATGGGGTGTATCCACCTTACCATTATGTAATGAAAGCCGATGATGATGCTTACTTTCGGCTTCAAAGCTTGGTCGACTCTTTGAAGCCTTTGCCTAGAGAAGACTTGTACTATGGCTATGTCATTCCATGCCCAAGCATGGACCCTTATGTGCATTACATGTCTGGAATGGGGTACTTGATATCTTGGGATATAGTTGAGTGGATCAGAGACTCGGATATCCCCAAGAATCAGTTGGAAGGCCCCGAGGATAAAGTTTTTGGCGAGTGGATTAGAAATGGGCATCGTGCTAAGAATAGGTTCAACGCTAAGTGGGGGATGTACAATTTTCCTGAGCCACCTACAACATGTACTCATGAGCTTTGGCCGGAAACGATTGCAGTTCATTTGTTGAAGACTCAGGAGAAGTGGATTCGGACGTTGAAATACTTCAATGTCACTGATAATCTCAAGCCATCCAAATTGTATCACATACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

322

Amino Acids

37.64

Weight (kDa)

8.32

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 88 - 204 1.1e-07 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57500
fragaria_vesca FvH4_4g09410
malus_domestica MD13G1256400.v1.1
prunus_persica Prupe.1G086900_v2.0.a1 Prupe.1G087000_v2.0.a1
pyrus_communis pycom13g22010
rosa_chinensis RchiOBHm_Chr4g0402651
rosa_laevigata RLG00000009054
rosa_multiflora Rmu_sc0009850.1_g000009 Rmu_sc0013411.1_g000002
rosa_roxburghii Rroxscaffold_5G00347400
rosa_rugosa Rorug04G0037400
rosa_samantha Rh4AG115000 Rh4BG107600 Rh4CG121900 Rh4DG107400
rosa_wichuraiana Rw0G015100 Rw4G009170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 561
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 1 cut(s) 851
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 2 cut(s) 131, 228
AfaI GTAC 6 cut(s) 225, 366, 596, 662, 809, 838
AfiI CCNNNNNNNGG 2 cut(s) 349, 625
AflIII ACRYGT 2 cut(s) 645, 833
AgsI TTSAA 9 cut(s) 12, 459, 478, 551, 571, 790, 880, 910, 919
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 3 cut(s) 462, 555, 847
AluI AGCT 3 cut(s) 462, 555, 847
Alw21I GWGCWC 2 cut(s) 130, 179
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 731
AoxI GGCC 2 cut(s) 727, 851
ApoI RAATTY 1 cut(s) 216
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
Asp700I GAANNNNTTC 2 cut(s) 785, 914
AspS9I GGNCC 2 cut(s) 628, 728
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 1 cut(s) 628
BbsI GAAGAC 6 cut(s) 11, 98, 203, 360, 594, 887
Bbv12I GWGCWC 2 cut(s) 130, 179
BccI CCATC 2 cut(s) 482, 949
BcgI CGANNNNNNTGC 4 cut(s) 166, 200, 515, 549
BciT130I CCWGG 1 cut(s) 419
BciVI GTATCC 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 690
BfaI CTAG 1 cut(s) 582
BfuI GTATCC 1 cut(s) 507
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 628
BmeT110I CYCGRG 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 628, 728
BmiI GGNNCC 2 cut(s) 630, 730
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 2 cut(s) 523, 778
BpiI GAAGAC 6 cut(s) 11, 98, 203, 360, 594, 887
Bpu10I CCTNAGC 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 920
BsaJI CCNNGG 2 cut(s) 72, 732
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 625
Bse118I RCCGGY 1 cut(s) 21
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 2 cut(s) 72, 732
BseGI GGATG 2 cut(s) 810, 941
BseLI CCNNNNNNNGG 2 cut(s) 349, 625
BseMII CTCAG 4 cut(s) 144, 308, 810, 899
BshFI GGCC 2 cut(s) 729, 853
BsiHKAI GWGCWC 2 cut(s) 130, 179
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 4 cut(s) 22, 302, 467, 854
BslI CCNNNNNNNGG 2 cut(s) 349, 625
BsmAI GTCTC 1 cut(s) 690
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 2 cut(s) 729, 853
BsoBI CYCGRG 1 cut(s) 731
Bsp1286I GDGCHC 2 cut(s) 130, 179
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 3 cut(s) 183, 250, 690
BspANI GGCC 2 cut(s) 729, 853
BspCNI CTCAG 4 cut(s) 145, 307, 811, 898
BspHI TCATGA 1 cut(s) 841
BspLI GGNNCC 2 cut(s) 630, 730
BspPI GGATC 1 cut(s) 698
BsrFI RCCGGY 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 807
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 72, 732
BssMI GATC 3 cut(s) 183, 250, 690
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 2 cut(s) 30, 228
BstAUI TGTACA 1 cut(s) 807
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 6 cut(s) 153, 294, 777, 795, 819, 885
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 2 cut(s) 810, 941
BstKTI GATC 3 cut(s) 186, 253, 693
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 3 cut(s) 183, 250, 690
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 2 cut(s) 649, 837
BstSCI CCNGG 1 cut(s) 417
BstV2I GAAGAC 6 cut(s) 11, 98, 203, 360, 594, 887
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 2 cut(s) 729, 853
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 810, 941
BtsIMutI CAGTG 1 cut(s) 924
Cac8I GCNNGC 1 cut(s) 464
CciI TCATGA 1 cut(s) 841
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 628, 728
Csp6I GTAC 6 cut(s) 224, 365, 595, 661, 808, 837
CviAII CATG 5 cut(s) 615, 625, 646, 834, 842
CviQI GTAC 6 cut(s) 224, 365, 595, 661, 808, 837
DdeI CTNAG 6 cut(s) 153, 294, 777, 795, 819, 885
DpnI GATC 3 cut(s) 185, 252, 692
DpnII GATC 3 cut(s) 183, 250, 690
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 851
Eco130I CCWWGG 1 cut(s) 72
Eco32I GATATC 2 cut(s) 669, 706
Eco47I GGWCC 1 cut(s) 628
Eco57I CTGAAG 2 cut(s) 131, 228
Eco88I CYCGRG 1 cut(s) 731
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 2 cut(s) 669, 706
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 5 cut(s) 618, 628, 649, 837, 845
FatI CATG 5 cut(s) 614, 624, 645, 833, 841
FblI GTMKAC 1 cut(s) 561
FokI GGATG 2 cut(s) 817, 928
FspBI CTAG 1 cut(s) 582
HaeIII GGCC 2 cut(s) 729, 853
HapII CCGG 4 cut(s) 22, 302, 467, 854
Hin1II CATG 5 cut(s) 618, 628, 649, 837, 845
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 2 cut(s) 460, 553
HinfI GANTC 6 cut(s) 298, 563, 698, 715, 883, 898
HpaII CCGG 4 cut(s) 22, 302, 467, 854
Hpy166II GTNNAC 3 cut(s) 224, 319, 562
Hpy188I TCNGA 8 cut(s) 19, 111, 154, 208, 297, 695, 703, 903
Hpy188III TCNNGA 5 cut(s) 248, 651, 818, 842, 887
Hpy8I GTNNAC 3 cut(s) 224, 319, 562
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 4 cut(s) 159, 254, 355, 719
HpyCH4III ACNGT 2 cut(s) 30, 228
HpyCH4IV ACGT 2 cut(s) 321, 905
HpyCH4V TGCA 4 cut(s) 339, 374, 640, 866
HpyF3I CTNAG 6 cut(s) 153, 294, 777, 795, 819, 885
HpySE526I ACGT 2 cut(s) 321, 905
Hsp92II CATG 5 cut(s) 618, 628, 649, 837, 845
Kzo9I GATC 3 cut(s) 183, 250, 690
LweI GCATC 2 cut(s) 523, 778
MaeI CTAG 1 cut(s) 582
MaeII ACGT 2 cut(s) 321, 905
MaeIII GTNAC 2 cut(s) 389, 922
MalI GATC 3 cut(s) 185, 252, 692
MboI GATC 3 cut(s) 183, 250, 690
MhlI GDGCHC 2 cut(s) 130, 179
MluCI AATT 5 cut(s) 89, 216, 412, 811, 947
MlyI GAGTC 3 cut(s) 557, 692, 877
MmeI TCCRAC 1 cut(s) 702
MnlI CCTC 5 cut(s) 74, 178, 214, 353, 727
MroXI GAANNNNTTC 2 cut(s) 785, 914
MseI TTAA 3 cut(s) 92, 281, 964
MspI CCGG 4 cut(s) 22, 302, 467, 854
MspR9I CCNGG 1 cut(s) 419
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 419
NdeII GATC 3 cut(s) 183, 250, 690
NlaIII CATG 5 cut(s) 618, 628, 649, 837, 845
NlaIV GGNNCC 2 cut(s) 630, 730
NmuCI GTSAC 1 cut(s) 922
NspI RCATGY 2 cut(s) 649, 837
PagI TCATGA 1 cut(s) 841
PciI ACATGT 2 cut(s) 645, 833
PctI GAATGC 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 785, 914
PfeI GAWTC 3 cut(s) 298, 715, 898
PleI GAGTC 3 cut(s) 557, 692, 877
PpsI GAGTC 3 cut(s) 557, 692, 877
PscI ACATGT 2 cut(s) 645, 833
Psp6I CCWGG 1 cut(s) 417
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 630, 730
PspPI GGNCC 2 cut(s) 628, 728
RsaI GTAC 6 cut(s) 225, 366, 596, 662, 809, 838
RsaNI GTAC 6 cut(s) 224, 365, 595, 661, 808, 837
SalI GTCGAC 1 cut(s) 560
SaqAI TTAA 3 cut(s) 92, 281, 964
Sau3AI GATC 3 cut(s) 183, 250, 690
Sau96I GGNCC 2 cut(s) 628, 728
SchI GAGTC 3 cut(s) 557, 692, 877
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 2 cut(s) 130, 179
SfaNI GCATC 2 cut(s) 523, 778
SinI GGWCC 1 cut(s) 628
SmlI CTYRAG 1 cut(s) 935
SmoI CTYRAG 1 cut(s) 935
Sse9I AATT 5 cut(s) 89, 216, 412, 811, 947
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 30, 228
TaiI ACGT 2 cut(s) 324, 908
TaqI TCGA 3 cut(s) 173, 186, 561
TasI AATT 5 cut(s) 89, 216, 412, 811, 947
TatI WGTACW 4 cut(s) 223, 594, 807, 836
TfiI GAWTC 3 cut(s) 298, 715, 898
Tru1I TTAA 3 cut(s) 92, 281, 964
Tru9I TTAA 3 cut(s) 92, 281, 964
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 1 cut(s) 922
Tsp45I GTSAC 1 cut(s) 922
TspDTI ATGAA 7 cut(s) 17, 22, 43, 228, 443, 533, 860
TspRI CASTG 1 cut(s) 931
VpaK11BI GGWCC 1 cut(s) 628
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 1 cut(s) 216
XceI RCATGY 2 cut(s) 649, 837
XcmI CCANNNNNNNNNTGG 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 561
XmnI GAANNNNTTC 2 cut(s) 785, 914
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.