Rw0G015100

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00685
OG0013382
Physical Location & Seq
Reverse (-)
1400 .. 2352
953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015100.1

Sequence Viewer

Length: 924 bp
ATGAAGACTTCAAGGCCAGACCGGCGACGGTTCATCATTTCTTCTTTCTTCTTCATTTGTTTCCTCTGTGCCTTGGCTTCTATAAACGAAGTACGATTCGGTAGTCTTCTGAACTTTGGTCGCTGTGCTCTTACAAAAACCAACTCTCCTTCTCAGATATATAATTCCTCAAGCACCTTGATCGAAACCCAGAAGACTTCATCTGAGGATGAAATTCGTGTACTTTTTGGCATTCTAACCCTTCCAGACCAATACCAACGACGACACTTCCTGCGTTTAATCTATGGCACTCAGAATCCCGTGGGGGCAAAAGTGGACGTGAAGTTTGTGTTCTGCAACCTCACAAAGGAAGACCAGAAGGTACTCGTTGCACTAGAAATAATGCGCTATGATGACATTATCATTCTCGATTGCAAGGAGAATATGAACAAGGGTAAGACTTACACCTACTTTTCAAGCCTGCCGGAGATTTTCAACGATACAGATGGGTCCGATGATGATGCTTACTTTCGGCTTCAAAGCTCTTTGAAGCCTTTGCCTAGAGAAGACTTGTACTATGGTTATGTGATTCCATGCCCAAGCATGGACCCTTTTGTGCATTACATGTCTGGAATGGGGTATTTGATTTCTTGGGATATAGTTGAGTGGATCAGAGACTCAGATATCCCCAAGAACCAATTAGAAGGCCCCGAGGACAAAATTTTTGGTGAGTGGATTAGAAATGGGCATCGAGCTAAGAATAGGTTCAACGCTAAGTGGAGTATGTACAATTTTCCAGAGCCACCTACAAGATGTACTCATGAGCTTTGGCCAGATACGATTGCAGTTCATTTGTTGAAGACTCAGGAAAAGTGGATTCGGACATTGAAATACTTCAATGTCACTGATAATCTCAAGCCATCCAAATTGTATCATATACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

307

Amino Acids

35.96

Weight (kDa)

8.07

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57500
fragaria_vesca FvH4_4g09410
malus_domestica MD13G1256400.v1.1
prunus_persica Prupe.1G086900_v2.0.a1 Prupe.1G087000_v2.0.a1
pyrus_communis pycom13g22010
rosa_chinensis RchiOBHm_Chr4g0402651
rosa_laevigata RLG00000009054
rosa_multiflora Rmu_sc0009850.1_g000009 Rmu_sc0013411.1_g000002
rosa_roxburghii Rroxscaffold_5G00347400
rosa_rugosa Rorug04G0037400
rosa_samantha Rh4AG115000 Rh4BG107600 Rh4CG121900 Rh4DG107400
rosa_wichuraiana Rw0G015100 Rw4G009170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 656
AcoI YGGCCR 1 cut(s) 809
AcsI RAATTY 2 cut(s) 213, 699
AfaI GTAC 6 cut(s) 93, 222, 363, 554, 767, 796
AfiI CCNNNNNNNGG 2 cut(s) 346, 583
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 9 cut(s) 12, 456, 475, 518, 529, 748, 838, 868, 877
AjiI CACGTC 1 cut(s) 319
AluBI AGCT 3 cut(s) 522, 734, 805
AluI AGCT 3 cut(s) 522, 734, 805
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 648
AlwI GGATC 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 3 cut(s) 14, 685, 809
ApoI RAATTY 2 cut(s) 213, 699
ArsI GACNNNNNNTTYG 4 cut(s) 308, 340, 686, 718
Asp700I GAANNNNTTC 2 cut(s) 743, 872
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 3 cut(s) 489, 586, 686
AsuHPI GGTGA 1 cut(s) 719
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 2 cut(s) 489, 586
BalI TGGCCA 1 cut(s) 811
BbsI GAAGAC 6 cut(s) 11, 98, 200, 357, 552, 845
Bbv12I GWGCWC 1 cut(s) 130
BccI CCATC 2 cut(s) 479, 907
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 482, 516
BcoDI GTCTC 1 cut(s) 648
BfaI CTAG 2 cut(s) 374, 540
BglI GCCNNNNNGGC 1 cut(s) 22
Bme18I GGWCC 2 cut(s) 489, 586
BmeT110I CYCGRG 1 cut(s) 689
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 3 cut(s) 489, 586, 686
BmiI GGNNCC 3 cut(s) 490, 588, 688
BmsI GCATC 2 cut(s) 490, 736
BpiI GAAGAC 6 cut(s) 11, 98, 200, 357, 552, 845
BpuEI CTTGAG 2 cut(s) 154, 878
BsaJI CCNNGG 3 cut(s) 72, 300, 690
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 583
Bse118I RCCGGY 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 72, 300, 690
BseGI GGATG 2 cut(s) 214, 899
BseLI CCNNNNNNNGG 2 cut(s) 346, 583
BseMII CTCAG 5 cut(s) 167, 195, 305, 672, 857
BshFI GGCC 3 cut(s) 16, 687, 811
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 2 cut(s) 22, 464
BslI CCNNNNNNNGG 2 cut(s) 346, 583
BsmAI GTCTC 1 cut(s) 648
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 3 cut(s) 16, 687, 811
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 2 cut(s) 180, 648
BspANI GGCC 3 cut(s) 16, 687, 811
BspCNI CTCAG 5 cut(s) 166, 196, 304, 671, 856
BspHI TCATGA 1 cut(s) 799
BspLI GGNNCC 3 cut(s) 490, 588, 688
BspPI GGATC 1 cut(s) 656
BsrFI RCCGGY 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 765
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 3 cut(s) 72, 300, 690
BssMI GATC 2 cut(s) 180, 648
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 765
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 8 cut(s) 153, 204, 291, 658, 735, 753, 843, 921
BstDSI CCRYGG 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 214, 899
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 2 cut(s) 183, 651
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 2 cut(s) 180, 648
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 607
BstV2I GAAGAC 6 cut(s) 11, 98, 200, 357, 552, 845
BsuRI GGCC 3 cut(s) 16, 687, 811
BtgI CCRYGG 1 cut(s) 300
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 214, 899
BtsIMutI CAGTG 1 cut(s) 882
Cac8I GCNNGC 1 cut(s) 461
CciI TCATGA 1 cut(s) 799
CfoI GCGC 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 3 cut(s) 489, 586, 686
Csp6I GTAC 6 cut(s) 92, 221, 362, 553, 766, 795
CviAII CATG 4 cut(s) 573, 583, 604, 800
CviQI GTAC 6 cut(s) 92, 221, 362, 553, 766, 795
DdeI CTNAG 8 cut(s) 153, 204, 291, 658, 735, 753, 843, 921
DpnI GATC 2 cut(s) 182, 650
DpnII GATC 2 cut(s) 180, 648
EaeI YGGCCR 1 cut(s) 809
Eco130I CCWWGG 1 cut(s) 72
Eco32I GATATC 1 cut(s) 664
Eco47I GGWCC 2 cut(s) 489, 586
Eco88I CYCGRG 1 cut(s) 689
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 686
EcoRV GATATC 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 4 cut(s) 576, 586, 607, 803
FatI CATG 4 cut(s) 572, 582, 603, 799
FokI GGATG 2 cut(s) 221, 886
FspBI CTAG 2 cut(s) 374, 540
GlaI GCGC 1 cut(s) 386
HaeIII GGCC 3 cut(s) 16, 687, 811
HapII CCGG 2 cut(s) 22, 464
HhaI GCGC 1 cut(s) 387
Hin1II CATG 4 cut(s) 576, 586, 607, 803
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HinfI GANTC 6 cut(s) 96, 295, 568, 656, 841, 856
HpaII CCGG 2 cut(s) 22, 464
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 2 cut(s) 221, 316
Hpy188I TCNGA 8 cut(s) 111, 156, 205, 294, 493, 653, 661, 861
Hpy188III TCNNGA 6 cut(s) 245, 407, 609, 776, 800, 845
Hpy8I GTNNAC 2 cut(s) 221, 316
Hpy99I CGWCG 2 cut(s) 30, 264
HpyAV CCTTC 4 cut(s) 159, 251, 352, 677
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 5 cut(s) 336, 371, 414, 598, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 8 cut(s) 153, 204, 291, 658, 735, 753, 843, 921
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 4 cut(s) 576, 586, 607, 803
HspAI GCGC 1 cut(s) 385
Kzo9I GATC 2 cut(s) 180, 648
LweI GCATC 2 cut(s) 490, 736
MaeI CTAG 2 cut(s) 374, 540
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 880
MalI GATC 2 cut(s) 182, 650
MboI GATC 2 cut(s) 180, 648
MboII GAAGA 9 cut(s) 16, 33, 40, 43, 98, 205, 362, 557, 850
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 811
MluCI AATT 6 cut(s) 163, 213, 677, 699, 769, 905
MluNI TGGCCA 1 cut(s) 811
MlyI GAGTC 2 cut(s) 650, 835
MnlI CCTC 5 cut(s) 74, 178, 199, 350, 685
Mox20I TGGCCA 1 cut(s) 811
MroXI GAANNNNTTC 2 cut(s) 743, 872
MscI TGGCCA 1 cut(s) 811
MseI TTAA 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 811
MspI CCGG 2 cut(s) 22, 464
Mva1269I GAATGC 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 2 cut(s) 180, 648
NlaIII CATG 4 cut(s) 576, 586, 607, 803
NlaIV GGNNCC 3 cut(s) 490, 588, 688
NmuCI GTSAC 1 cut(s) 880
NspI RCATGY 1 cut(s) 607
PagI TCATGA 1 cut(s) 799
PciI ACATGT 1 cut(s) 603
PctI GAATGC 1 cut(s) 231
PdmI GAANNNNTTC 2 cut(s) 743, 872
PfeI GAWTC 4 cut(s) 96, 295, 568, 856
PleI GAGTC 2 cut(s) 650, 835
PpsI GAGTC 2 cut(s) 650, 835
PscI ACATGT 1 cut(s) 603
PspN4I GGNNCC 3 cut(s) 490, 588, 688
PspPI GGNCC 3 cut(s) 489, 586, 686
RsaI GTAC 6 cut(s) 93, 222, 363, 554, 767, 796
RsaNI GTAC 6 cut(s) 92, 221, 362, 553, 766, 795
SaqAI TTAA 1 cut(s) 278
Sau3AI GATC 2 cut(s) 180, 648
Sau96I GGNCC 3 cut(s) 489, 586, 686
SchI GAGTC 2 cut(s) 650, 835
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 2 cut(s) 490, 736
SinI GGWCC 2 cut(s) 489, 586
SmlI CTYRAG 2 cut(s) 169, 893
SmoI CTYRAG 2 cut(s) 169, 893
Sse9I AATT 6 cut(s) 163, 213, 677, 699, 769, 905
SspMI CTAG 2 cut(s) 374, 540
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 1 cut(s) 321
TaqI TCGA 3 cut(s) 183, 408, 730
TasI AATT 6 cut(s) 163, 213, 677, 699, 769, 905
TatI WGTACW 4 cut(s) 220, 552, 765, 794
TfiI GAWTC 4 cut(s) 96, 295, 568, 856
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 889
TseFI GTSAC 1 cut(s) 880
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 7 cut(s) 17, 22, 43, 189, 225, 440, 818
TspRI CASTG 1 cut(s) 889
VpaK11BI GGWCC 2 cut(s) 489, 586
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 2 cut(s) 213, 699
XceI RCATGY 1 cut(s) 607
XmnI GAANNNNTTC 2 cut(s) 743, 872
XspI CTAG 2 cut(s) 374, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.