Rh4BG107600

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013382
Physical Location & Seq
Reverse (-)
18326315 .. 18328192
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG107600.1

Sequence Viewer

Length: 966 bp
ATGAAGACTTCAAGGCCAGACCGGCGACGGTTCATCATTTCTTCTTTGTTCTTCATTTGTTTCCTCTGTGCCTTGGCTTCTATAAACGAAGTACGATTCGGTAGTCTTCTGAACTTTGGTAGCTGTGCTCTTACAAAAACCAACTCTCCTTCTCAGATATATAATTCCTCATCAAGCACCTTGATCGAAACCCAGAAGGCTTCCTCTGAGGATGAAATTCGTGTACTTTTTGGCATTCTAACCCTTCCAGACCAATACCAACGCCGACACTTCCTGCGTTTAATCTATGGCACTCAGAATCCGGTGGGGGCAAAAGTGGACGTGAAGTTTGTATTCTGCAACCTCACAAAGGAAGACCAAAAGGTACTCGTTGCATTAGAAATAATGCGCTATGATGACATTATCATTCTCGATTGCAAGGAGAATATGAACAAGGGTAAGACTTACACCTACTTTTCAAGCTTGCCGGAGATTTTCAACGATACAGATGGGGTGTATCCACCTTACCATTATGTCATGAAAGCTGATGATGATGCTTACTTTCGGCTTCAAAGCTTGGTTGACTCTTTGAAGCCTTTGCCTAGAGAAGACTTGTACTATGGTTATGTAATTCCATGTCCAAGCATGGACCCTTTTGTGCATTACATGTCTGGAATGGGGTATTTGATTTCTTGGGATATAGTTGAGTGGATCAGAGACTCAGATATCCCCAAGAACCAATTAGAAGGACCCGAGGACAAAATTTTTGGTGAGTGGATTAGAAATGGGCATCGAGCTAAGAATAGGTTCAACGCTAAGTGGAGTATGTACAATTTTCCTGAGCCACCTACAAGATGTACTCATGAGCTTTGGCCAGATACGATTGCAGTTCATTTGTTGAAGACTCAGGAAAAGTGGATTCGGACATTGAAATACTTCAATGTCACTGATAATCTCAAGCCATCCAAATTGTATCATATACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

321

Amino Acids

37.5

Weight (kDa)

7.58

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 88 - 204 8.1e-08 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57500
fragaria_vesca FvH4_4g09410
malus_domestica MD13G1256400.v1.1
prunus_persica Prupe.1G086900_v2.0.a1 Prupe.1G087000_v2.0.a1
pyrus_communis pycom13g22010
rosa_chinensis RchiOBHm_Chr4g0402651
rosa_laevigata RLG00000009054
rosa_multiflora Rmu_sc0009850.1_g000009 Rmu_sc0013411.1_g000002
rosa_roxburghii Rroxscaffold_5G00347400
rosa_rugosa Rorug04G0037400
rosa_samantha Rh4AG115000 Rh4BG107600 Rh4CG121900 Rh4DG107400
rosa_wichuraiana Rw0G015100 Rw4G009170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 1 cut(s) 851
AcsI RAATTY 2 cut(s) 216, 741
AfaI GTAC 6 cut(s) 93, 225, 366, 596, 809, 838
AfiI CCNNNNNNNGG 1 cut(s) 349
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 9 cut(s) 12, 459, 478, 551, 571, 790, 880, 910, 919
AjiI CACGTC 1 cut(s) 322
AluBI AGCT 6 cut(s) 123, 462, 524, 555, 776, 847
AluI AGCT 6 cut(s) 123, 462, 524, 555, 776, 847
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 731
AoxI GGCC 2 cut(s) 14, 851
ApoI RAATTY 2 cut(s) 216, 741
ArsI GACNNNNNNTTYG 4 cut(s) 311, 343, 728, 760
Asp700I GAANNNNTTC 2 cut(s) 785, 914
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 628, 728
AsuHPI GGTGA 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 2 cut(s) 628, 728
BalI TGGCCA 1 cut(s) 853
BbsI GAAGAC 5 cut(s) 11, 98, 360, 594, 887
Bbv12I GWGCWC 1 cut(s) 130
BccI CCATC 2 cut(s) 482, 949
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciVI GTATCC 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 690
BfaI CTAG 1 cut(s) 582
BfuI GTATCC 1 cut(s) 507
BglI GCCNNNNNGGC 1 cut(s) 22
Bme18I GGWCC 2 cut(s) 628, 728
BmeT110I CYCGRG 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 628, 728
BmiI GGNNCC 2 cut(s) 630, 730
BmsI GCATC 2 cut(s) 523, 778
BpiI GAAGAC 5 cut(s) 11, 98, 360, 594, 887
Bpu10I CCTNAGC 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 920
BsaJI CCNNGG 2 cut(s) 72, 732
BsaWI WCCGGW 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 72, 732
BseGI GGATG 2 cut(s) 217, 941
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 6 cut(s) 167, 198, 308, 714, 810, 899
BshFI GGCC 2 cut(s) 16, 853
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 3 cut(s) 22, 302, 467
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 690
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 2 cut(s) 16, 853
BsoBI CYCGRG 1 cut(s) 731
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 2 cut(s) 183, 690
BspANI GGCC 2 cut(s) 16, 853
BspCNI CTCAG 6 cut(s) 166, 199, 307, 713, 811, 898
BspHI TCATGA 2 cut(s) 516, 841
BspLI GGNNCC 2 cut(s) 630, 730
BspPI GGATC 1 cut(s) 698
BsrFI RCCGGY 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 807
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 72, 732
BssMI GATC 2 cut(s) 183, 690
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 807
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 9 cut(s) 153, 207, 294, 700, 777, 795, 819, 885, 963
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 2 cut(s) 217, 941
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 2 cut(s) 186, 693
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 2 cut(s) 183, 690
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 649
BstV2I GAAGAC 5 cut(s) 11, 98, 360, 594, 887
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 2 cut(s) 16, 853
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 217, 941
BtsIMutI CAGTG 1 cut(s) 924
Cac8I GCNNGC 1 cut(s) 464
CciI TCATGA 2 cut(s) 516, 841
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 628, 728
Csp6I GTAC 6 cut(s) 92, 224, 365, 595, 808, 837
CviAII CATG 5 cut(s) 517, 615, 625, 646, 842
CviQI GTAC 6 cut(s) 92, 224, 365, 595, 808, 837
DdeI CTNAG 9 cut(s) 153, 207, 294, 700, 777, 795, 819, 885, 963
DpnI GATC 2 cut(s) 185, 692
DpnII GATC 2 cut(s) 183, 690
EaeI YGGCCR 1 cut(s) 851
Eco130I CCWWGG 1 cut(s) 72
Eco32I GATATC 1 cut(s) 706
Eco47I GGWCC 2 cut(s) 628, 728
Eco88I CYCGRG 1 cut(s) 731
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 728
EcoRV GATATC 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 5 cut(s) 520, 618, 628, 649, 845
FatI CATG 5 cut(s) 516, 614, 624, 645, 841
FokI GGATG 2 cut(s) 224, 928
FspBI CTAG 1 cut(s) 582
GlaI GCGC 1 cut(s) 389
HaeIII GGCC 2 cut(s) 16, 853
HapII CCGG 3 cut(s) 22, 302, 467
HhaI GCGC 1 cut(s) 390
Hin1II CATG 5 cut(s) 520, 618, 628, 649, 845
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 2 cut(s) 460, 553
HinfI GANTC 6 cut(s) 96, 298, 563, 698, 883, 898
HpaII CCGG 3 cut(s) 22, 302, 467
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 3 cut(s) 224, 319, 562
Hpy188I TCNGA 7 cut(s) 111, 156, 208, 297, 695, 703, 903
Hpy188III TCNNGA 7 cut(s) 248, 410, 517, 651, 818, 842, 887
Hpy8I GTNNAC 3 cut(s) 224, 319, 562
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 4 cut(s) 159, 190, 254, 719
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 5 cut(s) 339, 374, 417, 640, 866
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 9 cut(s) 153, 207, 294, 700, 777, 795, 819, 885, 963
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 5 cut(s) 520, 618, 628, 649, 845
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 183, 690
LweI GCATC 2 cut(s) 523, 778
MaeI CTAG 1 cut(s) 582
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 922
MalI GATC 2 cut(s) 185, 692
MboI GATC 2 cut(s) 183, 690
MboII GAAGA 7 cut(s) 16, 33, 43, 98, 365, 599, 892
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 853
MluCI AATT 7 cut(s) 163, 216, 609, 719, 741, 811, 947
MluNI TGGCCA 1 cut(s) 853
MlyI GAGTC 3 cut(s) 557, 692, 877
MnlI CCTC 6 cut(s) 74, 178, 202, 214, 353, 727
Mox20I TGGCCA 1 cut(s) 853
MroXI GAANNNNTTC 2 cut(s) 785, 914
MscI TGGCCA 1 cut(s) 853
MseI TTAA 1 cut(s) 281
Msp20I TGGCCA 1 cut(s) 853
MspI CCGG 3 cut(s) 22, 302, 467
Mva1269I GAATGC 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 2 cut(s) 183, 690
NlaIII CATG 5 cut(s) 520, 618, 628, 649, 845
NlaIV GGNNCC 2 cut(s) 630, 730
NmuCI GTSAC 1 cut(s) 922
NspI RCATGY 1 cut(s) 649
PagI TCATGA 2 cut(s) 516, 841
PciI ACATGT 1 cut(s) 645
PctI GAATGC 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 785, 914
PfeI GAWTC 3 cut(s) 96, 298, 898
PleI GAGTC 3 cut(s) 557, 692, 877
PpsI GAGTC 3 cut(s) 557, 692, 877
PpuMI RGGWCCY 1 cut(s) 728
PscI ACATGT 1 cut(s) 645
Psp5II RGGWCCY 1 cut(s) 728
PspN4I GGNNCC 2 cut(s) 630, 730
PspPI GGNCC 2 cut(s) 628, 728
PspPPI RGGWCCY 1 cut(s) 728
RsaI GTAC 6 cut(s) 93, 225, 366, 596, 809, 838
RsaNI GTAC 6 cut(s) 92, 224, 365, 595, 808, 837
SaqAI TTAA 1 cut(s) 281
Sau3AI GATC 2 cut(s) 183, 690
Sau96I GGNCC 2 cut(s) 628, 728
SchI GAGTC 3 cut(s) 557, 692, 877
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 2 cut(s) 523, 778
SinI GGWCC 2 cut(s) 628, 728
SmlI CTYRAG 1 cut(s) 935
SmoI CTYRAG 1 cut(s) 935
Sse9I AATT 7 cut(s) 163, 216, 609, 719, 741, 811, 947
SspMI CTAG 1 cut(s) 582
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 1 cut(s) 324
TaqI TCGA 3 cut(s) 186, 411, 772
TasI AATT 7 cut(s) 163, 216, 609, 719, 741, 811, 947
TatI WGTACW 4 cut(s) 223, 594, 807, 836
TfiI GAWTC 3 cut(s) 96, 298, 898
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 1 cut(s) 922
Tsp45I GTSAC 1 cut(s) 922
TspDTI ATGAA 7 cut(s) 17, 22, 43, 228, 443, 533, 860
TspRI CASTG 1 cut(s) 931
VpaK11BI GGWCC 2 cut(s) 628, 728
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 2 cut(s) 216, 741
XceI RCATGY 1 cut(s) 649
XmnI GAANNNNTTC 2 cut(s) 785, 914
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.