Prupe.1G087000_v2.0.a1

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013382
Physical Location & Seq
Reverse (-)
6485797 .. 6486759
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G087000.1

Sequence Viewer

Length: 963 bp
ATGAAGGCGACGAGGGCAGAACGGGGTCGTTTCATAATTTCTTCTTTCGTCTTCATCTGTTTCTTGTGTGCCTTGGCTTCTATAAACGAAGTACGGTATGAAAGTCTTCTGAAATTTGGCCGATGTGCTCTTGCCAACATGAACATGCCCTCTAAGCTCAATGCTTCAGCATCAAATACTTTGCTTGCGCAGAGCTCTTCCTCCGATGATGAAATTCGTATACTTTTCGGCATTCTAACGCTTCCTGACCAATACCAGCGCCGCCACTTCCTGCGTTTAATCTACGGCACGCAGACTCCGGTGGGGGCGAAAGTGGACGTGAAATTTGTGTTCTGCAACCTCACAAAGGAAGACCAGAAAGTACTTGTTGCATTAGAAATAATGCGTTACGATGATATTATCATTCTGGATTGCCAAGAGAATATGAACAAGGGTAAGACTTACACCTACTTTTCGAGCTTGCCCGAGATGTTCAACGACACAGAGGGGCCTAATCCGCCCTACCATTATGTGATGAAAACCGATGACGATGCTTATTTTAGGCTGCAGAGCTTGGTGGACTCTTTGAAGCCGTTGCCTAGAGAAGACTTGTACTATGGTTATGTTATCCCATGCCCAAGTATGGACCCTTTTGTGCATTACATGTCTGGCATGGGGTATTTGATTTCTTGGGACATAGTGGAGTGGATCAGAGAGTCTGATATCCCTAAGAACCATTTGGAAGGGCCGGAGGATAAAATTTTCGGGTATTGGATGCGAGACGGGCATCGTGCTAAGAACAGATTCAATGCTAAGTGGTCTATGTACAACTTTCCTGAGCCTCCGACAAGATGTACACATGAGCTTTGGCCGGACACAATTGCAGTTCATTTGTTGAAGAATCAAGAGAAGTGGATTAGAACATTGAAGTATTTCAATGTCACTGATAATCTCAAGCCTTCCAAATTGTACCACATACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

321

Amino Acids

37.39

Weight (kDa)

7.07

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57500
fragaria_vesca FvH4_4g09410
malus_domestica MD13G1256400.v1.1
prunus_persica Prupe.1G086900_v2.0.a1 Prupe.1G087000_v2.0.a1
pyrus_communis pycom13g22010
rosa_chinensis RchiOBHm_Chr4g0402651
rosa_laevigata RLG00000009054
rosa_multiflora Rmu_sc0009850.1_g000009 Rmu_sc0013411.1_g000002
rosa_roxburghii Rroxscaffold_5G00347400
rosa_rugosa Rorug04G0037400
rosa_samantha Rh4AG115000 Rh4BG107600 Rh4CG121900 Rh4DG107400
rosa_wichuraiana Rw0G015100 Rw4G009170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 189
AccI GTMKAC 1 cut(s) 220
AciI CCGC 2 cut(s) 262, 497
AclWI GGATC 1 cut(s) 695
AcoI YGGCCR 2 cut(s) 118, 848
AcsI RAATTY 4 cut(s) 113, 213, 323, 738
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 6 cut(s) 93, 363, 593, 806, 835, 950
AfiI CCNNNNNNNGG 2 cut(s) 346, 622
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 6 cut(s) 475, 568, 787, 877, 907, 916
AjiI CACGTC 1 cut(s) 319
AluBI AGCT 5 cut(s) 157, 195, 459, 552, 844
AluI AGCT 5 cut(s) 157, 195, 459, 552, 844
Alw21I GWGCWC 2 cut(s) 130, 197
Alw26I GTCTC 1 cut(s) 753
AlwI GGATC 1 cut(s) 695
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 4 cut(s) 118, 488, 725, 848
ApeKI GCWGC 1 cut(s) 544
ApoI RAATTY 4 cut(s) 113, 213, 323, 738
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
Asp700I GAANNNNTTC 3 cut(s) 105, 782, 911
AspLEI GCGC 2 cut(s) 190, 261
AspS9I GGNCC 3 cut(s) 488, 625, 725
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 197
BbsI GAAGAC 4 cut(s) 43, 98, 357, 591
Bbv12I GWGCWC 2 cut(s) 130, 197
BbvI GCAGC 1 cut(s) 531
BceAI ACGGC 2 cut(s) 301, 556
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BcoDI GTCTC 1 cut(s) 753
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 545
BfoI RGCGCY 1 cut(s) 262
BisI GCNGC 2 cut(s) 262, 545
BlsI GCNGC 2 cut(s) 263, 546
BmcAI AGTACT 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 625
BmeT110I CYCGRG 1 cut(s) 464
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 3 cut(s) 488, 625, 725
BmiI GGNNCC 2 cut(s) 489, 627
BmsI GCATC 4 cut(s) 179, 520, 744, 775
BpiI GAAGAC 4 cut(s) 43, 98, 357, 591
Bpu10I CCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 917
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 622
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 759
BseLI CCNNNNNNNGG 2 cut(s) 346, 622
BseMII CTCAG 1 cut(s) 807
BseXI GCAGC 1 cut(s) 531
BshFI GGCC 4 cut(s) 120, 490, 727, 850
BsiHKAI GWGCWC 2 cut(s) 130, 197
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 3 cut(s) 299, 728, 851
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 2 cut(s) 346, 622
BsmAI GTCTC 1 cut(s) 753
BsmBI CGTCTC 1 cut(s) 753
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 4 cut(s) 120, 490, 727, 850
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 130, 197
Bsp1407I TGTACA 2 cut(s) 804, 833
Bsp143I GATC 1 cut(s) 687
BspACI CCGC 2 cut(s) 262, 497
BspANI GGCC 4 cut(s) 120, 490, 727, 850
BspCNI CTCAG 1 cut(s) 808
BspLI GGNNCC 2 cut(s) 489, 627
BspMAI CTGCAG 1 cut(s) 549
BspPI GGATC 1 cut(s) 695
BspQI GCTCTTC 1 cut(s) 202
BsrGI TGTACA 2 cut(s) 804, 833
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 687
BssNAI GTATAC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 72
Bst1107I GTATAC 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 202
BstAUI TGTACA 2 cut(s) 804, 833
BstC8I GCNNGC 3 cut(s) 186, 290, 461
BstDEI CTNAG 5 cut(s) 153, 708, 774, 792, 816
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 759
BstH2I RGCGCY 1 cut(s) 262
BstHHI GCGC 2 cut(s) 190, 261
BstKTI GATC 1 cut(s) 690
BstMAI GTCTC 1 cut(s) 753
BstMBI GATC 1 cut(s) 687
BstMWI GCNNNNNNNGC 4 cut(s) 14, 154, 496, 763
BstNSI RCATGY 2 cut(s) 148, 646
BstSFI CTRYAG 1 cut(s) 545
BstV1I GCAGC 1 cut(s) 531
BstV2I GAAGAC 4 cut(s) 43, 98, 357, 591
BstZ17I GTATAC 1 cut(s) 221
BsuRI GGCC 4 cut(s) 120, 490, 727, 850
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 1 cut(s) 759
BtsIMutI CAGTG 1 cut(s) 921
Cac8I GCNNGC 3 cut(s) 186, 290, 461
CfoI GCGC 2 cut(s) 190, 261
Cfr13I GGNCC 3 cut(s) 488, 625, 725
Csp6I GTAC 6 cut(s) 92, 362, 592, 805, 834, 949
CspCI CAANNNNNGTGG 2 cut(s) 872, 907
CviAII CATG 6 cut(s) 139, 145, 612, 643, 652, 839
CviQI GTAC 6 cut(s) 92, 362, 592, 805, 834, 949
DdeI CTNAG 5 cut(s) 153, 708, 774, 792, 816
DpnI GATC 1 cut(s) 689
DpnII GATC 1 cut(s) 687
EaeI YGGCCR 2 cut(s) 118, 848
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
EciI GGCGGA 1 cut(s) 486
Ecl136II GAGCTC 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 197
Eco32I GATATC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 488
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 753
FaeI CATG 6 cut(s) 142, 148, 615, 646, 655, 842
FaqI GGGAC 1 cut(s) 686
FatI CATG 6 cut(s) 138, 144, 611, 642, 651, 838
FblI GTMKAC 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 262, 545
FokI GGATG 1 cut(s) 766
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 262, 545
FspBI CTAG 1 cut(s) 579
FspI TGCGCA 1 cut(s) 189
GlaI GCGC 2 cut(s) 189, 260
GluI GCNGC 2 cut(s) 262, 545
HaeII RGCGCY 1 cut(s) 262
HaeIII GGCC 4 cut(s) 120, 490, 727, 850
HapII CCGG 3 cut(s) 299, 728, 851
HhaI GCGC 2 cut(s) 190, 261
Hin1II CATG 6 cut(s) 142, 148, 615, 646, 655, 842
Hin6I GCGC 2 cut(s) 188, 259
HinP1I GCGC 2 cut(s) 188, 259
HinfI GANTC 5 cut(s) 295, 560, 695, 783, 880
HpaII CCGG 3 cut(s) 299, 728, 851
Hpy166II GTNNAC 4 cut(s) 221, 316, 559, 836
Hpy188I TCNGA 5 cut(s) 111, 205, 692, 700, 825
Hpy188III TCNNGA 4 cut(s) 245, 407, 815, 884
Hpy8I GTNNAC 4 cut(s) 221, 316, 559, 836
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 716, 948
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 5 cut(s) 336, 371, 547, 637, 863
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 154, 496, 763
HpyF3I CTNAG 5 cut(s) 153, 708, 774, 792, 816
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 6 cut(s) 142, 148, 615, 646, 655, 842
HspAI GCGC 2 cut(s) 188, 259
Kzo9I GATC 1 cut(s) 687
LguI GCTCTTC 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 531
LweI GCATC 4 cut(s) 179, 520, 744, 775
MaeI CTAG 1 cut(s) 579
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 386, 919
MalI GATC 1 cut(s) 689
MboI GATC 1 cut(s) 687
MboII GAAGA 7 cut(s) 33, 43, 98, 189, 362, 596, 889
MfeI CAATTG 1 cut(s) 858
MhlI GDGCHC 2 cut(s) 130, 197
MluCI AATT 7 cut(s) 36, 113, 213, 323, 738, 858, 944
MlyI GAGTC 3 cut(s) 289, 554, 704
MmeI TCCRAC 1 cut(s) 848
MnlI CCTC 7 cut(s) 6, 160, 211, 350, 478, 724, 831
MroXI GAANNNNTTC 3 cut(s) 105, 782, 911
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 3 cut(s) 299, 728, 851
MunI CAATTG 1 cut(s) 858
Mva1269I GAATGC 1 cut(s) 231
MwoI GCNNNNNNNGC 4 cut(s) 14, 154, 496, 763
NdeII GATC 1 cut(s) 687
NlaIII CATG 6 cut(s) 142, 148, 615, 646, 655, 842
NlaIV GGNNCC 2 cut(s) 489, 627
NmuCI GTSAC 1 cut(s) 919
NsbI TGCGCA 1 cut(s) 189
NspI RCATGY 2 cut(s) 148, 646
PciI ACATGT 1 cut(s) 642
PciSI GCTCTTC 1 cut(s) 202
PctI GAATGC 1 cut(s) 231
PdmI GAANNNNTTC 3 cut(s) 105, 782, 911
PfeI GAWTC 2 cut(s) 783, 880
PkrI GCNGC 2 cut(s) 263, 546
PleI GAGTC 3 cut(s) 289, 554, 703
PpsI GAGTC 3 cut(s) 289, 554, 703
PscI ACATGT 1 cut(s) 642
Psp124BI GAGCTC 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 489, 627
PspPI GGNCC 3 cut(s) 488, 625, 725
PstI CTGCAG 1 cut(s) 549
RsaI GTAC 6 cut(s) 93, 363, 593, 806, 835, 950
RsaNI GTAC 6 cut(s) 92, 362, 592, 805, 834, 949
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 2 cut(s) 262, 545
Sau3AI GATC 1 cut(s) 687
Sau96I GGNCC 3 cut(s) 488, 625, 725
ScaI AGTACT 1 cut(s) 363
SchI GAGTC 3 cut(s) 289, 554, 704
SduI GDGCHC 2 cut(s) 130, 197
SetI ASST 8 cut(s) 159, 197, 321, 342, 449, 461, 554, 846
SfaNI GCATC 4 cut(s) 179, 520, 744, 775
SfcI CTRYAG 1 cut(s) 545
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
Sse9I AATT 7 cut(s) 36, 113, 213, 323, 738, 858, 944
SsiI CCGC 2 cut(s) 262, 497
SspMI CTAG 1 cut(s) 579
SstI GAGCTC 1 cut(s) 197
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 455
TasI AATT 7 cut(s) 36, 113, 213, 323, 738, 858, 944
TatI WGTACW 4 cut(s) 361, 591, 804, 833
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 2 cut(s) 783, 880
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 928
TseFI GTSAC 1 cut(s) 919
TseI GCWGC 1 cut(s) 544
Tsp45I GTSAC 1 cut(s) 919
TspDTI ATGAA 9 cut(s) 17, 22, 43, 114, 155, 225, 440, 530, 857
TspRI CASTG 1 cut(s) 928
VpaK11BI GGWCC 1 cut(s) 625
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 4 cut(s) 113, 213, 323, 738
XceI RCATGY 2 cut(s) 148, 646
XmiI GTMKAC 1 cut(s) 220
XmnI GAANNNNTTC 3 cut(s) 105, 782, 911
XspI CTAG 1 cut(s) 579
ZrmI AGTACT 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.