RchiOBHm_Chr4g0402651

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013382
Physical Location & Seq
Reverse (-)
21276022 .. 21276984
963 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37443

Sequence Viewer

Length: 963 bp
ATGAAGACTTCAAGGCCAGACCGGCGACGGTTCATCATTTCTTCTTTCTTCTTCATTTGTTTCCTCTGTGCCTTGGCTTCTATAAACGAAGTACGATTCGATAGTCTTCTGAACTTTGGTCGCTGTGCTCTTACAAAAACCAACTCTCCTTCTCAGATATATAATTCCTCAAGCACCTTGATCGAAACCCAGAAGACTTCATCTGAGGATGAAATTCGTGTACTTTTTGGCATTCTAACCCTTCCAGACCAATACCAACGACGACACTTCCTACGTTTAATCTATGGCACTCAGAATCCCGTGGGGGCAAAAGTGGACGTGAAGTTTGTGTTCTGCAACCTCACAAAGGAAGACCAGAAGGTACTCGTTGCTCTAGAAATAATGCGCTATGATGACATTATCATTCTCGATTGCAAGGAGAATATGAACAAGGGTAAGACTTACACCTACTTTTCAAGCTTGCCGGAGATTTTCAACGATACAGATGGGGTGTATCCACCTTACCATTATGTCATGAAAGCCGATGATGATGCTTACTTTCGGCTTCAAAGCTTGGTTGACTCTTTGAAGCCTTTGCCTAGAGAAGACTTATACTATGGTTATGTAATTCCATGCCCAAGCATGGACCCTTTTGTGCATTACATGTCTGGAATGGGGTATTTGATTTCTTGGGATATAGTTGAGTGGATCAGAGACTCAGATATCCCCAAGAACCAATTAGAAGGCCCCGAGGACAAAATTTTTGGTGAGTGGATTAGAAATGGGCATCAAGCTAAGAACAGGTTCAACGCTAAGTGGAGTATGTACAATTTTCCTGAGCCACCTACAAGATGTACTCATGAGCTTTGGCCAGATACGATTGCAGTTCATTTGTTGAAGACTCAGGAAAAGTGGATTCGGACATTGAAATACTTCAATGTCACTGATAATCTCAAGCCATCCAAATTGTATCATATACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

320

Amino Acids

37.58

Weight (kDa)

7.03

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 87 - 203 8e-08 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57500
fragaria_vesca FvH4_4g09410
malus_domestica MD13G1256400.v1.1
prunus_persica Prupe.1G086900_v2.0.a1 Prupe.1G087000_v2.0.a1
pyrus_communis pycom13g22010
rosa_chinensis RchiOBHm_Chr4g0402651
rosa_laevigata RLG00000009054
rosa_multiflora Rmu_sc0009850.1_g000009 Rmu_sc0013411.1_g000002
rosa_roxburghii Rroxscaffold_5G00347400
rosa_rugosa Rorug04G0037400
rosa_samantha Rh4AG115000 Rh4BG107600 Rh4CG121900 Rh4DG107400
rosa_wichuraiana Rw0G015100 Rw4G009170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 695
AcoI YGGCCR 1 cut(s) 848
AcsI RAATTY 2 cut(s) 213, 738
AfaI GTAC 5 cut(s) 93, 222, 363, 806, 835
AfiI CCNNNNNNNGG 2 cut(s) 346, 622
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 9 cut(s) 12, 456, 475, 548, 568, 787, 877, 907, 916
AjiI CACGTC 1 cut(s) 319
AluBI AGCT 4 cut(s) 459, 552, 773, 844
AluI AGCT 4 cut(s) 459, 552, 773, 844
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 687
AlwI GGATC 1 cut(s) 695
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 3 cut(s) 14, 724, 848
ApoI RAATTY 2 cut(s) 213, 738
ArsI GACNNNNNNTTYG 4 cut(s) 308, 340, 725, 757
Asp700I GAANNNNTTC 2 cut(s) 782, 911
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 2 cut(s) 625, 725
AsuHPI GGTGA 1 cut(s) 758
AvaI CYCGRG 1 cut(s) 728
AvaII GGWCC 1 cut(s) 625
BalI TGGCCA 1 cut(s) 850
BbsI GAAGAC 6 cut(s) 11, 98, 200, 357, 591, 884
Bbv12I GWGCWC 1 cut(s) 130
BccI CCATC 2 cut(s) 479, 946
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 512, 546
BciVI GTATCC 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 687
BfaI CTAG 2 cut(s) 374, 579
BfuI GTATCC 1 cut(s) 504
BglI GCCNNNNNGGC 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 625
BmeT110I CYCGRG 1 cut(s) 728
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 625, 725
BmiI GGNNCC 2 cut(s) 627, 727
BmsI GCATC 2 cut(s) 520, 775
BpiI GAAGAC 6 cut(s) 11, 98, 200, 357, 591, 884
Bpu10I CCTNAGC 1 cut(s) 816
BpuEI CTTGAG 2 cut(s) 154, 917
BsaJI CCNNGG 3 cut(s) 72, 300, 729
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 622
Bse118I RCCGGY 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 72, 300, 729
BseGI GGATG 2 cut(s) 214, 938
BseLI CCNNNNNNNGG 2 cut(s) 346, 622
BseMII CTCAG 6 cut(s) 167, 195, 305, 711, 807, 896
BshFI GGCC 3 cut(s) 16, 726, 850
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 2 cut(s) 22, 464
BslI CCNNNNNNNGG 2 cut(s) 346, 622
BsmAI GTCTC 1 cut(s) 687
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 3 cut(s) 16, 726, 850
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 804
Bsp143I GATC 2 cut(s) 180, 687
BspANI GGCC 3 cut(s) 16, 726, 850
BspCNI CTCAG 6 cut(s) 166, 196, 304, 710, 808, 895
BspHI TCATGA 2 cut(s) 513, 838
BspLI GGNNCC 2 cut(s) 627, 727
BspPI GGATC 1 cut(s) 695
BsrFI RCCGGY 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 804
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 3 cut(s) 72, 300, 729
BssMI GATC 2 cut(s) 180, 687
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 804
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 9 cut(s) 153, 204, 291, 697, 774, 792, 816, 882, 960
BstDSI CCRYGG 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 214, 938
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 2 cut(s) 183, 690
BstMAI GTCTC 1 cut(s) 687
BstMBI GATC 2 cut(s) 180, 687
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 646
BstV2I GAAGAC 6 cut(s) 11, 98, 200, 357, 591, 884
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 3 cut(s) 16, 726, 850
BtgI CCRYGG 1 cut(s) 300
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 214, 938
BtsIMutI CAGTG 1 cut(s) 921
Cac8I GCNNGC 1 cut(s) 461
CciI TCATGA 2 cut(s) 513, 838
CfoI GCGC 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 625, 725
Csp6I GTAC 5 cut(s) 92, 221, 362, 805, 834
CviAII CATG 5 cut(s) 514, 612, 622, 643, 839
CviQI GTAC 5 cut(s) 92, 221, 362, 805, 834
DdeI CTNAG 9 cut(s) 153, 204, 291, 697, 774, 792, 816, 882, 960
DpnI GATC 2 cut(s) 182, 689
DpnII GATC 2 cut(s) 180, 687
EaeI YGGCCR 1 cut(s) 848
Eco130I CCWWGG 1 cut(s) 72
Eco32I GATATC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 625
Eco88I CYCGRG 1 cut(s) 728
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 725
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 5 cut(s) 517, 615, 625, 646, 842
FatI CATG 5 cut(s) 513, 611, 621, 642, 838
FokI GGATG 2 cut(s) 221, 925
FspBI CTAG 2 cut(s) 374, 579
GlaI GCGC 1 cut(s) 386
HaeIII GGCC 3 cut(s) 16, 726, 850
HapII CCGG 2 cut(s) 22, 464
HhaI GCGC 1 cut(s) 387
Hin1II CATG 5 cut(s) 517, 615, 625, 646, 842
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 2 cut(s) 457, 550
HinfI GANTC 6 cut(s) 96, 295, 560, 695, 880, 895
HpaII CCGG 2 cut(s) 22, 464
HphI GGTGA 1 cut(s) 758
Hpy166II GTNNAC 3 cut(s) 221, 316, 559
Hpy188I TCNGA 7 cut(s) 111, 156, 205, 294, 692, 700, 900
Hpy188III TCNNGA 8 cut(s) 245, 374, 407, 514, 648, 815, 839, 884
Hpy8I GTNNAC 3 cut(s) 221, 316, 559
Hpy99I CGWCG 2 cut(s) 30, 264
HpyAV CCTTC 4 cut(s) 159, 251, 352, 716
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 2 cut(s) 274, 318
HpyCH4V TGCA 4 cut(s) 336, 414, 637, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 9 cut(s) 153, 204, 291, 697, 774, 792, 816, 882, 960
HpySE526I ACGT 2 cut(s) 274, 318
Hsp92II CATG 5 cut(s) 517, 615, 625, 646, 842
HspAI GCGC 1 cut(s) 385
Kzo9I GATC 2 cut(s) 180, 687
LweI GCATC 2 cut(s) 520, 775
MaeI CTAG 2 cut(s) 374, 579
MaeII ACGT 2 cut(s) 274, 318
MaeIII GTNAC 1 cut(s) 919
MalI GATC 2 cut(s) 182, 689
MboI GATC 2 cut(s) 180, 687
MboII GAAGA 9 cut(s) 16, 33, 40, 43, 98, 205, 362, 596, 889
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 850
MluCI AATT 7 cut(s) 163, 213, 606, 716, 738, 808, 944
MluNI TGGCCA 1 cut(s) 850
MlyI GAGTC 3 cut(s) 554, 689, 874
MnlI CCTC 5 cut(s) 74, 178, 199, 350, 724
Mox20I TGGCCA 1 cut(s) 850
MroXI GAANNNNTTC 2 cut(s) 782, 911
MscI TGGCCA 1 cut(s) 850
MseI TTAA 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 850
MspI CCGG 2 cut(s) 22, 464
Mva1269I GAATGC 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 2 cut(s) 180, 687
NlaIII CATG 5 cut(s) 517, 615, 625, 646, 842
NlaIV GGNNCC 2 cut(s) 627, 727
NmuCI GTSAC 1 cut(s) 919
NspI RCATGY 1 cut(s) 646
PagI TCATGA 2 cut(s) 513, 838
PciI ACATGT 1 cut(s) 642
PctI GAATGC 1 cut(s) 231
PdmI GAANNNNTTC 2 cut(s) 782, 911
PfeI GAWTC 3 cut(s) 96, 295, 895
PleI GAGTC 3 cut(s) 554, 689, 874
PpsI GAGTC 3 cut(s) 554, 689, 874
PscI ACATGT 1 cut(s) 642
PspN4I GGNNCC 2 cut(s) 627, 727
PspPI GGNCC 2 cut(s) 625, 725
RsaI GTAC 5 cut(s) 93, 222, 363, 806, 835
RsaNI GTAC 5 cut(s) 92, 221, 362, 805, 834
SaqAI TTAA 1 cut(s) 278
Sau3AI GATC 2 cut(s) 180, 687
Sau96I GGNCC 2 cut(s) 625, 725
SchI GAGTC 3 cut(s) 554, 689, 874
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 2 cut(s) 520, 775
SinI GGWCC 1 cut(s) 625
SmlI CTYRAG 2 cut(s) 169, 932
SmoI CTYRAG 2 cut(s) 169, 932
Sse9I AATT 7 cut(s) 163, 213, 606, 716, 738, 808, 944
SspMI CTAG 2 cut(s) 374, 579
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 2 cut(s) 277, 321
TaqI TCGA 3 cut(s) 99, 183, 408
TasI AATT 7 cut(s) 163, 213, 606, 716, 738, 808, 944
TatI WGTACW 3 cut(s) 220, 804, 833
TfiI GAWTC 3 cut(s) 96, 295, 895
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 928
TseFI GTSAC 1 cut(s) 919
Tsp45I GTSAC 1 cut(s) 919
TspDTI ATGAA 8 cut(s) 17, 22, 43, 189, 225, 440, 530, 857
TspRI CASTG 1 cut(s) 928
VpaK11BI GGWCC 1 cut(s) 625
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 2 cut(s) 213, 738
XbaI TCTAGA 1 cut(s) 373
XceI RCATGY 1 cut(s) 646
XmnI GAANNNNTTC 2 cut(s) 782, 911
XspI CTAG 2 cut(s) 374, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.