MD13G1256400.v1.1

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013382
Physical Location & Seq
Reverse (-)
28134017 .. 28134973
957 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1256400.v1.1.491

Sequence Viewer

Length: 957 bp
ATGAAGACCTCGAGGCCGGACCGGCGTGGTTTCATAATTTATTCCTTCTTCTTCATTTGTTTCCTCTGTGCCCTAGCTTCCATCAACGAGGTTCGATTTGATAGTCTTTTGAAATTCGGTCGCTGTGCTCTTTCCAACATCAACGCTCCCAATAGTACTTCAACAGCAAATGTTCTGCTCGCCCCGAACTCTTCCTCGGACGATGAGATTCGTATACTTTTCGGCATTCTAACACTTCCTGACCAATACCACCGCCGCCACTTCCTGCGTATGATCTACGGCACGCAAACTCCAGTGGGGGCATCAGTGGACGTGAAGTTTGTGTTCTGCAACCTCACAAAGGAAGACCAGAAAGTACTTGTTGCATTAGAAATAATGCGTTACGATGACATTATCATTCTCAATTGCAAAGAGAATATGAACAAGGGTAAGACTTACACCTATTTTTCGAGCTTGCCAGAGATGTTCAACGATACGAAGGGGCCAAATCGGCCTTACCATTATGTAATGAAAACAGATGATGATGCGTATTTTAGGCTGCAAAGCTTGGTGGACTCGTTGAAGCCGTTACCAAGACAAGACTTGTACTATGGTTATGTTATTCCATGCCCAAGTATGGATCCATTTGTGCATTACATGTCTGGAATGGGGTATTTGATTTCTTGGGATATAGTGGAGTGGATTAGAGAGTCCGACATCCCCAAGAACCATTTGGAAGGGCCGGAGGATAAAATTTTCGGGGATTGGATTAGAGAAGGGCATCGCGCGAAAAACAGGTACAATGCTAAGTGGTCTATGTACAATTTTCCGGAGCCGCCCACAAGATGCACACATGAGCTTTGGCCAGACACGATCGCAGTTCATTTGTTGAAGAATCAAGAAAAATGGATTACGACGTTGAAGTATTTCAATGTCACTGATAATCTCAAGCCTTCGAAATTGTACCATATACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

319

Amino Acids

37.19

Weight (kDa)

8.06

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 85 - 201 3.6e-07 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57500
fragaria_vesca FvH4_4g09410
malus_domestica MD13G1256400.v1.1
prunus_persica Prupe.1G086900_v2.0.a1 Prupe.1G087000_v2.0.a1
pyrus_communis pycom13g22010
rosa_chinensis RchiOBHm_Chr4g0402651
rosa_laevigata RLG00000009054
rosa_multiflora Rmu_sc0009850.1_g000009 Rmu_sc0013411.1_g000002
rosa_roxburghii Rroxscaffold_5G00347400
rosa_rugosa Rorug04G0037400
rosa_samantha Rh4AG115000 Rh4BG107600 Rh4CG121900 Rh4DG107400
rosa_wichuraiana Rw0G015100 Rw4G009170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 10
AccI GTMKAC 1 cut(s) 214
AccII CGCG 2 cut(s) 765, 767
AccIII TCCGGA 1 cut(s) 808
AciI CCGC 3 cut(s) 253, 256, 815
AclWI GGATC 2 cut(s) 614, 627
AcoI YGGCCR 1 cut(s) 842
AcsI RAATTY 2 cut(s) 113, 732
AfaI GTAC 6 cut(s) 157, 357, 587, 779, 800, 944
AfiI CCNNNNNNNGG 2 cut(s) 340, 616
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 7 cut(s) 112, 162, 469, 562, 871, 901, 910
AjiI CACGTC 1 cut(s) 313
AluBI AGCT 4 cut(s) 77, 453, 546, 838
AluI AGCT 4 cut(s) 77, 453, 546, 838
Alw21I GWGCWC 1 cut(s) 130
AlwI GGATC 2 cut(s) 614, 627
Ama87I CYCGRG 1 cut(s) 10
Aor13HI TCCGGA 1 cut(s) 808
AoxI GGCC 5 cut(s) 14, 482, 491, 719, 842
ApeKI GCWGC 1 cut(s) 538
ApoI RAATTY 2 cut(s) 113, 732
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
Asp700I GAANNNNTTC 1 cut(s) 905
AspLEI GCGC 1 cut(s) 767
AspS9I GGNCC 3 cut(s) 19, 482, 719
AsuII TTCGAA 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 73
BalI TGGCCA 1 cut(s) 844
BamHI GGATCC 1 cut(s) 619
BbsI GAAGAC 2 cut(s) 11, 351
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 525
BccI CCATC 1 cut(s) 89
BceAI ACGGC 2 cut(s) 295, 550
BfaI CTAG 1 cut(s) 74
BglI GCCNNNNNGGC 2 cut(s) 22, 490
BisI GCNGC 3 cut(s) 256, 539, 815
BlsI GCNGC 3 cut(s) 257, 540, 816
BmcAI AGTACT 2 cut(s) 157, 357
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 10
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 3 cut(s) 19, 482, 719
BmiI GGNNCC 3 cut(s) 483, 621, 813
BmsI GCATC 4 cut(s) 311, 514, 769, 815
BpiI GAAGAC 2 cut(s) 11, 351
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 935
BpuEI CTTGAG 1 cut(s) 911
BsaJI CCNNGG 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 808
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 616
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 293
BseAI TCCGGA 1 cut(s) 808
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 696
BseLI CCNNNNNNNGG 2 cut(s) 340, 616
BseNI ACTGG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 1 cut(s) 525
Bsh1236I CGCG 2 cut(s) 765, 767
Bsh1285I CGRYCG 2 cut(s) 121, 855
BshFI GGCC 5 cut(s) 16, 484, 493, 721, 844
BsiEI CGRYCG 2 cut(s) 121, 855
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 4 cut(s) 17, 22, 722, 809
BslI CCNNNNNNNGG 2 cut(s) 340, 616
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 5 cut(s) 16, 484, 493, 721, 844
BsoBI CYCGRG 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 935
Bsp1286I GDGCHC 2 cut(s) 73, 130
Bsp13I TCCGGA 1 cut(s) 808
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 3 cut(s) 273, 619, 852
BspACI CCGC 3 cut(s) 253, 256, 815
BspANI GGCC 5 cut(s) 16, 484, 493, 721, 844
BspEI TCCGGA 1 cut(s) 808
BspFNI CGCG 2 cut(s) 765, 767
BspLI GGNNCC 3 cut(s) 483, 621, 813
BspPI GGATC 2 cut(s) 614, 627
BspT104I TTCGAA 1 cut(s) 935
BsrFI RCCGGY 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 798
BsrI ACTGG 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 3 cut(s) 273, 619, 852
BssNAI GTATAC 1 cut(s) 215
Bst1107I GTATAC 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 196
BstAUI TGTACA 1 cut(s) 798
BstBI TTCGAA 1 cut(s) 935
BstC8I GCNNGC 3 cut(s) 180, 284, 455
BstDEI CTNAG 1 cut(s) 786
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 696
BstFNI CGCG 2 cut(s) 765, 767
BstHHI GCGC 1 cut(s) 767
BstKTI GATC 3 cut(s) 276, 622, 855
BstMBI GATC 3 cut(s) 273, 619, 852
BstMCI CGRYCG 2 cut(s) 121, 855
BstMWI GCNNNNNNNGC 2 cut(s) 22, 490
BstNSI RCATGY 1 cut(s) 640
BstSLI GKGCMC 1 cut(s) 73
BstUI CGCG 2 cut(s) 765, 767
BstV1I GCAGC 1 cut(s) 525
BstV2I GAAGAC 2 cut(s) 11, 351
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
BstZ17I GTATAC 1 cut(s) 215
BsuRI GGCC 5 cut(s) 16, 484, 493, 721, 844
BtgZI GCGATG 1 cut(s) 746
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 696
BtsIMutI CAGTG 3 cut(s) 300, 312, 915
Cac8I GCNNGC 3 cut(s) 180, 284, 455
CfoI GCGC 1 cut(s) 767
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 3 cut(s) 19, 482, 719
CpoI CGGWCCG 1 cut(s) 19
Csp6I GTAC 6 cut(s) 156, 356, 586, 778, 799, 943
CspI CGGWCCG 1 cut(s) 19
CviAII CATG 3 cut(s) 606, 637, 833
CviQI GTAC 6 cut(s) 156, 356, 586, 778, 799, 943
DdeI CTNAG 1 cut(s) 786
DpnI GATC 3 cut(s) 275, 621, 854
DpnII GATC 3 cut(s) 273, 619, 852
EaeI YGGCCR 1 cut(s) 842
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 338
FaeI CATG 3 cut(s) 609, 640, 836
FatI CATG 3 cut(s) 605, 636, 832
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 3 cut(s) 256, 539, 815
FokI GGATG 1 cut(s) 683
Fsp4HI GCNGC 3 cut(s) 256, 539, 815
FspBI CTAG 1 cut(s) 74
GlaI GCGC 1 cut(s) 766
GluI GCNGC 3 cut(s) 256, 539, 815
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 5 cut(s) 16, 484, 493, 721, 844
HapII CCGG 4 cut(s) 17, 22, 722, 809
HhaI GCGC 1 cut(s) 767
Hin1II CATG 3 cut(s) 609, 640, 836
Hin6I GCGC 1 cut(s) 765
HinP1I GCGC 1 cut(s) 765
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 4 cut(s) 208, 554, 689, 874
HpaII CCGG 4 cut(s) 17, 22, 722, 809
Hpy166II GTNNAC 3 cut(s) 215, 310, 553
Hpy188I TCNGA 2 cut(s) 199, 694
Hpy188III TCNNGA 4 cut(s) 239, 642, 809, 878
Hpy8I GTNNAC 3 cut(s) 215, 310, 553
Hpy99I CGWCG 1 cut(s) 898
HpyAV CCTTC 5 cut(s) 55, 472, 710, 749, 942
HpyCH4IV ACGT 2 cut(s) 312, 896
HpyCH4V TGCA 6 cut(s) 330, 365, 408, 541, 631, 828
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 490
HpyF3I CTNAG 1 cut(s) 786
HpySE526I ACGT 2 cut(s) 312, 896
Hsp92II CATG 3 cut(s) 609, 640, 836
HspAI GCGC 1 cut(s) 765
Kpn2I TCCGGA 1 cut(s) 808
Kzo9I GATC 3 cut(s) 273, 619, 852
LmnI GCTCC 2 cut(s) 151, 811
Lsp1109I GCAGC 1 cut(s) 525
LweI GCATC 4 cut(s) 311, 514, 769, 815
MaeI CTAG 1 cut(s) 74
MaeII ACGT 2 cut(s) 312, 896
MaeIII GTNAC 3 cut(s) 380, 567, 913
MalI GATC 3 cut(s) 275, 621, 854
MboI GATC 3 cut(s) 273, 619, 852
MboII GAAGA 6 cut(s) 16, 40, 43, 183, 356, 883
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 2 cut(s) 73, 130
MlsI TGGCCA 1 cut(s) 844
MluCI AATT 6 cut(s) 36, 113, 403, 732, 802, 938
MluNI TGGCCA 1 cut(s) 844
MlyI GAGTC 2 cut(s) 548, 698
MmeI TCCRAC 2 cut(s) 159, 717
MnlI CCTC 7 cut(s) 6, 19, 74, 82, 205, 344, 718
Mox20I TGGCCA 1 cut(s) 844
MroI TCCGGA 1 cut(s) 808
MroXI GAANNNNTTC 1 cut(s) 905
MscI TGGCCA 1 cut(s) 844
MseI TTAA 1 cut(s) 955
Msp20I TGGCCA 1 cut(s) 844
MspI CCGG 4 cut(s) 17, 22, 722, 809
MunI CAATTG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 225
MvnI CGCG 2 cut(s) 765, 767
MwoI GCNNNNNNNGC 2 cut(s) 22, 490
NdeII GATC 3 cut(s) 273, 619, 852
NlaIII CATG 3 cut(s) 609, 640, 836
NlaIV GGNNCC 3 cut(s) 483, 621, 813
NmuCI GTSAC 1 cut(s) 913
NspI RCATGY 1 cut(s) 640
NspV TTCGAA 1 cut(s) 935
PaeR7I CTCGAG 1 cut(s) 10
PciI ACATGT 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 563
PctI GAATGC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 2 cut(s) 208, 874
PkrI GCNGC 3 cut(s) 257, 540, 816
Ple19I CGATCG 1 cut(s) 855
PleI GAGTC 2 cut(s) 548, 697
PpsI GAGTC 2 cut(s) 548, 697
PscI ACATGT 1 cut(s) 636
PspN4I GGNNCC 3 cut(s) 483, 621, 813
PspPI GGNCC 3 cut(s) 19, 482, 719
PspXI VCTCGAGB 1 cut(s) 10
PsuI RGATCY 1 cut(s) 619
PvuI CGATCG 1 cut(s) 855
RsaI GTAC 6 cut(s) 157, 357, 587, 779, 800, 944
RsaNI GTAC 6 cut(s) 156, 356, 586, 778, 799, 943
Rsr2I CGGWCCG 1 cut(s) 19
RsrII CGGWCCG 1 cut(s) 19
SaqAI TTAA 1 cut(s) 955
SatI GCNGC 3 cut(s) 256, 539, 815
Sau3AI GATC 3 cut(s) 273, 619, 852
Sau96I GGNCC 3 cut(s) 19, 482, 719
ScaI AGTACT 2 cut(s) 157, 357
SchI GAGTC 2 cut(s) 548, 698
SduI GDGCHC 2 cut(s) 73, 130
SfaNI GCATC 4 cut(s) 311, 514, 769, 815
SfiI GGCCNNNNNGGCC 1 cut(s) 490
Sfr274I CTCGAG 1 cut(s) 10
SfuI TTCGAA 1 cut(s) 935
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 10
SmlI CTYRAG 2 cut(s) 10, 926
SmoI CTYRAG 2 cut(s) 10, 926
Sse9I AATT 6 cut(s) 36, 113, 403, 732, 802, 938
SsiI CCGC 3 cut(s) 253, 256, 815
SspMI CTAG 1 cut(s) 74
TaiI ACGT 2 cut(s) 315, 899
TaqI TCGA 4 cut(s) 11, 94, 449, 935
TaqII GACCGA 1 cut(s) 107
TasI AATT 6 cut(s) 36, 113, 403, 732, 802, 938
TatI WGTACW 4 cut(s) 155, 355, 585, 798
TauI GCSGC 2 cut(s) 258, 817
TfiI GAWTC 2 cut(s) 208, 874
Tru1I TTAA 1 cut(s) 955
Tru9I TTAA 1 cut(s) 955
TscAI CASTG 3 cut(s) 300, 312, 922
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 1 cut(s) 538
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 6 cut(s) 17, 22, 43, 434, 524, 851
TspRI CASTG 3 cut(s) 300, 312, 922
VpaK11BI GGWCC 1 cut(s) 19
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 2 cut(s) 113, 732
XceI RCATGY 1 cut(s) 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 709
XhoI CTCGAG 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 1 cut(s) 74
ZrmI AGTACT 2 cut(s) 157, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.