AT5G57620
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014346
Physical Location & Seq
Forward (+)
23334767 .. 23336632
1866 bp
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UTR
Exon/CDS
Intron
AT5G57620.1

Sequence Viewer

Length: 1002 bp
ATGGGAAGAGCTCCATGCTGCGACAAGGCAAACGTGAAGAAAGGACCATGGTCACCGGAAGAAGATGTGAAGCTCAAGGATTACATCGACAAATATGGCACTGGTGGCAACTGGATCGCACTGCCTCAGAAAATTGGGCTGAAGAGATGTGGTAAGAGTTGCAGACTGAGATGGCTTAATTACTTAAGACCAAACATCAAACATGGTGGTTTTTCTGAGGAAGAAGATAGAATCATCTTGAGTCTCTACATTAGCATTGGAAGCCGGTGGTCCATAATTGCAGCTCAGCTTCCTGGAAGGACTGACAATGATATCAAGAATTATTGGAACACAAAACTGAAGAAGAAACTTCTAGGAAGACAGAAACAAATGAATCGTCAAGACTCCATAACCGATTCTACTGAGAACAACCTCAGCAACAATAACAACAATAAGAGTCCTCAGAATCTGAGCAATTCGGCACTGGAGAGGCTCCAGCTTCACATGCAGCTTCAGAATCTACAGAGCCCTTTCTCTAGTTTCTACAACAACCCTATCTTGTGGCCCAAGCTTCATCCATTGCTCCAGAGCACTACAACTAATCAAAACCCTAAGCTTGCATCTCAAGAAAGCTTCCACCCTTTAGGAGTTAACGTTGATCATCAGCACAACAATACCAAGCTAGCTCAGATAAACAATGGAGCCTCTTCTCTCTATTCGGAGAACGTAGAGCAATCCCAAAACCCTGCTCATGAATTTCAACCTAATTTCGGTTTTTCACAGGACCTTCGATTAGATAATCATAACATGGACTTTATGAACAGAGGGGTTTCTAAAGAACTGTTTCAAGTGGGCAACGAGTTTGAGCTAACGAACGGTTCGAGTTGGTGGTCAGAGGAAGTGGAACTAGAGAGGAAAACGACGTCGTCGAGTTCTTGGGGGTCAGCTTCTGTGCTTGATCAGACAACTGAGGGAATGGTTATGCTTCAAGATTACGCTCAGATGAGCTACCACAGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0001704 GO:0001706 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0007369 GO:0007492 GO:0008150 GO:0008285 GO:0009505 GO:0009531 GO:0009653 GO:0009790 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0030154 GO:0030312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0035987 GO:0042127 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0048226 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048598 GO:0048646 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051094 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905421 GO:2000026 GO:2000067 GO:2000112 GO:2000113 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

333

Amino Acids

37.98

Weight (kDa)

8.23

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 6.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 2.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 111 4.3e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57620
fragaria_vesca FvH4_4g09030
malus_domestica MD13G1266500.v1.1 MD16G1266600.v1.1
prunus_persica Prupe.1G089700_v2.0.a1
pyrus_communis pycom13g22950 pycom16g23540
rosa_chinensis RchiOBHm_Chr4g0403351
rosa_laevigata RLG00000008981
rosa_multiflora Rmu_sc0000381.1_g000013
rosa_roxburghii Rroxscaffold_5G00347990
rosa_rugosa Rorug04G0041600
rosa_samantha Rh4AG118500 Rh4BG111100 Rh4CG125900 Rh4DG111200
rosa_wichuraiana Rw4G009620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 905
AclI AACGTT 1 cut(s) 633
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 734
AcuI CTGAAG 3 cut(s) 161, 359, 476
AcyI GRCGYC 1 cut(s) 902
AfiI CCNNNNNNNGG 1 cut(s) 749
AflII CTTAAG 1 cut(s) 184
AgsI TTSAA 3 cut(s) 740, 827, 968
AjnI CCWGG 1 cut(s) 292
Alw21I GWGCWC 2 cut(s) 13, 572
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 2 cut(s) 448, 929
AoxI GGCC 1 cut(s) 542
ApeKI GCWGC 3 cut(s) 18, 281, 487
ApoI RAATTY 1 cut(s) 734
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
Asp700I GAANNNNTTC 1 cut(s) 822
AspS9I GGNCC 4 cut(s) 44, 270, 543, 763
AsuHPI GGTGA 1 cut(s) 45
AsuNHI GCTAGC 1 cut(s) 661
AvaII GGWCC 3 cut(s) 44, 270, 763
BanII GRGCYC 2 cut(s) 13, 509
BbsI GAAGAC 1 cut(s) 364
Bbv12I GWGCWC 2 cut(s) 13, 572
BbvCI CCTCAGC 1 cut(s) 413
BbvI GCAGC 3 cut(s) 5, 293, 499
BccI CCATC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 2 cut(s) 637, 937
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 4 cut(s) 353, 516, 662, 887
BfmI CTRYAG 1 cut(s) 500
BfrI CTTAAG 1 cut(s) 184
BisI GCNGC 3 cut(s) 19, 282, 488
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 3 cut(s) 20, 283, 489
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 3 cut(s) 44, 270, 763
BmgT120I GGNCC 4 cut(s) 44, 270, 543, 763
BmiI GGNNCC 2 cut(s) 473, 682
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 608
BmtI GCTAGC 1 cut(s) 665
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 364
BpmI CTGGAG 3 cut(s) 458, 485, 548
Bpu10I CCTNAGC 2 cut(s) 413, 591
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 3 cut(s) 59, 259, 588
BsaHI GRCGYC 1 cut(s) 902
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse118I RCCGGY 1 cut(s) 264
Bse1I ACTGG 3 cut(s) 106, 116, 468
Bse3DI GCAATG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 553
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMI GCAATG 1 cut(s) 557
BseNI ACTGG 3 cut(s) 106, 116, 468
BseXI GCAGC 3 cut(s) 5, 293, 499
BshFI GGCC 1 cut(s) 544
BsiHKAI GWGCWC 2 cut(s) 13, 572
BsiSI CCGG 2 cut(s) 56, 265
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 1 cut(s) 544
Bsp1286I GDGCHC 3 cut(s) 13, 509, 572
Bsp143I GATC 3 cut(s) 114, 637, 937
Bsp1720I GCTNAGC 1 cut(s) 285
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 1 cut(s) 544
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 2 cut(s) 473, 682
BspOI GCTAGC 1 cut(s) 665
BspPI GGATC 1 cut(s) 122
BspTI CTTAAG 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 264
BsrI ACTGG 3 cut(s) 106, 116, 468
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 3 cut(s) 114, 637, 937
BssNI GRCGYC 1 cut(s) 902
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 822, 857, 995
Bst6I CTCTTC 2 cut(s) 137, 691
BstACI GRCGYC 1 cut(s) 902
BstAFI CTTAAG 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 597, 663
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 1 cut(s) 553
BstKTI GATC 3 cut(s) 117, 640, 940
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 3 cut(s) 114, 637, 937
BstMWI GCNNNNNNNGC 3 cut(s) 105, 261, 484
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 487
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 500
BstV1I GCAGC 3 cut(s) 5, 293, 499
BstV2I GAAGAC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 544
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 553
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 4 cut(s) 99, 119, 461, 1000
Cac8I GCNNGC 2 cut(s) 597, 663
CaiI CAGNNNCTG 2 cut(s) 448, 929
CciI TCATGA 1 cut(s) 730
Cfr10I RCCGGY 1 cut(s) 264
Cfr13I GGNCC 4 cut(s) 44, 270, 543, 763
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 6 cut(s) 15, 48, 203, 484, 731, 787
DpnI GATC 3 cut(s) 116, 639, 939
DpnII GATC 3 cut(s) 114, 637, 937
Eam1104I CTCTTC 2 cut(s) 137, 691
EarI CTCTTC 2 cut(s) 137, 691
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 2 cut(s) 13, 509
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 3 cut(s) 44, 270, 763
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 161, 359, 476
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 763
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 292
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 2 cut(s) 13, 509
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 6 cut(s) 18, 51, 206, 487, 734, 790
FatI CATG 6 cut(s) 14, 47, 202, 483, 730, 786
FbaI TGATCA 2 cut(s) 637, 937
Fnu4HI GCNGC 3 cut(s) 19, 282, 488
FokI GGATG 1 cut(s) 540
FriOI GRGCYC 2 cut(s) 13, 509
Fsp4HI GCNGC 3 cut(s) 19, 282, 488
FspBI CTAG 4 cut(s) 353, 516, 662, 887
GluI GCNGC 3 cut(s) 19, 282, 488
GsuI CTGGAG 3 cut(s) 458, 485, 548
HaeIII GGCC 1 cut(s) 544
HapII CCGG 2 cut(s) 56, 265
Hin1I GRCGYC 1 cut(s) 902
Hin1II CATG 6 cut(s) 18, 51, 206, 487, 734, 790
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 3 cut(s) 548, 593, 610
HinfI GANTC 8 cut(s) 231, 241, 373, 383, 395, 436, 445, 496
HpaI GTTAAC 1 cut(s) 631
HpaII CCGG 2 cut(s) 56, 265
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 631
Hpy188III TCNNGA 7 cut(s) 238, 316, 380, 565, 605, 731, 968
Hpy8I GTNNAC 1 cut(s) 631
Hpy99I CGWCG 3 cut(s) 904, 907, 910
HpyAV CCTTC 2 cut(s) 291, 776
HpyCH4III ACNGT 3 cut(s) 822, 857, 995
HpyCH4IV ACGT 4 cut(s) 33, 633, 705, 902
HpyCH4V TGCA 4 cut(s) 162, 281, 487, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 261, 484
HpySE526I ACGT 4 cut(s) 33, 633, 705, 902
Hsp92I GRCGYC 1 cut(s) 902
Hsp92II CATG 6 cut(s) 18, 51, 206, 487, 734, 790
Ksp22I TGATCA 2 cut(s) 637, 937
KspAI GTTAAC 1 cut(s) 631
Kzo9I GATC 3 cut(s) 114, 637, 937
LmnI GCTCC 4 cut(s) 16, 477, 567, 680
Lsp1109I GCAGC 3 cut(s) 5, 293, 499
LweI GCATC 1 cut(s) 608
MaeI CTAG 4 cut(s) 353, 516, 662, 887
MaeII ACGT 4 cut(s) 33, 633, 705, 902
MaeIII GTNAC 1 cut(s) 51
MalI GATC 3 cut(s) 116, 639, 939
MboI GATC 3 cut(s) 114, 637, 937
MhlI GDGCHC 3 cut(s) 13, 509, 572
MluCI AATT 7 cut(s) 132, 178, 276, 319, 454, 734, 745
MlyI GAGTC 3 cut(s) 250, 377, 445
MroXI GAANNNNTTC 1 cut(s) 822
MseI TTAA 4 cut(s) 177, 185, 630, 1000
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 2 cut(s) 56, 265
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 105, 261, 484
NcoI CCATGG 1 cut(s) 47
NdeII GATC 3 cut(s) 114, 637, 937
NheI GCTAGC 1 cut(s) 661
NlaIII CATG 6 cut(s) 18, 51, 206, 487, 734, 790
NlaIV GGNNCC 2 cut(s) 473, 682
NmuCI GTSAC 1 cut(s) 51
NspI RCATGY 1 cut(s) 487
PagI TCATGA 1 cut(s) 730
PcsI WCGNNNNNNNCGW 2 cut(s) 857, 905
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 5 cut(s) 231, 373, 395, 445, 496
PflFI GACNNNGTC 1 cut(s) 904
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 3 cut(s) 20, 283, 489
PleI GAGTC 3 cut(s) 249, 377, 444
PpsI GAGTC 3 cut(s) 249, 377, 444
PpuMI RGGWCCY 1 cut(s) 763
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 292
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 473, 682
PspPI GGNCC 4 cut(s) 44, 270, 543, 763
PspPPI RGGWCCY 1 cut(s) 763
PstNI CAGNNNCTG 2 cut(s) 448, 929
PsyI GACNNNGTC 1 cut(s) 904
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 4 cut(s) 177, 185, 630, 1000
SatI GCNGC 3 cut(s) 19, 282, 488
Sau3AI GATC 3 cut(s) 114, 637, 937
Sau96I GGNCC 4 cut(s) 44, 270, 543, 763
SchI GAGTC 3 cut(s) 250, 377, 445
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 3 cut(s) 13, 509, 572
SfaNI GCATC 1 cut(s) 608
SfcI CTRYAG 1 cut(s) 500
SinI GGWCC 3 cut(s) 44, 270, 763
SmlI CTYRAG 4 cut(s) 74, 184, 238, 603
SmoI CTYRAG 4 cut(s) 74, 184, 238, 603
Sse9I AATT 7 cut(s) 132, 178, 276, 319, 454, 734, 745
SspMI CTAG 4 cut(s) 353, 516, 662, 887
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 822, 857, 995
TaiI ACGT 4 cut(s) 36, 636, 708, 905
TaqI TCGA 4 cut(s) 87, 769, 860, 908
TasI AATT 7 cut(s) 132, 178, 276, 319, 454, 734, 745
TfiI GAWTC 5 cut(s) 231, 373, 395, 445, 496
Tru1I TTAA 4 cut(s) 177, 185, 630, 1000
Tru9I TTAA 4 cut(s) 177, 185, 630, 1000
TscAI CASTG 4 cut(s) 106, 126, 468, 1000
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 3 cut(s) 18, 281, 487
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 4 cut(s) 386, 542, 747, 812
TspRI CASTG 4 cut(s) 106, 126, 468, 1000
Tth111I GACNNNGTC 1 cut(s) 904
Vha464I CTTAAG 1 cut(s) 184
VpaK11BI GGWCC 3 cut(s) 44, 270, 763
XapI RAATTY 1 cut(s) 734
XceI RCATGY 1 cut(s) 487
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 4 cut(s) 353, 516, 662, 887
ZraI GACGTC 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.