FvH4_4g09030
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
10152665 .. 10154496
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09030.t1

Sequence Viewer

Length: 993 bp
ATGGGTCGAGCTCCTTGCTGCGATAAGGCGAACGTGAAGAAGGGACCCTGGTCACCTGAAGAAGATGCTACACTCAAGGCTTATATTGAAGAGCATGGCACTGGAGGCAACTGGATTGCCCTTCCTCAGAAAATTGGGCTCAAAAGATGTGGAAAAAGCTGCAGACTACGTTGGTTAAACTATCTGAGGCCCAACATCAAGCATGGTGGATTCTCAGAAGAAGAAGACAACATCATCTGCAACCTCTATATCAGTATAGGCAGCAGGTGGTCTATAATTGCAGCCCAATTGCCCGGAAGAACTGATAATGATATCAAGAACTACTGGAACACCCGGCTGAAGAAGAAGTTGCTCGGAAGGCGCAAACAGTCCGGTGCTAATCGGGGAAGTCAGGACCTTAAGGATGCCGCCGATGACGCGCATCAGGCTTTAAGCAGCTCAGCCCTCGAGAGACTTCAACTTCATATGCAACTGCAGAACCTTCAGAACCCATTCTCTTTCTACAACAACCCTGCCCTGTGGCCCAAGCTGCATCCCTTCCAGGAAAAGATGATCCAGACCGCCCAATGCATGAATGATCAAAACTCTAGCAACCCTCTGATGATGCAGCAGTTTTCTGTCTCAACTCATGATCAAACAGTGCAAGGTCACAAGGTTAACGACCATTTCTATGAACAAACTGCTGGTGCTTTGGCAATTCAGGAGCAATATGCAAAACTATGCATCAACCCCAAGATGGATGAATTGGAGAACGCGTTGAATGGCATGTCATCCTCCTTCATATCTGCTACAAGCAATCCTGTGGACTCTACTATTGTGATTCCGAAAGCCGATCATATTGAGCGGCAGGAAATGAATGTCTCCAAGGAAAGCTTGATGTGGTGGGCTAATGACTTCGACAACAAATCTGTGTCATCAAACTCCTGGGATTCCACTTCCGTTCTTCAGTCACAAGGGATGTTTCAAGATTACGAATTAGGTTATAACCTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

331

Amino Acids

37.37

Weight (kDa)

6.75

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 1.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 2.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 4.7e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57620
fragaria_vesca FvH4_4g09030
malus_domestica MD13G1266500.v1.1 MD16G1266600.v1.1
prunus_persica Prupe.1G089700_v2.0.a1
pyrus_communis pycom13g22950 pycom16g23540
rosa_chinensis RchiOBHm_Chr4g0403351
rosa_laevigata RLG00000008981
rosa_multiflora Rmu_sc0000381.1_g000013
rosa_roxburghii Rroxscaffold_5G00347990
rosa_rugosa Rorug04G0041600
rosa_samantha Rh4AG118500 Rh4BG111100 Rh4CG125900 Rh4DG111200
rosa_wichuraiana Rw4G009620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 984
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 844
AccII CGCG 2 cut(s) 419, 755
AciI CCGC 3 cut(s) 408, 561, 844
AclWI GGATC 1 cut(s) 547
AcuI CTGAAG 4 cut(s) 78, 359, 467, 929
AfiI CCNNNNNNNGG 1 cut(s) 736
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 753
AgsI TTSAA 4 cut(s) 89, 458, 760, 965
AjnI CCWGG 3 cut(s) 47, 540, 923
AluBI AGCT 5 cut(s) 11, 159, 438, 529, 873
AluI AGCT 5 cut(s) 11, 159, 438, 529, 873
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 3 cut(s) 445, 625, 865
AlwI GGATC 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 2 cut(s) 188, 521
ApeKI GCWGC 7 cut(s) 18, 159, 261, 281, 435, 529, 607
Asp700I GAANNNNTTC 1 cut(s) 491
AspLEI GCGC 2 cut(s) 363, 421
AspS9I GGNCC 4 cut(s) 44, 189, 394, 522
AsuC2I CCSGG 2 cut(s) 294, 334
AsuHPI GGTGA 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 2 cut(s) 44, 394
BanII GRGCYC 2 cut(s) 13, 141
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 7 cut(s) 5, 146, 273, 293, 447, 516, 619
BccI CCATC 1 cut(s) 730
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 3 cut(s) 49, 542, 925
BclI TGATCA 2 cut(s) 577, 631
BcnI CCSGG 2 cut(s) 294, 334
BcoDI GTCTC 3 cut(s) 445, 625, 865
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 3 cut(s) 160, 473, 989
BfrI CTTAAG 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 9 cut(s) 19, 160, 262, 282, 408, 436, 530, 608, 845
BlpI GCTNAGC 1 cut(s) 439
BlsI GCNGC 9 cut(s) 20, 161, 263, 283, 409, 437, 531, 609, 846
Bme1390I CCNGG 5 cut(s) 49, 294, 334, 542, 925
Bme18I GGWCC 2 cut(s) 44, 394
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 4 cut(s) 44, 189, 394, 522
BmiI GGNNCC 2 cut(s) 45, 46
BmrFI CCNGG 5 cut(s) 49, 294, 334, 542, 925
BmsI GCATC 6 cut(s) 55, 394, 430, 541, 594, 732
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 439
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 2 cut(s) 294, 334
BsaJI CCNNGG 3 cut(s) 47, 864, 924
BsaWI WCCGGW 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 1 cut(s) 736
Bse1I ACTGG 3 cut(s) 106, 116, 329
BseBI CCWGG 3 cut(s) 49, 542, 925
BseDI CCNNGG 3 cut(s) 47, 864, 924
BseGI GGATG 5 cut(s) 409, 532, 745, 770, 963
BseLI CCNNNNNNNGG 1 cut(s) 736
BseMII CTCAG 4 cut(s) 140, 176, 228, 453
BseNI ACTGG 3 cut(s) 106, 116, 329
BseXI GCAGC 7 cut(s) 5, 146, 273, 293, 447, 516, 619
Bsh1236I CGCG 2 cut(s) 419, 755
BshFI GGCC 2 cut(s) 190, 523
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 3 cut(s) 294, 334, 372
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 736
BsmAI GTCTC 3 cut(s) 445, 625, 865
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 2 cut(s) 190, 523
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 13, 141
Bsp143I GATC 4 cut(s) 552, 577, 631, 832
Bsp1720I GCTNAGC 1 cut(s) 439
BspACI CCGC 3 cut(s) 408, 561, 844
BspANI GGCC 2 cut(s) 190, 523
BspCNI CTCAG 4 cut(s) 139, 177, 227, 452
BspFNI CGCG 2 cut(s) 419, 755
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 2 cut(s) 45, 46
BspMAI CTGCAG 2 cut(s) 164, 477
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 547
BspQI GCTCTTC 1 cut(s) 84
BspTI CTTAAG 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 844
BsrI ACTGG 3 cut(s) 106, 116, 329
BssECI CCNNGG 3 cut(s) 47, 864, 924
BssMI GATC 4 cut(s) 552, 577, 631, 832
BssT1I CCWWGG 1 cut(s) 864
Bst2UI CCWGG 3 cut(s) 49, 542, 925
Bst4CI ACNGT 2 cut(s) 369, 640
Bst6I CTCTTC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 398
BstDEI CTNAG 4 cut(s) 126, 185, 214, 439
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 5 cut(s) 409, 532, 745, 770, 963
BstFNI CGCG 2 cut(s) 419, 755
BstHHI GCGC 2 cut(s) 363, 421
BstKTI GATC 4 cut(s) 555, 580, 634, 835
BstMAI GTCTC 3 cut(s) 445, 625, 865
BstMBI GATC 4 cut(s) 552, 577, 631, 832
BstMWI GCNNNNNNNGC 5 cut(s) 105, 358, 416, 425, 529
BstNI CCWGG 3 cut(s) 49, 542, 925
BstNSI RCATGY 1 cut(s) 769
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 5 cut(s) 47, 292, 332, 540, 923
BstSFI CTRYAG 3 cut(s) 160, 473, 989
BstUI CGCG 2 cut(s) 419, 755
BstV1I GCAGC 7 cut(s) 5, 146, 273, 293, 447, 516, 619
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 190, 523
BtsCI GGATG 5 cut(s) 409, 532, 745, 770, 963
BtsIMutI CAGTG 2 cut(s) 99, 645
BveI ACCTGC 1 cut(s) 255
CciI TCATGA 1 cut(s) 628
CfoI GCGC 2 cut(s) 363, 421
Cfr13I GGNCC 4 cut(s) 44, 189, 394, 522
CseI GACGC 1 cut(s) 425
CspCI CAANNNNNGTGG 4 cut(s) 130, 165, 187, 222
CviAII CATG 5 cut(s) 95, 203, 571, 629, 766
DdeI CTNAG 4 cut(s) 126, 185, 214, 439
DpnI GATC 4 cut(s) 554, 579, 633, 834
DpnII GATC 4 cut(s) 552, 577, 631, 832
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 864
Eco24I GRGCYC 2 cut(s) 13, 141
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 2 cut(s) 44, 394
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 4 cut(s) 78, 359, 467, 929
Eco88I CYCGRG 1 cut(s) 446
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO109I RGGNCCY 2 cut(s) 44, 394
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 3 cut(s) 47, 540, 923
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 864
EcoT22I ATGCAT 2 cut(s) 572, 725
EcoT38I GRGCYC 2 cut(s) 13, 141
ErhI CCWWGG 1 cut(s) 864
FaeI CATG 5 cut(s) 98, 206, 574, 632, 769
FalI AAGNNNNNCTT 2 cut(s) 857, 889
FaqI GGGAC 1 cut(s) 57
FatI CATG 5 cut(s) 94, 202, 570, 628, 765
FauNDI CATATG 1 cut(s) 465
FbaI TGATCA 2 cut(s) 577, 631
Fnu4HI GCNGC 9 cut(s) 19, 160, 262, 282, 408, 436, 530, 608, 845
FokI GGATG 5 cut(s) 416, 519, 752, 757, 970
FriOI GRGCYC 2 cut(s) 13, 141
Fsp4HI GCNGC 9 cut(s) 19, 160, 262, 282, 408, 436, 530, 608, 845
FspBI CTAG 1 cut(s) 588
GlaI GCGC 2 cut(s) 362, 420
GluI GCNGC 9 cut(s) 19, 160, 262, 282, 408, 436, 530, 608, 845
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 2 cut(s) 190, 523
HapII CCGG 3 cut(s) 294, 334, 372
HgaI GACGC 1 cut(s) 425
HhaI GCGC 2 cut(s) 363, 421
Hin1II CATG 5 cut(s) 98, 206, 574, 632, 769
Hin6I GCGC 2 cut(s) 361, 419
HinP1I GCGC 2 cut(s) 361, 419
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HindIII AAGCTT 1 cut(s) 871
HinfI GANTC 4 cut(s) 210, 806, 820, 929
HpaI GTTAAC 1 cut(s) 658
HpaII CCGG 3 cut(s) 294, 334, 372
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 658, 805
Hpy188I TCNGA 7 cut(s) 129, 186, 217, 356, 486, 600, 825
Hpy188III TCNNGA 7 cut(s) 316, 392, 448, 556, 629, 701, 965
Hpy8I GTNNAC 2 cut(s) 658, 805
HpyAV CCTTC 6 cut(s) 34, 131, 351, 491, 547, 787
HpyCH4III ACNGT 2 cut(s) 369, 640
HpyCH4IV ACGT 2 cut(s) 33, 169
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 358, 416, 425, 529
HpyF3I CTNAG 4 cut(s) 126, 185, 214, 439
HpySE526I ACGT 2 cut(s) 33, 169
Hsp92II CATG 5 cut(s) 98, 206, 574, 632, 769
HspAI GCGC 2 cut(s) 361, 419
KflI GGGWCCC 1 cut(s) 44
Ksp22I TGATCA 2 cut(s) 577, 631
KspAI GTTAAC 1 cut(s) 658
Kzo9I GATC 4 cut(s) 552, 577, 631, 832
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 16, 703
Lsp1109I GCAGC 7 cut(s) 5, 146, 273, 293, 447, 516, 619
LweI GCATC 6 cut(s) 55, 394, 430, 541, 594, 732
MaeI CTAG 1 cut(s) 588
MaeII ACGT 2 cut(s) 33, 169
MaeIII GTNAC 3 cut(s) 51, 647, 948
MalI GATC 4 cut(s) 554, 579, 633, 834
MbiI CCGCTC 1 cut(s) 844
MboI GATC 4 cut(s) 552, 577, 631, 832
MfeI CAATTG 1 cut(s) 287
MhlI GDGCHC 2 cut(s) 13, 141
MluCI AATT 6 cut(s) 132, 276, 287, 696, 743, 974
MluI ACGCGT 1 cut(s) 753
MlyI GAGTC 1 cut(s) 800
MnlI CCTC 7 cut(s) 98, 135, 180, 254, 455, 606, 784
Mph1103I ATGCAT 2 cut(s) 572, 725
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 4 cut(s) 176, 399, 431, 657
MslI CAYNNNNRTG 1 cut(s) 669
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 3 cut(s) 294, 334, 372
MspR9I CCNGG 5 cut(s) 49, 294, 334, 542, 925
MunI CAATTG 1 cut(s) 287
MvaI CCWGG 3 cut(s) 49, 542, 925
MvnI CGCG 2 cut(s) 419, 755
MwoI GCNNNNNNNGC 5 cut(s) 105, 358, 416, 425, 529
NciI CCSGG 2 cut(s) 294, 334
NdeI CATATG 1 cut(s) 465
NdeII GATC 4 cut(s) 552, 577, 631, 832
NlaIII CATG 5 cut(s) 98, 206, 574, 632, 769
NlaIV GGNNCC 2 cut(s) 45, 46
NmuCI GTSAC 3 cut(s) 51, 647, 948
NsiI ATGCAT 2 cut(s) 572, 725
NspI RCATGY 1 cut(s) 769
PaeR7I CTCGAG 1 cut(s) 446
PagI TCATGA 1 cut(s) 628
PaqCI CACCTGC 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 3 cut(s) 210, 820, 929
PfoI TCCNGGA 1 cut(s) 540
PkrI GCNGC 9 cut(s) 20, 161, 263, 283, 409, 437, 531, 609, 846
PleI GAGTC 1 cut(s) 800
PpsI GAGTC 1 cut(s) 800
PpuMI RGGWCCY 2 cut(s) 44, 394
PshAI GACNNNNGTC 1 cut(s) 49
PsiI TTATAA 1 cut(s) 984
Psp124BI GAGCTC 1 cut(s) 13
Psp5II RGGWCCY 2 cut(s) 44, 394
Psp6I CCWGG 3 cut(s) 47, 540, 923
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 3 cut(s) 47, 540, 923
PspN4I GGNNCC 2 cut(s) 45, 46
PspPI GGNCC 4 cut(s) 44, 189, 394, 522
PspPPI RGGWCCY 2 cut(s) 44, 394
PstI CTGCAG 2 cut(s) 164, 477
RseI CAYNNNNRTG 1 cut(s) 669
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 176, 399, 431, 657
SatI GCNGC 9 cut(s) 19, 160, 262, 282, 408, 436, 530, 608, 845
Sau3AI GATC 4 cut(s) 552, 577, 631, 832
Sau96I GGNCC 4 cut(s) 44, 189, 394, 522
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 5 cut(s) 49, 294, 334, 542, 925
SduI GDGCHC 2 cut(s) 13, 141
SfaNI GCATC 6 cut(s) 55, 394, 430, 541, 594, 732
SfcI CTRYAG 3 cut(s) 160, 473, 989
Sfr274I CTCGAG 1 cut(s) 446
SinI GGWCC 2 cut(s) 44, 394
SlaI CTCGAG 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 3 cut(s) 74, 398, 446
SmoI CTYRAG 3 cut(s) 74, 398, 446
Sse9I AATT 6 cut(s) 132, 276, 287, 696, 743, 974
SsiI CCGC 3 cut(s) 408, 561, 844
SspMI CTAG 1 cut(s) 588
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 5 cut(s) 47, 292, 332, 540, 923
StyI CCWWGG 1 cut(s) 864
TaaI ACNGT 2 cut(s) 369, 640
TaiI ACGT 2 cut(s) 36, 172
TaqI TCGA 3 cut(s) 7, 447, 897
TasI AATT 6 cut(s) 132, 276, 287, 696, 743, 974
TauI GCSGC 2 cut(s) 410, 847
TfiI GAWTC 3 cut(s) 210, 820, 929
Tru1I TTAA 4 cut(s) 176, 399, 431, 657
Tru9I TTAA 4 cut(s) 176, 399, 431, 657
TscAI CASTG 2 cut(s) 106, 645
TseFI GTSAC 3 cut(s) 51, 647, 948
TseI GCWGC 7 cut(s) 18, 159, 261, 281, 435, 529, 607
Tsp45I GTSAC 3 cut(s) 51, 647, 948
TspDTI ATGAA 6 cut(s) 452, 587, 687, 756, 769, 869
TspGWI ACGGA 1 cut(s) 928
TspRI CASTG 2 cut(s) 106, 645
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 2 cut(s) 44, 394
XceI RCATGY 1 cut(s) 769
XhoI CTCGAG 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 1 cut(s) 588
Zsp2I ATGCAT 2 cut(s) 572, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.