transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G57620 |
| fragaria_vesca | FvH4_4g09030 |
| malus_domestica | MD13G1266500.v1.1 MD16G1266600.v1.1 |
| prunus_persica | Prupe.1G089700_v2.0.a1 |
| pyrus_communis | pycom13g22950 pycom16g23540 |
| rosa_chinensis | RchiOBHm_Chr4g0403351 |
| rosa_laevigata | RLG00000008981 |
| rosa_multiflora | Rmu_sc0000381.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00347990 |
| rosa_rugosa | Rorug04G0041600 |
| rosa_samantha | Rh4AG118500 Rh4BG111100 Rh4CG125900 Rh4DG111200 |
| rosa_wichuraiana | Rw4G009620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 966 |
| AarI | CACCTGC | 1 cut(s) | 138 |
| Acc36I | ACCTGC | 2 cut(s) | 138, 718 |
| AccII | CGCG | 1 cut(s) | 704 |
| AclWI | GGATC | 1 cut(s) | 430 |
| AcsI | RAATTY | 1 cut(s) | 815 |
| AcuI | CTGAAG | 3 cut(s) | 242, 350, 911 |
| AgsI | TTSAA | 6 cut(s) | 341, 584, 643, 815, 829, 947 |
| AjnI | CCWGG | 2 cut(s) | 905, 933 |
| AluBI | AGCT | 5 cut(s) | 42, 321, 741, 749, 855 |
| AluI | AGCT | 5 cut(s) | 42, 321, 741, 749, 855 |
| Alw26I | GTCTC | 1 cut(s) | 847 |
| AlwI | GGATC | 1 cut(s) | 430 |
| Ama87I | CYCGRG | 1 cut(s) | 329 |
| AoxI | GGCC | 4 cut(s) | 71, 324, 404, 529 |
| ApeKI | GCWGC | 7 cut(s) | 42, 144, 164, 318, 490, 724, 793 |
| ApoI | RAATTY | 1 cut(s) | 815 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 374 |
| AspLEI | GCGC | 1 cut(s) | 246 |
| AspS9I | GGNCC | 4 cut(s) | 72, 277, 325, 405 |
| AsuC2I | CCSGG | 2 cut(s) | 177, 217 |
| AvaI | CYCGRG | 1 cut(s) | 329 |
| AvaII | GGWCC | 1 cut(s) | 277 |
| AxyI | CCTNAGG | 1 cut(s) | 68 |
| BanII | GRGCYC | 1 cut(s) | 24 |
| BbsI | GAAGAC | 1 cut(s) | 114 |
| BbvI | GCAGC | 7 cut(s) | 29, 156, 176, 330, 502, 736, 805 |
| BccI | CCATC | 4 cut(s) | 48, 613, 752, 802 |
| BciT130I | CCWGG | 2 cut(s) | 907, 935 |
| BclI | TGATCA | 3 cut(s) | 460, 514, 802 |
| BcnI | CCSGG | 2 cut(s) | 177, 217 |
| BcoDI | GTCTC | 1 cut(s) | 847 |
| BfmI | CTRYAG | 2 cut(s) | 43, 971 |
| BfuAI | ACCTGC | 2 cut(s) | 138, 718 |
| BisI | GCNGC | 7 cut(s) | 43, 145, 165, 319, 491, 725, 794 |
| BlsI | GCNGC | 7 cut(s) | 44, 146, 166, 320, 492, 726, 795 |
| Bme1390I | CCNGG | 4 cut(s) | 177, 217, 907, 935 |
| Bme18I | GGWCC | 1 cut(s) | 277 |
| BmeT110I | CYCGRG | 1 cut(s) | 329 |
| BmgT120I | GGNCC | 4 cut(s) | 72, 277, 325, 405 |
| BmrFI | CCNGG | 4 cut(s) | 177, 217, 907, 935 |
| BmrI | ACTGGG | 1 cut(s) | 501 |
| BmsI | GCATC | 6 cut(s) | 277, 289, 424, 477, 615, 902 |
| BmuI | ACTGGG | 1 cut(s) | 501 |
| BpiI | GAAGAC | 1 cut(s) | 114 |
| BpuEI | CTTGAG | 1 cut(s) | 266 |
| BpuMI | CCSGG | 2 cut(s) | 177, 217 |
| BsaBI | GATNNNNATC | 1 cut(s) | 303 |
| BsaJI | CCNNGG | 4 cut(s) | 846, 906, 933, 934 |
| BsaWI | WCCGGW | 1 cut(s) | 679 |
| Bse1I | ACTGG | 3 cut(s) | 212, 507, 571 |
| Bse21I | CCTNAGG | 1 cut(s) | 68 |
| Bse8I | GATNNNNATC | 1 cut(s) | 303 |
| BseBI | CCWGG | 2 cut(s) | 907, 935 |
| BseDI | CCNNGG | 4 cut(s) | 846, 906, 933, 934 |
| BseGI | GGATG | 5 cut(s) | 292, 415, 628, 653, 945 |
| BseJI | GATNNNNATC | 1 cut(s) | 303 |
| BseMII | CTCAG | 3 cut(s) | 41, 59, 111 |
| BseNI | ACTGG | 3 cut(s) | 212, 507, 571 |
| BseXI | GCAGC | 7 cut(s) | 29, 156, 176, 330, 502, 736, 805 |
| BsgI | GTGCAG | 1 cut(s) | 381 |
| Bsh1236I | CGCG | 1 cut(s) | 704 |
| BshFI | GGCC | 4 cut(s) | 73, 326, 406, 531 |
| BsiHKCI | CYCGRG | 1 cut(s) | 329 |
| BsiSI | CCGG | 3 cut(s) | 177, 217, 680 |
| BslFI | GGGAC | 2 cut(s) | 488, 916 |
| BsmAI | GTCTC | 1 cut(s) | 847 |
| BsmFI | GGGAC | 2 cut(s) | 488, 916 |
| BsnI | GGCC | 4 cut(s) | 73, 326, 406, 531 |
| BsoBI | CYCGRG | 1 cut(s) | 329 |
| Bsp1286I | GDGCHC | 1 cut(s) | 24 |
| Bsp143I | GATC | 5 cut(s) | 435, 460, 514, 717, 802 |
| Bsp68I | TCGCGA | 1 cut(s) | 704 |
| BspANI | GGCC | 4 cut(s) | 73, 326, 406, 531 |
| BspCNI | CTCAG | 3 cut(s) | 42, 60, 110 |
| BspFNI | CGCG | 1 cut(s) | 704 |
| BspHI | TCATGA | 1 cut(s) | 511 |
| BspMAI | CTGCAG | 1 cut(s) | 47 |
| BspMI | ACCTGC | 2 cut(s) | 138, 718 |
| BspPI | GGATC | 1 cut(s) | 430 |
| BsrI | ACTGG | 3 cut(s) | 212, 507, 571 |
| BssECI | CCNNGG | 4 cut(s) | 846, 906, 933, 934 |
| BssMI | GATC | 5 cut(s) | 435, 460, 514, 717, 802 |
| BssT1I | CCWWGG | 1 cut(s) | 846 |
| Bst2UI | CCWGG | 2 cut(s) | 907, 935 |
| Bst4CI | ACNGT | 3 cut(s) | 402, 445, 523 |
| BstC8I | GCNNGC | 1 cut(s) | 248 |
| BstDEI | CTNAG | 3 cut(s) | 50, 68, 97 |
| BstF5I | GGATG | 5 cut(s) | 292, 415, 628, 653, 945 |
| BstFNI | CGCG | 1 cut(s) | 704 |
| BstHHI | GCGC | 1 cut(s) | 246 |
| BstKTI | GATC | 5 cut(s) | 438, 463, 517, 720, 805 |
| BstMAI | GTCTC | 1 cut(s) | 847 |
| BstMBI | GATC | 5 cut(s) | 435, 460, 514, 717, 802 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 241, 308, 412 |
| BstNI | CCWGG | 2 cut(s) | 907, 935 |
| BstNSI | RCATGY | 1 cut(s) | 652 |
| BstSCI | CCNGG | 4 cut(s) | 175, 215, 905, 933 |
| BstSFI | CTRYAG | 2 cut(s) | 43, 971 |
| BstUI | CGCG | 1 cut(s) | 704 |
| BstV1I | GCAGC | 7 cut(s) | 29, 156, 176, 330, 502, 736, 805 |
| BstV2I | GAAGAC | 1 cut(s) | 114 |
| Bsu36I | CCTNAGG | 1 cut(s) | 68 |
| BsuRI | GGCC | 4 cut(s) | 73, 326, 406, 531 |
| BtsCI | GGATG | 5 cut(s) | 292, 415, 628, 653, 945 |
| BtsIMutI | CAGTG | 2 cut(s) | 398, 528 |
| BtuMI | TCGCGA | 1 cut(s) | 704 |
| BveI | ACCTGC | 2 cut(s) | 138, 718 |
| Cac8I | GCNNGC | 1 cut(s) | 248 |
| CciI | TCATGA | 1 cut(s) | 511 |
| CfoI | GCGC | 1 cut(s) | 246 |
| Cfr13I | GGNCC | 4 cut(s) | 72, 277, 325, 405 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 13, 48, 70, 105 |
| CviAII | CATG | 4 cut(s) | 86, 454, 512, 649 |
| DdeI | CTNAG | 3 cut(s) | 50, 68, 97 |
| DpnI | GATC | 5 cut(s) | 437, 462, 516, 719, 804 |
| DpnII | GATC | 5 cut(s) | 435, 460, 514, 717, 802 |
| Eco130I | CCWWGG | 1 cut(s) | 846 |
| Eco24I | GRGCYC | 1 cut(s) | 24 |
| Eco32I | GATATC | 1 cut(s) | 196 |
| Eco47I | GGWCC | 1 cut(s) | 277 |
| Eco57I | CTGAAG | 3 cut(s) | 242, 350, 911 |
| Eco81I | CCTNAGG | 1 cut(s) | 68 |
| Eco88I | CYCGRG | 1 cut(s) | 329 |
| EcoO109I | RGGNCCY | 1 cut(s) | 277 |
| EcoRII | CCWGG | 2 cut(s) | 905, 933 |
| EcoRV | GATATC | 1 cut(s) | 196 |
| EcoT14I | CCWWGG | 1 cut(s) | 846 |
| EcoT22I | ATGCAT | 1 cut(s) | 608 |
| EcoT38I | GRGCYC | 1 cut(s) | 24 |
| ErhI | CCWWGG | 1 cut(s) | 846 |
| FaeI | CATG | 4 cut(s) | 89, 457, 515, 652 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 839, 871 |
| FaqI | GGGAC | 2 cut(s) | 488, 916 |
| FatI | CATG | 4 cut(s) | 85, 453, 511, 648 |
| FauNDI | CATATG | 1 cut(s) | 348 |
| FbaI | TGATCA | 3 cut(s) | 460, 514, 802 |
| Fnu4HI | GCNGC | 7 cut(s) | 43, 145, 165, 319, 491, 725, 794 |
| FokI | GGATG | 5 cut(s) | 299, 402, 635, 640, 952 |
| FriOI | GRGCYC | 1 cut(s) | 24 |
| Fsp4HI | GCNGC | 7 cut(s) | 43, 145, 165, 319, 491, 725, 794 |
| GlaI | GCGC | 1 cut(s) | 245 |
| GluI | GCNGC | 7 cut(s) | 43, 145, 165, 319, 491, 725, 794 |
| HaeIII | GGCC | 4 cut(s) | 73, 326, 406, 531 |
| HapII | CCGG | 3 cut(s) | 177, 217, 680 |
| HhaI | GCGC | 1 cut(s) | 246 |
| Hin1II | CATG | 4 cut(s) | 89, 457, 515, 652 |
| Hin6I | GCGC | 1 cut(s) | 244 |
| HinP1I | GCGC | 1 cut(s) | 244 |
| HincII | GTYRAC | 1 cut(s) | 541 |
| HindII | GTYRAC | 1 cut(s) | 541 |
| HinfI | GANTC | 3 cut(s) | 93, 686, 911 |
| HpaI | GTTAAC | 1 cut(s) | 541 |
| HpaII | CCGG | 3 cut(s) | 177, 217, 680 |
| Hpy166II | GTNNAC | 2 cut(s) | 541, 685 |
| Hpy188I | TCNGA | 6 cut(s) | 100, 295, 369, 483, 519, 807 |
| Hpy188III | TCNNGA | 7 cut(s) | 199, 275, 439, 512, 584, 703, 947 |
| Hpy8I | GTNNAC | 2 cut(s) | 541, 685 |
| HpyAV | CCTTC | 4 cut(s) | 234, 374, 430, 670 |
| HpyCH4III | ACNGT | 3 cut(s) | 402, 445, 523 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 241, 308, 412 |
| HpyF3I | CTNAG | 3 cut(s) | 50, 68, 97 |
| Hsp92II | CATG | 4 cut(s) | 89, 457, 515, 652 |
| HspAI | GCGC | 1 cut(s) | 244 |
| Ksp22I | TGATCA | 3 cut(s) | 460, 514, 802 |
| KspAI | GTTAAC | 1 cut(s) | 541 |
| Kzo9I | GATC | 5 cut(s) | 435, 460, 514, 717, 802 |
| Lsp1109I | GCAGC | 7 cut(s) | 29, 156, 176, 330, 502, 736, 805 |
| LweI | GCATC | 6 cut(s) | 277, 289, 424, 477, 615, 902 |
| MalI | GATC | 5 cut(s) | 437, 462, 516, 719, 804 |
| MboI | GATC | 5 cut(s) | 435, 460, 514, 717, 802 |
| MboII | GAAGA | 7 cut(s) | 113, 116, 119, 192, 235, 238, 917 |
| MfeI | CAATTG | 1 cut(s) | 170 |
| MhlI | GDGCHC | 1 cut(s) | 24 |
| MluCI | AATT | 8 cut(s) | 12, 159, 170, 579, 599, 733, 815, 956 |
| MlyI | GAGTC | 1 cut(s) | 680 |
| MmeI | TCCRAC | 1 cut(s) | 609 |
| MnlI | CCTC | 7 cut(s) | 63, 137, 290, 301, 338, 489, 667 |
| Mph1103I | ATGCAT | 1 cut(s) | 608 |
| MroXI | GAANNNNTTC | 1 cut(s) | 374 |
| MseI | TTAA | 6 cut(s) | 11, 314, 540, 732, 765, 857 |
| MspI | CCGG | 3 cut(s) | 177, 217, 680 |
| MspR9I | CCNGG | 4 cut(s) | 177, 217, 907, 935 |
| MunI | CAATTG | 1 cut(s) | 170 |
| MvaI | CCWGG | 2 cut(s) | 907, 935 |
| MvnI | CGCG | 1 cut(s) | 704 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 241, 308, 412 |
| NciI | CCSGG | 2 cut(s) | 177, 217 |
| NdeI | CATATG | 1 cut(s) | 348 |
| NdeII | GATC | 5 cut(s) | 435, 460, 514, 717, 802 |
| NlaIII | CATG | 4 cut(s) | 89, 457, 515, 652 |
| NmeAIII | GCCGAG | 1 cut(s) | 302 |
| NruI | TCGCGA | 1 cut(s) | 704 |
| NsiI | ATGCAT | 1 cut(s) | 608 |
| NspI | RCATGY | 1 cut(s) | 652 |
| PaeR7I | CTCGAG | 1 cut(s) | 329 |
| PagI | TCATGA | 1 cut(s) | 511 |
| PaqCI | CACCTGC | 1 cut(s) | 138 |
| PasI | CCCWGGG | 1 cut(s) | 934 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 708 |
| PdmI | GAANNNNTTC | 1 cut(s) | 374 |
| PfeI | GAWTC | 2 cut(s) | 93, 911 |
| PkrI | GCNGC | 7 cut(s) | 44, 146, 166, 320, 492, 726, 795 |
| PleI | GAGTC | 1 cut(s) | 680 |
| PpsI | GAGTC | 1 cut(s) | 680 |
| PpuMI | RGGWCCY | 1 cut(s) | 277 |
| PsiI | TTATAA | 1 cut(s) | 966 |
| Psp5II | RGGWCCY | 1 cut(s) | 277 |
| Psp6I | CCWGG | 2 cut(s) | 905, 933 |
| PspGI | CCWGG | 2 cut(s) | 905, 933 |
| PspPI | GGNCC | 4 cut(s) | 72, 277, 325, 405 |
| PspPPI | RGGWCCY | 1 cut(s) | 277 |
| PspXI | VCTCGAGB | 1 cut(s) | 329 |
| PstI | CTGCAG | 1 cut(s) | 47 |
| RruI | TCGCGA | 1 cut(s) | 704 |
| SaqAI | TTAA | 6 cut(s) | 11, 314, 540, 732, 765, 857 |
| SatI | GCNGC | 7 cut(s) | 43, 145, 165, 319, 491, 725, 794 |
| Sau3AI | GATC | 5 cut(s) | 435, 460, 514, 717, 802 |
| Sau96I | GGNCC | 4 cut(s) | 72, 277, 325, 405 |
| SchI | GAGTC | 1 cut(s) | 680 |
| ScrFI | CCNGG | 4 cut(s) | 177, 217, 907, 935 |
| SduI | GDGCHC | 1 cut(s) | 24 |
| SfaNI | GCATC | 6 cut(s) | 277, 289, 424, 477, 615, 902 |
| SfcI | CTRYAG | 2 cut(s) | 43, 971 |
| Sfr274I | CTCGAG | 1 cut(s) | 329 |
| SinI | GGWCC | 1 cut(s) | 277 |
| SlaI | CTCGAG | 1 cut(s) | 329 |
| SmlI | CTYRAG | 2 cut(s) | 281, 329 |
| SmoI | CTYRAG | 2 cut(s) | 281, 329 |
| Sse9I | AATT | 8 cut(s) | 12, 159, 170, 579, 599, 733, 815, 956 |
| StyD4I | CCNGG | 4 cut(s) | 175, 215, 905, 933 |
| StyI | CCWWGG | 1 cut(s) | 846 |
| TaaI | ACNGT | 3 cut(s) | 402, 445, 523 |
| TaqI | TCGA | 5 cut(s) | 330, 720, 737, 756, 879 |
| TasI | AATT | 8 cut(s) | 12, 159, 170, 579, 599, 733, 815, 956 |
| TfiI | GAWTC | 2 cut(s) | 93, 911 |
| Tru1I | TTAA | 6 cut(s) | 11, 314, 540, 732, 765, 857 |
| Tru9I | TTAA | 6 cut(s) | 11, 314, 540, 732, 765, 857 |
| TscAI | CASTG | 2 cut(s) | 405, 528 |
| TseI | GCWGC | 7 cut(s) | 42, 144, 164, 318, 490, 724, 793 |
| TspDTI | ATGAA | 5 cut(s) | 20, 335, 470, 652, 851 |
| TspRI | CASTG | 2 cut(s) | 405, 528 |
| VpaK11BI | GGWCC | 1 cut(s) | 277 |
| XapI | RAATTY | 1 cut(s) | 815 |
| XceI | RCATGY | 1 cut(s) | 652 |
| XhoI | CTCGAG | 1 cut(s) | 329 |
| XmnI | GAANNNNTTC | 1 cut(s) | 374 |
| Zsp2I | ATGCAT | 1 cut(s) | 608 |