transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G57620 |
| fragaria_vesca | FvH4_4g09030 |
| malus_domestica | MD13G1266500.v1.1 MD16G1266600.v1.1 |
| prunus_persica | Prupe.1G089700_v2.0.a1 |
| pyrus_communis | pycom13g22950 pycom16g23540 |
| rosa_chinensis | RchiOBHm_Chr4g0403351 |
| rosa_laevigata | RLG00000008981 |
| rosa_multiflora | Rmu_sc0000381.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00347990 |
| rosa_rugosa | Rorug04G0041600 |
| rosa_samantha | Rh4AG118500 Rh4BG111100 Rh4CG125900 Rh4DG111200 |
| rosa_wichuraiana | Rw4G009620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 24 |
| AccI | GTMKAC | 1 cut(s) | 381 |
| AccII | CGCG | 1 cut(s) | 59 |
| AccIII | TCCGGA | 1 cut(s) | 359 |
| AciI | CCGC | 4 cut(s) | 52, 240, 260, 392 |
| AclWI | GGATC | 2 cut(s) | 153, 406 |
| AcoI | YGGCCR | 1 cut(s) | 261 |
| AgsI | TTSAA | 1 cut(s) | 227 |
| AluBI | AGCT | 1 cut(s) | 133 |
| AluI | AGCT | 1 cut(s) | 133 |
| Alw26I | GTCTC | 1 cut(s) | 361 |
| AlwI | GGATC | 2 cut(s) | 153, 406 |
| Aor13HI | TCCGGA | 1 cut(s) | 359 |
| AoxI | GGCC | 1 cut(s) | 261 |
| ApeKI | GCWGC | 2 cut(s) | 48, 84 |
| AspLEI | GCGC | 2 cut(s) | 25, 61 |
| BauI | CACGAG | 1 cut(s) | 89 |
| BbsI | GAAGAC | 1 cut(s) | 329 |
| BbvI | GCAGC | 2 cut(s) | 35, 71 |
| BccI | CCATC | 4 cut(s) | 89, 230, 260, 290 |
| BcoDI | GTCTC | 1 cut(s) | 361 |
| BisI | GCNGC | 4 cut(s) | 49, 52, 85, 261 |
| BlsI | GCNGC | 4 cut(s) | 50, 53, 86, 262 |
| BmiI | GGNNCC | 1 cut(s) | 292 |
| BmrI | ACTGGG | 1 cut(s) | 394 |
| BmuI | ACTGGG | 1 cut(s) | 394 |
| BpiI | GAAGAC | 1 cut(s) | 329 |
| BpmI | CTGGAG | 1 cut(s) | 83 |
| BsaWI | WCCGGW | 2 cut(s) | 124, 359 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 264, 294 |
| Bse1I | ACTGG | 1 cut(s) | 389 |
| BseAI | TCCGGA | 1 cut(s) | 359 |
| BseGI | GGATG | 1 cut(s) | 100 |
| BseNI | ACTGG | 1 cut(s) | 389 |
| BseRI | GAGGAG | 2 cut(s) | 258, 285 |
| BseX3I | CGGCCG | 1 cut(s) | 261 |
| BseXI | GCAGC | 2 cut(s) | 35, 71 |
| Bsh1236I | CGCG | 1 cut(s) | 59 |
| Bsh1285I | CGRYCG | 1 cut(s) | 264 |
| BshFI | GGCC | 1 cut(s) | 263 |
| BsiEI | CGRYCG | 1 cut(s) | 264 |
| BsiSI | CCGG | 2 cut(s) | 125, 360 |
| BsmAI | GTCTC | 1 cut(s) | 361 |
| BsnI | GGCC | 1 cut(s) | 263 |
| Bsp13I | TCCGGA | 1 cut(s) | 359 |
| Bsp143I | GATC | 2 cut(s) | 145, 398 |
| BspACI | CCGC | 4 cut(s) | 52, 240, 260, 392 |
| BspANI | GGCC | 1 cut(s) | 263 |
| BspEI | TCCGGA | 1 cut(s) | 359 |
| BspFNI | CGCG | 1 cut(s) | 59 |
| BspLI | GGNNCC | 1 cut(s) | 292 |
| BspPI | GGATC | 2 cut(s) | 153, 406 |
| BsrI | ACTGG | 1 cut(s) | 389 |
| BssMI | GATC | 2 cut(s) | 145, 398 |
| BssSI | CACGAG | 1 cut(s) | 89 |
| Bst2BI | CACGAG | 1 cut(s) | 89 |
| BstF5I | GGATG | 1 cut(s) | 100 |
| BstFNI | CGCG | 1 cut(s) | 59 |
| BstHHI | GCGC | 2 cut(s) | 25, 61 |
| BstKTI | GATC | 2 cut(s) | 148, 401 |
| BstMAI | GTCTC | 1 cut(s) | 361 |
| BstMBI | GATC | 2 cut(s) | 145, 398 |
| BstMCI | CGRYCG | 1 cut(s) | 264 |
| BstUI | CGCG | 1 cut(s) | 59 |
| BstV1I | GCAGC | 2 cut(s) | 35, 71 |
| BstV2I | GAAGAC | 1 cut(s) | 329 |
| BstX2I | RGATCY | 1 cut(s) | 145 |
| BstYI | RGATCY | 1 cut(s) | 145 |
| BstZI | CGGCCG | 1 cut(s) | 261 |
| BsuRI | GGCC | 1 cut(s) | 263 |
| BtsCI | GGATG | 1 cut(s) | 100 |
| CfoI | GCGC | 2 cut(s) | 25, 61 |
| CviAII | CATG | 1 cut(s) | 20 |
| CviJI | RGCY | 5 cut(s) | 84, 133, 263, 293, 368 |
| CviKI_1 | RGCY | 5 cut(s) | 84, 133, 263, 293, 368 |
| DpnI | GATC | 2 cut(s) | 147, 400 |
| DpnII | GATC | 2 cut(s) | 145, 398 |
| EaeI | YGGCCR | 1 cut(s) | 261 |
| EagI | CGGCCG | 1 cut(s) | 261 |
| EciI | GGCGGA | 1 cut(s) | 255 |
| EclXI | CGGCCG | 1 cut(s) | 261 |
| Eco52I | CGGCCG | 1 cut(s) | 261 |
| FaeI | CATG | 1 cut(s) | 23 |
| FaiI | YATR | 4 cut(s) | 21, 36, 232, 234 |
| FatI | CATG | 1 cut(s) | 19 |
| FauI | CCCGC | 1 cut(s) | 385 |
| FauNDI | CATATG | 1 cut(s) | 232 |
| FblI | GTMKAC | 1 cut(s) | 381 |
| Fnu4HI | GCNGC | 4 cut(s) | 49, 52, 85, 261 |
| FokI | GGATG | 1 cut(s) | 107 |
| Fsp4HI | GCNGC | 4 cut(s) | 49, 52, 85, 261 |
| FspAI | RTGCGCAY | 1 cut(s) | 24 |
| FspI | TGCGCA | 1 cut(s) | 24 |
| GlaI | GCGC | 2 cut(s) | 24, 60 |
| GluI | GCNGC | 4 cut(s) | 49, 52, 85, 261 |
| GsuI | CTGGAG | 1 cut(s) | 83 |
| HaeIII | GGCC | 1 cut(s) | 263 |
| HapII | CCGG | 2 cut(s) | 125, 360 |
| HhaI | GCGC | 2 cut(s) | 25, 61 |
| Hin1II | CATG | 1 cut(s) | 23 |
| Hin6I | GCGC | 2 cut(s) | 23, 59 |
| HinP1I | GCGC | 2 cut(s) | 23, 59 |
| HinfI | GANTC | 4 cut(s) | 137, 227, 246, 354 |
| HpaII | CCGG | 2 cut(s) | 125, 360 |
| Hpy166II | GTNNAC | 3 cut(s) | 106, 317, 382 |
| Hpy188I | TCNGA | 1 cut(s) | 156 |
| Hpy188III | TCNNGA | 2 cut(s) | 73, 360 |
| Hpy8I | GTNNAC | 3 cut(s) | 106, 317, 382 |
| HpyAV | CCTTC | 2 cut(s) | 131, 280 |
| HpyCH4IV | ACGT | 1 cut(s) | 375 |
| HpySE526I | ACGT | 1 cut(s) | 375 |
| Hsp92II | CATG | 1 cut(s) | 23 |
| HspAI | GCGC | 2 cut(s) | 23, 59 |
| Kpn2I | TCCGGA | 1 cut(s) | 359 |
| Kzo9I | GATC | 2 cut(s) | 145, 398 |
| LmnI | GCTCC | 1 cut(s) | 290 |
| LpnPI | CCDG | 6 cut(s) | 47, 127, 128, 138, 370, 373 |
| Lsp1109I | GCAGC | 2 cut(s) | 35, 71 |
| MaeII | ACGT | 1 cut(s) | 375 |
| MalI | GATC | 2 cut(s) | 147, 400 |
| MboI | GATC | 2 cut(s) | 145, 398 |
| MboII | GAAGA | 3 cut(s) | 22, 88, 329 |
| MfeI | CAATTG | 1 cut(s) | 198 |
| MflI | RGATCY | 1 cut(s) | 145 |
| MluCI | AATT | 2 cut(s) | 198, 204 |
| MlyI | GAGTC | 2 cut(s) | 255, 363 |
| MnlI | CCTC | 9 cut(s) | 50, 58, 98, 119, 236, 244, 263, 298, 356 |
| MroI | TCCGGA | 1 cut(s) | 359 |
| MslI | CAYNNNNRTG | 1 cut(s) | 18 |
| MspI | CCGG | 2 cut(s) | 125, 360 |
| MunI | CAATTG | 1 cut(s) | 198 |
| MvnI | CGCG | 1 cut(s) | 59 |
| NdeI | CATATG | 1 cut(s) | 232 |
| NdeII | GATC | 2 cut(s) | 145, 398 |
| NlaIII | CATG | 1 cut(s) | 23 |
| NlaIV | GGNNCC | 1 cut(s) | 292 |
| NsbI | TGCGCA | 1 cut(s) | 24 |
| PfeI | GAWTC | 2 cut(s) | 137, 227 |
| PkrI | GCNGC | 4 cut(s) | 50, 53, 86, 262 |
| PleI | GAGTC | 2 cut(s) | 254, 362 |
| PpsI | GAGTC | 2 cut(s) | 254, 362 |
| PspN4I | GGNNCC | 1 cut(s) | 292 |
| PsuI | RGATCY | 1 cut(s) | 145 |
| RseI | CAYNNNNRTG | 1 cut(s) | 18 |
| SatI | GCNGC | 4 cut(s) | 49, 52, 85, 261 |
| Sau3AI | GATC | 2 cut(s) | 145, 398 |
| SchI | GAGTC | 2 cut(s) | 255, 363 |
| SetI | ASST | 6 cut(s) | 42, 69, 111, 123, 135, 378 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 18 |
| Sse9I | AATT | 2 cut(s) | 198, 204 |
| SsiI | CCGC | 4 cut(s) | 52, 240, 260, 392 |
| TaiI | ACGT | 1 cut(s) | 378 |
| TaqI | TCGA | 2 cut(s) | 135, 249 |
| TasI | AATT | 2 cut(s) | 198, 204 |
| TauI | GCSGC | 2 cut(s) | 54, 263 |
| TfiI | GAWTC | 2 cut(s) | 137, 227 |
| TseI | GCWGC | 2 cut(s) | 48, 84 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XmiI | GTMKAC | 1 cut(s) | 381 |