MD16G1266600.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
34033286 .. 34035126
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1266600.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGGGACGAGCTCCATGCTGTGACAAGGCCAACGTCAAGAAGGGACCATGGTCACCTGAAGAGGATGCAAGACTTAAGGCCTATATTGAAGAGCATGGTACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAAAGATGTGGAAAAAGTTGCAGGCTGAGATGGCTCAACTACTTGAGGCCCAACATCAAGCATGGTGGATTCTCAGAAGAAGAAGACAAGACCATCTGCAGCCTCTATATAAGTATTGGCAGCAGGTGGTCTATAATTGCTGCCCAATTGCCTGGAAGAACTGATAATGATATAAAGAACTACTGGAACACCCGATTGAAGAAAAAGTTACTTGGAAGGCGCAAACAGTCCAATATCAATCGATCTCCGTCTGATCAGAGTCAGGATCACCAGCTCAAGGACGCTGGCGACACACAAGCCTTAAGCAGTTCAGCCCTTGAAAGACTTCAACTCCATATGCAGCTTCAAAGCCTTCAGAACCCTTTTTCTTTCCATAATAATCCTGCACTGTGGCCCAAGTTGCACCCTTTGCAAGAAAAGATGATACAGACCCTCCGTTCCATGAATGATAATAACCCTATGATGCACCACCGTGCTCTCACAAGTCCTCTTCAACCAGCTCAAAAGCAAAAGGGTAATATCAATGATGTCTATGAACAAGTGCAGCCCACTTCTGCCTCTATCTTAATTCAACAAGAATTTTCAAAATTATGCAATCACAAAAATATGGATGAACTGGAGAATCCTTTGAATGGCATGGCATACTCAGACGCCCCCTGTCGTGCTTTCATCTCCACAAGTAATCAAGTGGACTCAACTATTGTGGCGGCAAAAGCCGATGGTGTAGAGCAGTTAAACAGTGTCGGAACTCATGATCATCGTCACCAGGTTAATTCGAGCTTCCAAGGTGAATTTGGTGATGTTGTTAATAATAAATGTTTTGGTCTCGCAGCACAACAGGAAGATGGTCAAATAGCTGAATTTGATTGTTTCAAAGACATCAATGTCTCCAAGGACAGCTTGGAGTGGTGGGCTAACGAGTTTGACGCAAAATCTGCCTCTTCAAACTCCTGGGATTCTACTTCTGTTCTTCACTCCCAAGGAATGTTTCAAGACTATGAATTAGGTTACAACATGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

387

Amino Acids

43.58

Weight (kDa)

6.89

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 1.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 8e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 1.1e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 139 2.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57620
fragaria_vesca FvH4_4g09030
malus_domestica MD13G1266500.v1.1 MD16G1266600.v1.1
prunus_persica Prupe.1G089700_v2.0.a1
pyrus_communis pycom13g22950 pycom16g23540
rosa_chinensis RchiOBHm_Chr4g0403351
rosa_laevigata RLG00000008981
rosa_multiflora Rmu_sc0000381.1_g000013
rosa_roxburghii Rroxscaffold_5G00347990
rosa_rugosa Rorug04G0041600
rosa_samantha Rh4AG118500 Rh4BG111100 Rh4CG125900 Rh4DG111200
rosa_wichuraiana Rw4G009620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
AasI GACNNNNNNGTC 1 cut(s) 1025
Acc36I ACCTGC 1 cut(s) 255
AciI CCGC 1 cut(s) 848
AclWI GGATC 1 cut(s) 414
AcsI RAATTY 3 cut(s) 719, 932, 1001
AcuI CTGAAG 2 cut(s) 78, 479
AcyI GRCGYC 1 cut(s) 792
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 418, 773
AflII CTTAAG 2 cut(s) 74, 442
AflIII ACRYGT 1 cut(s) 1155
AjnI CCWGG 3 cut(s) 292, 906, 1091
AjuI GAANNNNNNNTTGG 2 cut(s) 1113, 1145
AleI CACNNNNGTG 1 cut(s) 612
AluBI AGCT 7 cut(s) 11, 415, 484, 641, 921, 998, 1041
AluI AGCT 7 cut(s) 11, 415, 484, 641, 921, 998, 1041
Alw21I GWGCWC 2 cut(s) 13, 619
Alw26I GTCTC 2 cut(s) 971, 1033
AlwI GGATC 1 cut(s) 414
AoxI GGCC 4 cut(s) 27, 78, 188, 533
ApeKI GCWGC 6 cut(s) 240, 261, 281, 481, 685, 971
ApoI RAATTY 3 cut(s) 719, 932, 1001
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 3 cut(s) 44, 189, 534
AsuHPI GGTGA 5 cut(s) 45, 401, 896, 941, 950
AvaII GGWCC 1 cut(s) 44
BanII GRGCYC 2 cut(s) 13, 141
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 13, 619
BbvI GCAGC 6 cut(s) 252, 268, 273, 493, 697, 983
BccI CCATC 4 cut(s) 165, 242, 854, 980
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 3 cut(s) 294, 908, 1093
BclI TGATCA 2 cut(s) 394, 895
BcoDI GTCTC 2 cut(s) 971, 1033
BfmI CTRYAG 1 cut(s) 238
BfrI CTTAAG 2 cut(s) 74, 442
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 7 cut(s) 241, 262, 282, 482, 686, 849, 972
BlsI GCNGC 7 cut(s) 242, 263, 283, 483, 687, 850, 973
Bme1390I CCNGG 3 cut(s) 294, 908, 1093
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 44, 189, 534
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 3 cut(s) 294, 908, 1093
BmsI GCATC 2 cut(s) 55, 594
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 779
BpuEI CTTGAG 2 cut(s) 205, 401
Bsa29I ATCGAT 1 cut(s) 382
BsaHI GRCGYC 1 cut(s) 792
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 5 cut(s) 47, 925, 1032, 1092, 1120
BsaXI ACNNNNNCTCC 4 cut(s) 456, 486, 558, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 773
Bse1I ACTGG 3 cut(s) 106, 329, 762
BseBI CCWGG 3 cut(s) 294, 908, 1093
BseCI ATCGAT 1 cut(s) 382
BseDI CCNNGG 5 cut(s) 47, 925, 1032, 1092, 1120
BseGI GGATG 2 cut(s) 70, 757
BseLI CCNNNNNNNGG 2 cut(s) 418, 773
BseMII CTCAG 4 cut(s) 140, 158, 228, 801
BseNI ACTGG 3 cut(s) 106, 329, 762
BseXI GCAGC 6 cut(s) 252, 268, 273, 493, 697, 983
BsgI GTGCAG 2 cut(s) 510, 704
BshFI GGCC 4 cut(s) 29, 80, 190, 535
BshVI ATCGAT 1 cut(s) 382
BsiHKAI GWGCWC 2 cut(s) 13, 619
BslFI GGGAC 2 cut(s) 18, 57
BslI CCNNNNNNNGG 2 cut(s) 418, 773
BsmAI GTCTC 2 cut(s) 971, 1033
BsmFI GGGAC 2 cut(s) 18, 57
BsnI GGCC 4 cut(s) 29, 80, 190, 535
Bso31I GGTCTC 1 cut(s) 971
Bsp1286I GDGCHC 3 cut(s) 13, 141, 619
Bsp143I GATC 4 cut(s) 383, 394, 406, 895
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 848
BspANI GGCC 4 cut(s) 29, 80, 190, 535
BspCNI CTCAG 4 cut(s) 139, 159, 227, 800
BspDI ATCGAT 1 cut(s) 382
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 414
BspQI GCTCTTC 2 cut(s) 84, 126
BspTI CTTAAG 2 cut(s) 74, 442
BspTNI GGTCTC 1 cut(s) 971
BsrI ACTGG 3 cut(s) 106, 329, 762
BssECI CCNNGG 5 cut(s) 47, 925, 1032, 1092, 1120
BssMI GATC 4 cut(s) 383, 394, 406, 895
BssNI GRCGYC 1 cut(s) 792
BssT1I CCWWGG 4 cut(s) 47, 925, 1032, 1120
Bst2UI CCWGG 3 cut(s) 294, 908, 1093
Bst4CI ACNGT 4 cut(s) 369, 531, 614, 881
Bst6I CTCTTC 5 cut(s) 54, 84, 126, 636, 1087
BstACI GRCGYC 1 cut(s) 792
BstAFI CTTAAG 2 cut(s) 74, 442
BstAPI GCANNNNNTGC 2 cut(s) 550, 1076
BstC8I GCNNGC 2 cut(s) 164, 427
BstDEI CTNAG 4 cut(s) 126, 167, 214, 787
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 2 cut(s) 70, 757
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 4 cut(s) 386, 397, 409, 898
BstMAI GTCTC 2 cut(s) 971, 1033
BstMBI GATC 4 cut(s) 383, 394, 406, 895
BstMWI GCNNNNNNNGC 5 cut(s) 172, 541, 550, 854, 1076
BstNI CCWGG 3 cut(s) 294, 908, 1093
BstNSI RCATGY 1 cut(s) 1159
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 3 cut(s) 292, 906, 1091
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 6 cut(s) 252, 268, 273, 493, 697, 983
BstV2I GAAGAC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 382
BsuRI GGCC 4 cut(s) 29, 80, 190, 535
BsuTUI ATCGAT 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 70, 757
BtsIMutI CAGTG 2 cut(s) 527, 886
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 164, 427
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 3 cut(s) 44, 189, 534
ClaI ATCGAT 1 cut(s) 382
CseI GACGC 3 cut(s) 431, 800, 1076
CsiI ACCWGGT 1 cut(s) 906
Csp6I GTAC 1 cut(s) 99
CspCI CAANNNNNGTGG 6 cut(s) 130, 165, 187, 222, 825, 860
CviAII CATG 8 cut(s) 15, 48, 95, 203, 583, 778, 893, 1156
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 4 cut(s) 126, 167, 214, 787
DpnI GATC 4 cut(s) 385, 396, 408, 897
DpnII GATC 4 cut(s) 383, 394, 406, 895
DrdI GACNNNNNNGTC 1 cut(s) 1025
DseDI GACNNNNNNGTC 1 cut(s) 1025
Eam1104I CTCTTC 5 cut(s) 54, 84, 126, 636, 1087
EarI CTCTTC 5 cut(s) 54, 84, 126, 636, 1087
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 4 cut(s) 47, 925, 1032, 1120
Eco147I AGGCCT 1 cut(s) 80
Eco24I GRGCYC 2 cut(s) 13, 141
Eco31I GGTCTC 1 cut(s) 971
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 78, 479
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 3 cut(s) 292, 906, 1091
EcoT14I CCWWGG 4 cut(s) 47, 925, 1032, 1120
EcoT38I GRGCYC 2 cut(s) 13, 141
ErhI CCWWGG 4 cut(s) 47, 925, 1032, 1120
FaeI CATG 8 cut(s) 18, 51, 98, 206, 586, 781, 896, 1159
FalI AAGNNNNNCTT 2 cut(s) 1025, 1057
FaqI GGGAC 2 cut(s) 18, 57
FatI CATG 8 cut(s) 14, 47, 94, 202, 582, 777, 892, 1155
FauNDI CATATG 1 cut(s) 477
FbaI TGATCA 2 cut(s) 394, 895
Fnu4HI GCNGC 7 cut(s) 241, 262, 282, 482, 686, 849, 972
FokI GGATG 2 cut(s) 77, 764
FriOI GRGCYC 2 cut(s) 13, 141
Fsp4HI GCNGC 7 cut(s) 241, 262, 282, 482, 686, 849, 972
GlaI GCGC 1 cut(s) 362
GluI GCNGC 7 cut(s) 241, 262, 282, 482, 686, 849, 972
GsuI CTGGAG 1 cut(s) 779
HaeIII GGCC 4 cut(s) 29, 80, 190, 535
HgaI GACGC 3 cut(s) 431, 800, 1076
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 792
Hin1II CATG 8 cut(s) 18, 51, 98, 206, 586, 781, 896, 1159
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 5 cut(s) 210, 400, 763, 833, 1097
HphI GGTGA 5 cut(s) 45, 401, 896, 941, 950
Hpy166II GTNNAC 1 cut(s) 832
Hpy188I TCNGA 7 cut(s) 129, 217, 394, 399, 498, 790, 887
Hpy188III TCNNGA 4 cut(s) 37, 404, 893, 1133
Hpy8I GTNNAC 1 cut(s) 832
HpyAV CCTTC 3 cut(s) 34, 351, 503
HpyCH4III ACNGT 4 cut(s) 369, 531, 614, 881
HpyCH4IV ACGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 541, 550, 854, 1076
HpyF3I CTNAG 4 cut(s) 126, 167, 214, 787
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 792
Hsp92II CATG 8 cut(s) 18, 51, 98, 206, 586, 781, 896, 1159
HspAI GCGC 1 cut(s) 361
Ksp22I TGATCA 2 cut(s) 394, 895
Kzo9I GATC 4 cut(s) 383, 394, 406, 895
LguI GCTCTTC 2 cut(s) 84, 126
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 6 cut(s) 252, 268, 273, 493, 697, 983
LweI GCATC 2 cut(s) 55, 594
MabI ACCWGGT 1 cut(s) 906
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 5 cut(s) 20, 51, 348, 902, 1148
MalI GATC 4 cut(s) 385, 396, 408, 897
MboI GATC 4 cut(s) 383, 394, 406, 895
MfeI CAATTG 2 cut(s) 109, 287
MhlI GDGCHC 3 cut(s) 13, 141, 619
MlyI GAGTC 2 cut(s) 409, 827
MmeI TCCRAC 1 cut(s) 865
MnlI CCTC 8 cut(s) 55, 135, 180, 254, 584, 639, 709, 1090
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 6 cut(s) 75, 443, 707, 875, 912, 948
MslI CAYNNNNRTG 1 cut(s) 612
MspCI CTTAAG 2 cut(s) 74, 442
MspR9I CCNGG 3 cut(s) 294, 908, 1093
MunI CAATTG 2 cut(s) 109, 287
MvaI CCWGG 3 cut(s) 294, 908, 1093
MwoI GCNNNNNNNGC 5 cut(s) 172, 541, 550, 854, 1076
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 477
NdeII GATC 4 cut(s) 383, 394, 406, 895
NlaIII CATG 8 cut(s) 18, 51, 98, 206, 586, 781, 896, 1159
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 3 cut(s) 20, 51, 902
NspI RCATGY 1 cut(s) 1159
OliI CACNNNNGTG 1 cut(s) 612
PagI TCATGA 1 cut(s) 892
PaqCI CACCTGC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 80
PciI ACATGT 1 cut(s) 1155
PciSI GCTCTTC 2 cut(s) 84, 126
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 3 cut(s) 210, 763, 1097
PkrI GCNGC 7 cut(s) 242, 263, 283, 483, 687, 850, 973
PleI GAGTC 2 cut(s) 408, 827
PpsI GAGTC 2 cut(s) 408, 827
PscI ACATGT 1 cut(s) 1155
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 292, 906, 1091
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 3 cut(s) 292, 906, 1091
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 3 cut(s) 44, 189, 534
PstI CTGCAG 1 cut(s) 242
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 612
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 2 cut(s) 84, 126
SaqAI TTAA 6 cut(s) 75, 443, 707, 875, 912, 948
SatI GCNGC 7 cut(s) 241, 262, 282, 482, 686, 849, 972
Sau3AI GATC 4 cut(s) 383, 394, 406, 895
Sau96I GGNCC 3 cut(s) 44, 189, 534
SchI GAGTC 2 cut(s) 409, 827
ScrFI CCNGG 3 cut(s) 294, 908, 1093
SduI GDGCHC 3 cut(s) 13, 141, 619
SexAI ACCWGGT 1 cut(s) 906
SfaNI GCATC 2 cut(s) 55, 594
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 4 cut(s) 74, 184, 416, 442
SmoI CTYRAG 4 cut(s) 74, 184, 416, 442
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 1 cut(s) 848
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 3 cut(s) 292, 906, 1091
StyI CCWWGG 4 cut(s) 47, 925, 1032, 1120
TaaI ACNGT 4 cut(s) 369, 531, 614, 881
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 382, 917
TauI GCSGC 1 cut(s) 851
TfiI GAWTC 3 cut(s) 210, 763, 1097
Tru1I TTAA 6 cut(s) 75, 443, 707, 875, 912, 948
Tru9I TTAA 6 cut(s) 75, 443, 707, 875, 912, 948
TscAI CASTG 2 cut(s) 534, 886
TseFI GTSAC 3 cut(s) 20, 51, 902
TseI GCWGC 6 cut(s) 240, 261, 281, 481, 685, 971
Tsp45I GTSAC 3 cut(s) 20, 51, 902
TspDTI ATGAA 5 cut(s) 599, 690, 768, 799, 1155
TspGWI ACGGA 2 cut(s) 378, 566
TspRI CASTG 2 cut(s) 534, 886
Vha464I CTTAAG 2 cut(s) 74, 442
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 3 cut(s) 719, 932, 1001
XceI RCATGY 1 cut(s) 1159
XcmI CCANNNNNNNNNTGG 2 cut(s) 932, 1039
XmnI GAANNNNTTC 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.