transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G57620 |
| fragaria_vesca | FvH4_4g09030 |
| malus_domestica | MD13G1266500.v1.1 MD16G1266600.v1.1 |
| prunus_persica | Prupe.1G089700_v2.0.a1 |
| pyrus_communis | pycom13g22950 pycom16g23540 |
| rosa_chinensis | RchiOBHm_Chr4g0403351 |
| rosa_laevigata | RLG00000008981 |
| rosa_multiflora | Rmu_sc0000381.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00347990 |
| rosa_rugosa | Rorug04G0041600 |
| rosa_samantha | Rh4AG118500 Rh4BG111100 Rh4CG125900 Rh4DG111200 |
| rosa_wichuraiana | Rw4G009620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1083 |
| AarI | CACCTGC | 1 cut(s) | 255 |
| Acc36I | ACCTGC | 2 cut(s) | 255, 835 |
| AccII | CGCG | 1 cut(s) | 821 |
| AclWI | GGATC | 1 cut(s) | 547 |
| AcsI | RAATTY | 1 cut(s) | 932 |
| AcuI | CTGAAG | 5 cut(s) | 78, 95, 359, 467, 1028 |
| AgsI | TTSAA | 7 cut(s) | 89, 458, 701, 760, 932, 946, 1064 |
| AjnI | CCWGG | 2 cut(s) | 1022, 1050 |
| AluBI | AGCT | 6 cut(s) | 11, 159, 438, 858, 866, 972 |
| AluI | AGCT | 6 cut(s) | 11, 159, 438, 858, 866, 972 |
| Alw21I | GWGCWC | 1 cut(s) | 13 |
| Alw26I | GTCTC | 1 cut(s) | 964 |
| AlwI | GGATC | 1 cut(s) | 547 |
| Ama87I | CYCGRG | 1 cut(s) | 446 |
| AoxI | GGCC | 5 cut(s) | 78, 188, 441, 521, 646 |
| ApeKI | GCWGC | 8 cut(s) | 18, 159, 261, 281, 435, 607, 841, 910 |
| ApoI | RAATTY | 1 cut(s) | 932 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 491 |
| AspLEI | GCGC | 1 cut(s) | 363 |
| AspS9I | GGNCC | 5 cut(s) | 44, 189, 394, 442, 522 |
| AsuC2I | CCSGG | 2 cut(s) | 294, 334 |
| AsuHPI | GGTGA | 1 cut(s) | 45 |
| AvaI | CYCGRG | 1 cut(s) | 446 |
| AvaII | GGWCC | 2 cut(s) | 44, 394 |
| AxyI | CCTNAGG | 1 cut(s) | 185 |
| BanII | GRGCYC | 2 cut(s) | 13, 141 |
| BbsI | GAAGAC | 1 cut(s) | 231 |
| Bbv12I | GWGCWC | 1 cut(s) | 13 |
| BbvI | GCAGC | 8 cut(s) | 5, 146, 273, 293, 447, 619, 853, 922 |
| BccI | CCATC | 4 cut(s) | 165, 730, 869, 919 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 31 |
| BciT130I | CCWGG | 2 cut(s) | 1024, 1052 |
| BclI | TGATCA | 3 cut(s) | 577, 631, 919 |
| BcnI | CCSGG | 2 cut(s) | 294, 334 |
| BcoDI | GTCTC | 1 cut(s) | 964 |
| BfmI | CTRYAG | 2 cut(s) | 160, 1088 |
| BfuAI | ACCTGC | 2 cut(s) | 255, 835 |
| BisI | GCNGC | 8 cut(s) | 19, 160, 262, 282, 436, 608, 842, 911 |
| BlsI | GCNGC | 8 cut(s) | 20, 161, 263, 283, 437, 609, 843, 912 |
| Bme1390I | CCNGG | 4 cut(s) | 294, 334, 1024, 1052 |
| Bme18I | GGWCC | 2 cut(s) | 44, 394 |
| BmeT110I | CYCGRG | 1 cut(s) | 446 |
| BmgT120I | GGNCC | 5 cut(s) | 44, 189, 394, 442, 522 |
| BmiI | GGNNCC | 1 cut(s) | 45 |
| BmrFI | CCNGG | 4 cut(s) | 294, 334, 1024, 1052 |
| BmrI | ACTGGG | 1 cut(s) | 618 |
| BmsI | GCATC | 7 cut(s) | 55, 394, 406, 541, 594, 732, 1019 |
| BmuI | ACTGGG | 1 cut(s) | 618 |
| BoxI | GACNNNNGTC | 1 cut(s) | 49 |
| BpiI | GAAGAC | 1 cut(s) | 231 |
| BpmI | CTGGAG | 1 cut(s) | 123 |
| BpuEI | CTTGAG | 1 cut(s) | 383 |
| BpuMI | CCSGG | 2 cut(s) | 294, 334 |
| BsaBI | GATNNNNATC | 1 cut(s) | 420 |
| BsaJI | CCNNGG | 5 cut(s) | 47, 963, 1023, 1050, 1051 |
| BsaWI | WCCGGW | 1 cut(s) | 796 |
| Bse1I | ACTGG | 5 cut(s) | 106, 116, 329, 624, 688 |
| Bse21I | CCTNAGG | 1 cut(s) | 185 |
| Bse8I | GATNNNNATC | 1 cut(s) | 420 |
| BseBI | CCWGG | 2 cut(s) | 1024, 1052 |
| BseDI | CCNNGG | 5 cut(s) | 47, 963, 1023, 1050, 1051 |
| BseGI | GGATG | 6 cut(s) | 70, 409, 532, 745, 770, 1062 |
| BseJI | GATNNNNATC | 1 cut(s) | 420 |
| BseMII | CTCAG | 4 cut(s) | 140, 158, 176, 228 |
| BseNI | ACTGG | 5 cut(s) | 106, 116, 329, 624, 688 |
| BseXI | GCAGC | 8 cut(s) | 5, 146, 273, 293, 447, 619, 853, 922 |
| BsgI | GTGCAG | 1 cut(s) | 498 |
| Bsh1236I | CGCG | 1 cut(s) | 821 |
| BshFI | GGCC | 5 cut(s) | 80, 190, 443, 523, 648 |
| BsiHKAI | GWGCWC | 1 cut(s) | 13 |
| BsiHKCI | CYCGRG | 1 cut(s) | 446 |
| BsiSI | CCGG | 3 cut(s) | 294, 334, 797 |
| BslFI | GGGAC | 3 cut(s) | 57, 605, 1033 |
| BsmAI | GTCTC | 1 cut(s) | 964 |
| BsmFI | GGGAC | 3 cut(s) | 57, 605, 1033 |
| BsnI | GGCC | 5 cut(s) | 80, 190, 443, 523, 648 |
| BsoBI | CYCGRG | 1 cut(s) | 446 |
| Bsp1286I | GDGCHC | 2 cut(s) | 13, 141 |
| Bsp143I | GATC | 5 cut(s) | 552, 577, 631, 834, 919 |
| Bsp19I | CCATGG | 1 cut(s) | 47 |
| Bsp68I | TCGCGA | 1 cut(s) | 821 |
| BspANI | GGCC | 5 cut(s) | 80, 190, 443, 523, 648 |
| BspCNI | CTCAG | 4 cut(s) | 139, 159, 177, 227 |
| BspFNI | CGCG | 1 cut(s) | 821 |
| BspHI | TCATGA | 1 cut(s) | 628 |
| BspLI | GGNNCC | 1 cut(s) | 45 |
| BspMAI | CTGCAG | 1 cut(s) | 164 |
| BspMI | ACCTGC | 2 cut(s) | 255, 835 |
| BspPI | GGATC | 1 cut(s) | 547 |
| BspQI | GCTCTTC | 1 cut(s) | 84 |
| BsrI | ACTGG | 5 cut(s) | 106, 116, 329, 624, 688 |
| BssECI | CCNNGG | 5 cut(s) | 47, 963, 1023, 1050, 1051 |
| BssMI | GATC | 5 cut(s) | 552, 577, 631, 834, 919 |
| BssT1I | CCWWGG | 2 cut(s) | 47, 963 |
| Bst2UI | CCWGG | 2 cut(s) | 1024, 1052 |
| Bst4CI | ACNGT | 3 cut(s) | 519, 562, 640 |
| Bst6I | CTCTTC | 2 cut(s) | 54, 84 |
| BstC8I | GCNNGC | 1 cut(s) | 365 |
| BstDEI | CTNAG | 4 cut(s) | 126, 167, 185, 214 |
| BstDSI | CCRYGG | 1 cut(s) | 47 |
| BstEII | GGTNACC | 1 cut(s) | 51 |
| BstF5I | GGATG | 6 cut(s) | 70, 409, 532, 745, 770, 1062 |
| BstFNI | CGCG | 1 cut(s) | 821 |
| BstHHI | GCGC | 1 cut(s) | 363 |
| BstKTI | GATC | 5 cut(s) | 555, 580, 634, 837, 922 |
| BstMAI | GTCTC | 1 cut(s) | 964 |
| BstMBI | GATC | 5 cut(s) | 552, 577, 631, 834, 919 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 358, 425, 529 |
| BstNI | CCWGG | 2 cut(s) | 1024, 1052 |
| BstNSI | RCATGY | 1 cut(s) | 769 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 49 |
| BstPI | GGTNACC | 1 cut(s) | 51 |
| BstSCI | CCNGG | 4 cut(s) | 292, 332, 1022, 1050 |
| BstSFI | CTRYAG | 2 cut(s) | 160, 1088 |
| BstUI | CGCG | 1 cut(s) | 821 |
| BstV1I | GCAGC | 8 cut(s) | 5, 146, 273, 293, 447, 619, 853, 922 |
| BstV2I | GAAGAC | 1 cut(s) | 231 |
| Bsu36I | CCTNAGG | 1 cut(s) | 185 |
| BsuRI | GGCC | 5 cut(s) | 80, 190, 443, 523, 648 |
| BtgI | CCRYGG | 1 cut(s) | 47 |
| BtsCI | GGATG | 6 cut(s) | 70, 409, 532, 745, 770, 1062 |
| BtsIMutI | CAGTG | 3 cut(s) | 71, 515, 645 |
| BtuMI | TCGCGA | 1 cut(s) | 821 |
| BveI | ACCTGC | 2 cut(s) | 255, 835 |
| Cac8I | GCNNGC | 1 cut(s) | 365 |
| CciI | TCATGA | 1 cut(s) | 628 |
| CfoI | GCGC | 1 cut(s) | 363 |
| Cfr13I | GGNCC | 5 cut(s) | 44, 189, 394, 442, 522 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 130, 165, 187, 222 |
| CviAII | CATG | 6 cut(s) | 48, 95, 203, 571, 629, 766 |
| DdeI | CTNAG | 4 cut(s) | 126, 167, 185, 214 |
| DpnI | GATC | 5 cut(s) | 554, 579, 633, 836, 921 |
| DpnII | GATC | 5 cut(s) | 552, 577, 631, 834, 919 |
| Eam1104I | CTCTTC | 2 cut(s) | 54, 84 |
| EarI | CTCTTC | 2 cut(s) | 54, 84 |
| Ecl136II | GAGCTC | 1 cut(s) | 11 |
| Eco130I | CCWWGG | 2 cut(s) | 47, 963 |
| Eco147I | AGGCCT | 1 cut(s) | 80 |
| Eco24I | GRGCYC | 2 cut(s) | 13, 141 |
| Eco32I | GATATC | 1 cut(s) | 313 |
| Eco47I | GGWCC | 2 cut(s) | 44, 394 |
| Eco53kI | GAGCTC | 1 cut(s) | 11 |
| Eco57I | CTGAAG | 5 cut(s) | 78, 95, 359, 467, 1028 |
| Eco81I | CCTNAGG | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 1 cut(s) | 446 |
| Eco91I | GGTNACC | 1 cut(s) | 51 |
| EcoICRI | GAGCTC | 1 cut(s) | 11 |
| EcoO109I | RGGNCCY | 1 cut(s) | 394 |
| EcoO65I | GGTNACC | 1 cut(s) | 51 |
| EcoRII | CCWGG | 2 cut(s) | 1022, 1050 |
| EcoRV | GATATC | 1 cut(s) | 313 |
| EcoT14I | CCWWGG | 2 cut(s) | 47, 963 |
| EcoT22I | ATGCAT | 1 cut(s) | 725 |
| EcoT38I | GRGCYC | 2 cut(s) | 13, 141 |
| ErhI | CCWWGG | 2 cut(s) | 47, 963 |
| FaeI | CATG | 6 cut(s) | 51, 98, 206, 574, 632, 769 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 956, 988 |
| FaqI | GGGAC | 3 cut(s) | 57, 605, 1033 |
| FatI | CATG | 6 cut(s) | 47, 94, 202, 570, 628, 765 |
| FauNDI | CATATG | 1 cut(s) | 465 |
| FbaI | TGATCA | 3 cut(s) | 577, 631, 919 |
| Fnu4HI | GCNGC | 8 cut(s) | 19, 160, 262, 282, 436, 608, 842, 911 |
| FokI | GGATG | 6 cut(s) | 77, 416, 519, 752, 757, 1069 |
| FriOI | GRGCYC | 2 cut(s) | 13, 141 |
| Fsp4HI | GCNGC | 8 cut(s) | 19, 160, 262, 282, 436, 608, 842, 911 |
| GlaI | GCGC | 1 cut(s) | 362 |
| GluI | GCNGC | 8 cut(s) | 19, 160, 262, 282, 436, 608, 842, 911 |
| GsuI | CTGGAG | 1 cut(s) | 123 |
| HaeIII | GGCC | 5 cut(s) | 80, 190, 443, 523, 648 |
| HapII | CCGG | 3 cut(s) | 294, 334, 797 |
| HhaI | GCGC | 1 cut(s) | 363 |
| Hin1II | CATG | 6 cut(s) | 51, 98, 206, 574, 632, 769 |
| Hin6I | GCGC | 1 cut(s) | 361 |
| HinP1I | GCGC | 1 cut(s) | 361 |
| HincII | GTYRAC | 1 cut(s) | 658 |
| HindII | GTYRAC | 1 cut(s) | 658 |
| HinfI | GANTC | 3 cut(s) | 210, 803, 1028 |
| HpaI | GTTAAC | 1 cut(s) | 658 |
| HpaII | CCGG | 3 cut(s) | 294, 334, 797 |
| HphI | GGTGA | 1 cut(s) | 45 |
| Hpy166II | GTNNAC | 2 cut(s) | 658, 802 |
| Hpy188I | TCNGA | 7 cut(s) | 129, 217, 412, 486, 600, 636, 924 |
| Hpy188III | TCNNGA | 7 cut(s) | 316, 392, 556, 629, 701, 820, 1064 |
| Hpy8I | GTNNAC | 2 cut(s) | 658, 802 |
| HpyAV | CCTTC | 7 cut(s) | 34, 70, 131, 351, 491, 547, 787 |
| HpyCH4III | ACNGT | 3 cut(s) | 519, 562, 640 |
| HpyCH4IV | ACGT | 1 cut(s) | 33 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 358, 425, 529 |
| HpyF3I | CTNAG | 4 cut(s) | 126, 167, 185, 214 |
| HpySE526I | ACGT | 1 cut(s) | 33 |
| Hsp92II | CATG | 6 cut(s) | 51, 98, 206, 574, 632, 769 |
| HspAI | GCGC | 1 cut(s) | 361 |
| Ksp22I | TGATCA | 3 cut(s) | 577, 631, 919 |
| KspAI | GTTAAC | 1 cut(s) | 658 |
| Kzo9I | GATC | 5 cut(s) | 552, 577, 631, 834, 919 |
| LguI | GCTCTTC | 1 cut(s) | 84 |
| LmnI | GCTCC | 1 cut(s) | 16 |
| Lsp1109I | GCAGC | 8 cut(s) | 5, 146, 273, 293, 447, 619, 853, 922 |
| LweI | GCATC | 7 cut(s) | 55, 394, 406, 541, 594, 732, 1019 |
| MaeII | ACGT | 1 cut(s) | 33 |
| MaeIII | GTNAC | 1 cut(s) | 51 |
| MalI | GATC | 5 cut(s) | 554, 579, 633, 836, 921 |
| MboI | GATC | 5 cut(s) | 552, 577, 631, 834, 919 |
| MfeI | CAATTG | 1 cut(s) | 287 |
| MhlI | GDGCHC | 2 cut(s) | 13, 141 |
| MluCI | AATT | 8 cut(s) | 132, 276, 287, 696, 716, 850, 932, 1073 |
| MlyI | GAGTC | 1 cut(s) | 797 |
| MmeI | TCCRAC | 1 cut(s) | 726 |
| Mph1103I | ATGCAT | 1 cut(s) | 725 |
| MroXI | GAANNNNTTC | 1 cut(s) | 491 |
| MseI | TTAA | 5 cut(s) | 431, 657, 849, 882, 974 |
| MspI | CCGG | 3 cut(s) | 294, 334, 797 |
| MspR9I | CCNGG | 4 cut(s) | 294, 334, 1024, 1052 |
| MunI | CAATTG | 1 cut(s) | 287 |
| MvaI | CCWGG | 2 cut(s) | 1024, 1052 |
| MvnI | CGCG | 1 cut(s) | 821 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 358, 425, 529 |
| NciI | CCSGG | 2 cut(s) | 294, 334 |
| NcoI | CCATGG | 1 cut(s) | 47 |
| NdeI | CATATG | 1 cut(s) | 465 |
| NdeII | GATC | 5 cut(s) | 552, 577, 631, 834, 919 |
| NlaIII | CATG | 6 cut(s) | 51, 98, 206, 574, 632, 769 |
| NlaIV | GGNNCC | 1 cut(s) | 45 |
| NmeAIII | GCCGAG | 1 cut(s) | 419 |
| NmuCI | GTSAC | 1 cut(s) | 51 |
| NruI | TCGCGA | 1 cut(s) | 821 |
| NsiI | ATGCAT | 1 cut(s) | 725 |
| NspI | RCATGY | 1 cut(s) | 769 |
| PaeR7I | CTCGAG | 1 cut(s) | 446 |
| PagI | TCATGA | 1 cut(s) | 628 |
| PaqCI | CACCTGC | 1 cut(s) | 255 |
| PasI | CCCWGGG | 1 cut(s) | 1051 |
| PceI | AGGCCT | 1 cut(s) | 80 |
| PciSI | GCTCTTC | 1 cut(s) | 84 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 825 |
| PdmI | GAANNNNTTC | 1 cut(s) | 491 |
| PfeI | GAWTC | 2 cut(s) | 210, 1028 |
| PkrI | GCNGC | 8 cut(s) | 20, 161, 263, 283, 437, 609, 843, 912 |
| PleI | GAGTC | 1 cut(s) | 797 |
| PpsI | GAGTC | 1 cut(s) | 797 |
| PpuMI | RGGWCCY | 1 cut(s) | 394 |
| PshAI | GACNNNNGTC | 1 cut(s) | 49 |
| PsiI | TTATAA | 1 cut(s) | 1083 |
| Psp124BI | GAGCTC | 1 cut(s) | 13 |
| Psp5II | RGGWCCY | 1 cut(s) | 394 |
| Psp6I | CCWGG | 2 cut(s) | 1022, 1050 |
| PspEI | GGTNACC | 1 cut(s) | 51 |
| PspGI | CCWGG | 2 cut(s) | 1022, 1050 |
| PspN4I | GGNNCC | 1 cut(s) | 45 |
| PspPI | GGNCC | 5 cut(s) | 44, 189, 394, 442, 522 |
| PspPPI | RGGWCCY | 1 cut(s) | 394 |
| PspXI | VCTCGAGB | 1 cut(s) | 446 |
| PstI | CTGCAG | 1 cut(s) | 164 |
| RruI | TCGCGA | 1 cut(s) | 821 |
| SacI | GAGCTC | 1 cut(s) | 13 |
| SapI | GCTCTTC | 1 cut(s) | 84 |
| SaqAI | TTAA | 5 cut(s) | 431, 657, 849, 882, 974 |
| SatI | GCNGC | 8 cut(s) | 19, 160, 262, 282, 436, 608, 842, 911 |
| Sau3AI | GATC | 5 cut(s) | 552, 577, 631, 834, 919 |
| Sau96I | GGNCC | 5 cut(s) | 44, 189, 394, 442, 522 |
| SchI | GAGTC | 1 cut(s) | 797 |
| ScrFI | CCNGG | 4 cut(s) | 294, 334, 1024, 1052 |
| SduI | GDGCHC | 2 cut(s) | 13, 141 |
| SfaNI | GCATC | 7 cut(s) | 55, 394, 406, 541, 594, 732, 1019 |
| SfcI | CTRYAG | 2 cut(s) | 160, 1088 |
| Sfr274I | CTCGAG | 1 cut(s) | 446 |
| SinI | GGWCC | 2 cut(s) | 44, 394 |
| SlaI | CTCGAG | 1 cut(s) | 446 |
| SmlI | CTYRAG | 2 cut(s) | 398, 446 |
| SmoI | CTYRAG | 2 cut(s) | 398, 446 |
| Sse9I | AATT | 8 cut(s) | 132, 276, 287, 696, 716, 850, 932, 1073 |
| SseBI | AGGCCT | 1 cut(s) | 80 |
| SstI | GAGCTC | 1 cut(s) | 13 |
| StuI | AGGCCT | 1 cut(s) | 80 |
| StyD4I | CCNGG | 4 cut(s) | 292, 332, 1022, 1050 |
| StyI | CCWWGG | 2 cut(s) | 47, 963 |
| TaaI | ACNGT | 3 cut(s) | 519, 562, 640 |
| TaiI | ACGT | 1 cut(s) | 36 |
| TaqI | TCGA | 6 cut(s) | 7, 447, 837, 854, 873, 996 |
| TasI | AATT | 8 cut(s) | 132, 276, 287, 696, 716, 850, 932, 1073 |
| TfiI | GAWTC | 2 cut(s) | 210, 1028 |
| Tru1I | TTAA | 5 cut(s) | 431, 657, 849, 882, 974 |
| Tru9I | TTAA | 5 cut(s) | 431, 657, 849, 882, 974 |
| TscAI | CASTG | 3 cut(s) | 78, 522, 645 |
| TseFI | GTSAC | 1 cut(s) | 51 |
| TseI | GCWGC | 8 cut(s) | 18, 159, 261, 281, 435, 607, 841, 910 |
| Tsp45I | GTSAC | 1 cut(s) | 51 |
| TspDTI | ATGAA | 4 cut(s) | 452, 587, 769, 968 |
| TspRI | CASTG | 3 cut(s) | 78, 522, 645 |
| VpaK11BI | GGWCC | 2 cut(s) | 44, 394 |
| XapI | RAATTY | 1 cut(s) | 932 |
| XceI | RCATGY | 1 cut(s) | 769 |
| XhoI | CTCGAG | 1 cut(s) | 446 |
| XmnI | GAANNNNTTC | 1 cut(s) | 491 |
| Zsp2I | ATGCAT | 1 cut(s) | 725 |