Prupe.1G089700_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014346
Physical Location & Seq
Forward (+)
6721667 .. 6723526
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G089700.1

Sequence Viewer

Length: 1167 bp
ATGGGACGAGCTCCGTGTTGCGACAAGGCCAATGTCAAGAAGGGACCATGGTCACCTGAAGAAGATGCAAGACTCAAGGCGTATATTGAAGAGCATGGTACTGGTGGCAACTGGATTGCCCTTCCTCAGAAAATTGGGCTTAAAAGATGTGGAAAAAGTTGCAGGCTGAGATGGCTGAATTACTTGAGGCCCAACATCAAGCATGGTGGATTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTCTATATAAGTATTGGAAGCAGGTGGTCTATAATTGCTGCCCAATTACCTGGAAGGACAGACAATGATATAAAGAACTACTGGAACACCCGATTGAAGAAAAAGTTACTCGGAAGGCGCAAACAGTCTAACATCAATCGATCGCGGTCTGATCAAAGTGAGGATCACCTCAAGGACGCTGAAGATGCACATGCCTTAAGCAGCTCAGCCCTTGAAAGACTCCAACTCCATATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTCTACAACACTCCTGCACTGTGGCCCAAGTTGCATCCTTTGCAAGAAAAGATGATCCAGACCCTCCGATCCATGAATGATCAAAACTGTAACAACCCTCTGATGCACCATCATTCTCTCTCAAGCCCTCATCAAACAGTTGAAGGGCATAAGAGTAATAGTGATGTCTATGAACAATTGCAACCCACTTCTGCTTCTATCAGAATTCAGGAAGAATATGCAAAACTATGCAACCCCAAGAATATGGATGAGTTGGAGAATGCTTTGAATGGCATGTCATCCTCGGACGCCGCCGCATATCATGCTTACATCTCCACAAGCAATCAAGTGGACTCGACTATTGTGGTGACGAAAGCTGCCGATGGTATGGAGCATTCCAACGATGCAGGAACTCATGATCATCAGCAGATTAATTCGAGCTTCCAAACTGAATTTGGTGACATTCTTAGTAACAAATCTGTTGCTTACACACCACAACAGGAAGATGATCAAATAGCTGAATTTGATTGTTTTAAGGAAATGAATGGCTCCAAGGACAGCTTGGTGTGGTGGGCTAATGAGTTTGATGCCAAATCTGCATCCTCAAACTCCTGGGATTCTACTTCTGTTCTCCAGTCTCAAGGGATGTTTCAAGATTATGAATTGCGTTACAACCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001704 GO:0001706 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0007369 GO:0007492 GO:0008150 GO:0008285 GO:0009505 GO:0009531 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009790 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022603 GO:0030154 GO:0030312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0035987 GO:0042127 GO:0042221 GO:0042493 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048226 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048598 GO:0048646 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905421 GO:2000026 GO:2000067 GO:2000112 GO:2000113 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

389

Amino Acids

43.99

Weight (kDa)

6.01

Isoelectric Point (pI)

60.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57620
fragaria_vesca FvH4_4g09030
malus_domestica MD13G1266500.v1.1 MD16G1266600.v1.1
prunus_persica Prupe.1G089700_v2.0.a1
pyrus_communis pycom13g22950 pycom16g23540
rosa_chinensis RchiOBHm_Chr4g0403351
rosa_laevigata RLG00000008981
rosa_multiflora Rmu_sc0000381.1_g000013
rosa_roxburghii Rroxscaffold_5G00347990
rosa_rugosa Rorug04G0041600
rosa_samantha Rh4AG118500 Rh4BG111100 Rh4CG125900 Rh4DG111200
rosa_wichuraiana Rw4G009620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccII CGCG 1 cut(s) 388
AciI CCGC 3 cut(s) 388, 798, 801
AclWI GGATC 3 cut(s) 414, 556, 570
AcsI RAATTY 3 cut(s) 711, 938, 1007
AcuI CTGAAG 2 cut(s) 78, 444
AcyI GRCGYC 1 cut(s) 795
AfaI GTAC 1 cut(s) 100
AflII CTTAAG 1 cut(s) 439
AgsI TTSAA 8 cut(s) 89, 340, 458, 485, 494, 650, 775, 1139
AjnI CCWGG 2 cut(s) 292, 1097
AluBI AGCT 6 cut(s) 11, 447, 863, 927, 1004, 1047
AluI AGCT 6 cut(s) 11, 447, 863, 927, 1004, 1047
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 1128
AlwI GGATC 3 cut(s) 414, 556, 570
AoxI GGCC 3 cut(s) 27, 188, 530
ApeKI GCWGC 4 cut(s) 240, 281, 444, 863
ApoI RAATTY 3 cut(s) 711, 938, 1007
AseI ATTAAT 1 cut(s) 918
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 3 cut(s) 44, 189, 531
AsuHPI GGTGA 4 cut(s) 45, 401, 865, 956
AvaII GGWCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 4 cut(s) 252, 268, 456, 850
BccI CCATC 3 cut(s) 165, 624, 863
BciT130I CCWGG 2 cut(s) 294, 1099
BclI TGATCA 4 cut(s) 394, 586, 904, 994
BcoDI GTCTC 1 cut(s) 1128
BfmI CTRYAG 2 cut(s) 238, 1163
BfrI CTTAAG 1 cut(s) 439
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 6 cut(s) 241, 282, 445, 798, 801, 864
BlpI GCTNAGC 1 cut(s) 448
BlsI GCNGC 6 cut(s) 242, 283, 446, 799, 802, 865
Bme1390I CCNGG 2 cut(s) 294, 1099
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 44, 189, 531
BmiI GGNNCC 2 cut(s) 45, 1036
BmrFI CCNGG 2 cut(s) 294, 1099
BmsI GCATC 7 cut(s) 55, 418, 550, 600, 880, 1063, 1094
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 1103
Bpu1102I GCTNAGC 1 cut(s) 448
BpuEI CTTGAG 5 cut(s) 59, 205, 398, 613, 1110
Bsa29I ATCGAT 1 cut(s) 382
BsaHI GRCGYC 1 cut(s) 795
BsaJI CCNNGG 4 cut(s) 47, 789, 1038, 1098
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bse1I ACTGG 4 cut(s) 106, 116, 329, 1120
BseBI CCWGG 2 cut(s) 294, 1099
BseCI ATCGAT 1 cut(s) 382
BseDI CCNNGG 4 cut(s) 47, 789, 1038, 1098
BseGI GGATG 5 cut(s) 541, 760, 785, 1085, 1137
BseMII CTCAG 4 cut(s) 140, 158, 228, 462
BseNI ACTGG 4 cut(s) 106, 116, 329, 1120
BseXI GCAGC 4 cut(s) 252, 268, 456, 850
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 388
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 3 cut(s) 29, 190, 532
BshVI ATCGAT 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 13
BslFI GGGAC 2 cut(s) 18, 57
BsmAI GTCTC 1 cut(s) 1128
BsmFI GGGAC 2 cut(s) 18, 57
BsmI GAATGC 2 cut(s) 772, 880
BsnI GGCC 3 cut(s) 29, 190, 532
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 8 cut(s) 383, 394, 406, 561, 575, 586, 904, 994
Bsp1720I GCTNAGC 1 cut(s) 448
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 3 cut(s) 388, 798, 801
BspANI GGCC 3 cut(s) 29, 190, 532
BspCNI CTCAG 4 cut(s) 139, 159, 227, 461
BspDI ATCGAT 1 cut(s) 382
BspFNI CGCG 1 cut(s) 388
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 2 cut(s) 45, 1036
BspMAI CTGCAG 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 3 cut(s) 414, 556, 570
BspQI GCTCTTC 1 cut(s) 84
BspTI CTTAAG 1 cut(s) 439
BsrI ACTGG 4 cut(s) 106, 116, 329, 1120
BssECI CCNNGG 4 cut(s) 47, 789, 1038, 1098
BssMI GATC 8 cut(s) 383, 394, 406, 561, 575, 586, 904, 994
BssNI GRCGYC 1 cut(s) 795
BssT1I CCWWGG 2 cut(s) 47, 1038
Bst2UI CCWGG 2 cut(s) 294, 1099
Bst4CI ACNGT 4 cut(s) 369, 528, 596, 646
Bst6I CTCTTC 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 795
BstAFI CTTAAG 1 cut(s) 439
BstAPI GCANNNNNTGC 2 cut(s) 547, 809
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 5 cut(s) 126, 167, 214, 448, 953
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 5 cut(s) 541, 760, 785, 1085, 1137
BstFNI CGCG 1 cut(s) 388
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 8 cut(s) 386, 397, 409, 564, 578, 589, 907, 997
BstMAI GTCTC 1 cut(s) 1128
BstMBI GATC 8 cut(s) 383, 394, 406, 561, 575, 586, 904, 994
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 6 cut(s) 172, 428, 538, 547, 809, 1082
BstNI CCWGG 2 cut(s) 294, 1099
BstNSI RCATGY 2 cut(s) 437, 784
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 292, 1097
BstSFI CTRYAG 2 cut(s) 238, 1163
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 252, 268, 456, 850
BstV2I GAAGAC 1 cut(s) 231
BstXI CCANNNNNNTGG 2 cut(s) 293, 751
Bsu15I ATCGAT 1 cut(s) 382
BsuRI GGCC 3 cut(s) 29, 190, 532
BsuTUI ATCGAT 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 541, 760, 785, 1085, 1137
BtsIMutI CAGTG 1 cut(s) 524
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 164
CciI TCATGA 1 cut(s) 901
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 3 cut(s) 44, 189, 531
ClaI ATCGAT 1 cut(s) 382
CseI GACGC 2 cut(s) 428, 803
Csp6I GTAC 1 cut(s) 99
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 8 cut(s) 48, 95, 203, 434, 580, 781, 809, 902
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 5 cut(s) 126, 167, 214, 448, 953
DpnI GATC 8 cut(s) 385, 396, 408, 563, 577, 588, 906, 996
DpnII GATC 8 cut(s) 383, 394, 406, 561, 575, 586, 904, 994
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 47, 1038
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 78, 444
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 292, 1097
EcoT14I CCWWGG 2 cut(s) 47, 1038
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 2 cut(s) 47, 1038
FaeI CATG 8 cut(s) 51, 98, 206, 437, 583, 784, 812, 905
FalI AAGNNNNNCTT 2 cut(s) 1031, 1063
FaqI GGGAC 2 cut(s) 18, 57
FatI CATG 8 cut(s) 47, 94, 202, 433, 579, 780, 808, 901
FauNDI CATATG 1 cut(s) 474
FbaI TGATCA 4 cut(s) 394, 586, 904, 994
Fnu4HI GCNGC 6 cut(s) 241, 282, 445, 798, 801, 864
FokI GGATG 5 cut(s) 528, 767, 772, 1072, 1144
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 6 cut(s) 241, 282, 445, 798, 801, 864
GlaI GCGC 1 cut(s) 362
GluI GCNGC 6 cut(s) 241, 282, 445, 798, 801, 864
GsuI CTGGAG 1 cut(s) 1103
HaeIII GGCC 3 cut(s) 29, 190, 532
HgaI GACGC 2 cut(s) 428, 803
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 795
Hin1II CATG 8 cut(s) 51, 98, 206, 437, 583, 784, 812, 905
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 5 cut(s) 72, 210, 462, 839, 1103
HphI GGTGA 4 cut(s) 45, 401, 865, 956
Hpy166II GTNNAC 1 cut(s) 838
Hpy188I TCNGA 8 cut(s) 129, 217, 356, 394, 575, 609, 710, 793
Hpy188III TCNNGA 5 cut(s) 37, 565, 716, 902, 1139
Hpy8I GTNNAC 1 cut(s) 838
HpyAV CCTTC 6 cut(s) 34, 131, 291, 351, 500, 644
HpyCH4III ACNGT 4 cut(s) 369, 528, 596, 646
HpyF10VI GCNNNNNNNGC 6 cut(s) 172, 428, 538, 547, 809, 1082
HpyF3I CTNAG 5 cut(s) 126, 167, 214, 448, 953
Hsp92I GRCGYC 1 cut(s) 795
Hsp92II CATG 8 cut(s) 51, 98, 206, 437, 583, 784, 812, 905
HspAI GCGC 1 cut(s) 361
Ksp22I TGATCA 4 cut(s) 394, 586, 904, 994
Kzo9I GATC 8 cut(s) 383, 394, 406, 561, 575, 586, 904, 994
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 3 cut(s) 16, 877, 1040
Lsp1109I GCAGC 4 cut(s) 252, 268, 456, 850
LweI GCATC 7 cut(s) 55, 418, 550, 600, 880, 1063, 1094
MaeIII GTNAC 7 cut(s) 51, 348, 596, 853, 944, 956, 1154
MalI GATC 8 cut(s) 385, 396, 408, 563, 577, 588, 906, 996
MboI GATC 8 cut(s) 383, 394, 406, 561, 575, 586, 904, 994
MfeI CAATTG 1 cut(s) 683
MhlI GDGCHC 1 cut(s) 13
MlyI GAGTC 3 cut(s) 66, 456, 833
MmeI TCCRAC 3 cut(s) 490, 741, 909
MseI TTAA 4 cut(s) 141, 440, 918, 1020
MspCI CTTAAG 1 cut(s) 439
MspR9I CCNGG 2 cut(s) 294, 1099
MunI CAATTG 1 cut(s) 683
Mva1269I GAATGC 2 cut(s) 772, 880
MvaI CCWGG 2 cut(s) 294, 1099
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 6 cut(s) 172, 428, 538, 547, 809, 1082
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 474
NdeII GATC 8 cut(s) 383, 394, 406, 561, 575, 586, 904, 994
NlaIII CATG 8 cut(s) 51, 98, 206, 437, 583, 784, 812, 905
NlaIV GGNNCC 2 cut(s) 45, 1036
NmuCI GTSAC 3 cut(s) 51, 853, 944
NspI RCATGY 2 cut(s) 437, 784
PagI TCATGA 1 cut(s) 901
PaqCI CACCTGC 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 2 cut(s) 772, 880
PfeI GAWTC 2 cut(s) 210, 1103
PkrI GCNGC 6 cut(s) 242, 283, 446, 799, 802, 865
Ple19I CGATCG 1 cut(s) 386
PleI GAGTC 3 cut(s) 66, 456, 833
PpsI GAGTC 3 cut(s) 66, 456, 833
PshAI GACNNNNGTC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 292, 1097
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 2 cut(s) 292, 1097
PspN4I GGNNCC 2 cut(s) 45, 1036
PspPI GGNCC 3 cut(s) 44, 189, 531
PstI CTGCAG 1 cut(s) 242
PvuI CGATCG 1 cut(s) 386
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 141, 440, 918, 1020
SatI GCNGC 6 cut(s) 241, 282, 445, 798, 801, 864
Sau3AI GATC 8 cut(s) 383, 394, 406, 561, 575, 586, 904, 994
Sau96I GGNCC 3 cut(s) 44, 189, 531
SchI GAGTC 3 cut(s) 66, 456, 833
ScrFI CCNGG 2 cut(s) 294, 1099
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 7 cut(s) 55, 418, 550, 600, 880, 1063, 1094
SfcI CTRYAG 2 cut(s) 238, 1163
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 6 cut(s) 74, 184, 413, 439, 628, 1125
SmoI CTYRAG 6 cut(s) 74, 184, 413, 439, 628, 1125
SsiI CCGC 3 cut(s) 388, 798, 801
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 292, 1097
StyI CCWWGG 2 cut(s) 47, 1038
TaaI ACNGT 4 cut(s) 369, 528, 596, 646
TaqI TCGA 3 cut(s) 382, 842, 923
TauI GCSGC 2 cut(s) 800, 803
TfiI GAWTC 2 cut(s) 210, 1103
Tru1I TTAA 4 cut(s) 141, 440, 918, 1020
Tru9I TTAA 4 cut(s) 141, 440, 918, 1020
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 3 cut(s) 51, 853, 944
TseI GCWGC 4 cut(s) 240, 281, 444, 863
Tsp45I GTSAC 3 cut(s) 51, 853, 944
TspDTI ATGAA 4 cut(s) 596, 693, 1043, 1161
TspRI CASTG 1 cut(s) 531
Vha464I CTTAAG 1 cut(s) 439
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 918
XapI RAATTY 3 cut(s) 711, 938, 1007
XceI RCATGY 2 cut(s) 437, 784
XcmI CCANNNNNNNNNTGG 2 cut(s) 938, 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.