MD13G1266500.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
34667134 .. 34668630
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1266500.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGGGACGAGCTCCTTGCTGTGACAAGGCCAATGTCAAGAAGGGACCATGGTCACCTGAAGAGGATGCTAGACTTAAGGCCTATATTGAAGAGCATGGTACTGGTGGCAACTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAAAGATGTGGAAAAAGTTGCAGGCTGAGATGGCTCAACTACTTGAGGCCCAACATCAAGCATGGTGGATTCTCAGAAGAAGAAGACAACATCATCTGTAGCCTCTATATAAGTATTGGTAGCAGGTGGTCTATTATTGCTGCCCAGTTGCCTGGAAGAACTGATAATGATATAAAGAACTACTGGAACACCCGATTGAAGAAGAAGTTACTCGGAATGCGTAAACAGTCCAATATCAATCGATCTCCCCTTGATCAGAGTCAGGATCATCAGCTCAAGGATGCCGACGATGCACAGGCCTTAAGCAGCTCGACCCTTGAAAGACTTCAACTCCATATGCAGCTTCAAAGCCTTCAGAACCCTTTTTCTTTCTACAACCACCCTGCACTGTGGCCCAAGTTGCACCCTTTGCAAGAAAAGATGATCCAGACCCTCCGTTCCATGAATGATAATAACCCTATGATGCACCACCATGCTCCCACAACTCCTCTTCAACCAGCTCAAGGGCAAAAGGGCAATATCAATGATGTCTACGAGCAAGTGCAGCCCACTTCTGCGTCTATCTTAATTCAAGAGGAATATGCAAAATTATGCAATAAAAAAAATATGGATGAGCTGGAGAATCCTTTGAACGGCATGTCATCCTCGGACACCCGCTATCATGCTTTCATCTCCACAAGCAATCAAGTGGACTCAACTATTGTGGCGGCGAAAGCTGATAATGTAGAGCAGTCAAACAGCGTCGGGAGTCATGATCCTCATCACCAGGTTAATTTAAGCTTCCACGGTGAATTTGGTGACACCGATAACAATAAATGTGTTGGTTTCACAGCACAACAAGAACATGATCAAATGGCTGAATTTGATTGTTTCAAAGAAATGAATGTCTCCAAGGACAGCTTGGTGTGGTGGGCTAATGAGTTTGACGCCAAATCTGCCTCTTCAGACTCCTGGGATTCTACTTCTATTCTTCACTCCCAAGGGATGTTTCAAGACTATGAATTAGGTTACAACATGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

387

Amino Acids

43.8

Weight (kDa)

6.05

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 1.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 2e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 9.5e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 139 1.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57620
fragaria_vesca FvH4_4g09030
malus_domestica MD13G1266500.v1.1 MD16G1266600.v1.1
prunus_persica Prupe.1G089700_v2.0.a1
pyrus_communis pycom13g22950 pycom16g23540
rosa_chinensis RchiOBHm_Chr4g0403351
rosa_laevigata RLG00000008981
rosa_multiflora Rmu_sc0000381.1_g000013
rosa_roxburghii Rroxscaffold_5G00347990
rosa_rugosa Rorug04G0041600
rosa_samantha Rh4AG118500 Rh4BG111100 Rh4CG125900 Rh4DG111200
rosa_wichuraiana Rw4G009620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 672
AciI CCGC 2 cut(s) 796, 848
AclWI GGATC 3 cut(s) 414, 559, 890
AcsI RAATTY 2 cut(s) 932, 1001
AcuI CTGAAG 3 cut(s) 78, 479, 1068
AcyI GRCGYC 1 cut(s) 1068
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 644, 773
AflII CTTAAG 2 cut(s) 74, 442
AflIII ACRYGT 1 cut(s) 1155
AjnI CCWGG 3 cut(s) 292, 906, 1091
AjuI GAANNNNNNNTTGG 2 cut(s) 1113, 1145
AluBI AGCT 9 cut(s) 11, 415, 450, 484, 641, 757, 857, 921, 1041
AluI AGCT 9 cut(s) 11, 415, 450, 484, 641, 757, 857, 921, 1041
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 1033
AlwI GGATC 3 cut(s) 414, 559, 890
AoxI GGCC 5 cut(s) 27, 78, 188, 438, 533
ApeKI GCWGC 4 cut(s) 281, 447, 481, 685
ApoI RAATTY 2 cut(s) 932, 1001
Asp700I GAANNNNTTC 1 cut(s) 465
AspS9I GGNCC 3 cut(s) 44, 189, 534
AsuHPI GGTGA 4 cut(s) 45, 896, 941, 950
AvaII GGWCC 1 cut(s) 44
BanII GRGCYC 2 cut(s) 13, 141
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 4 cut(s) 268, 459, 493, 697
BccI CCATC 1 cut(s) 165
BceAI ACGGC 1 cut(s) 790
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 3 cut(s) 294, 908, 1093
BclI TGATCA 2 cut(s) 394, 988
BcoDI GTCTC 1 cut(s) 1033
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 238
BfrI CTTAAG 2 cut(s) 74, 442
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 5 cut(s) 282, 448, 482, 686, 849
BlsI GCNGC 5 cut(s) 283, 449, 483, 687, 850
Bme1390I CCNGG 3 cut(s) 294, 908, 1093
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 44, 189, 534
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 3 cut(s) 294, 908, 1093
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 4 cut(s) 55, 412, 421, 594
BmuI ACTGGG 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 779
BpuEI CTTGAG 3 cut(s) 205, 401, 627
Bsa29I ATCGAT 1 cut(s) 382
BsaBI GATNNNNATC 1 cut(s) 900
BsaHI GRCGYC 1 cut(s) 1068
BsaJI CCNNGG 6 cut(s) 47, 786, 925, 1032, 1092, 1120
BsaXI ACNNNNNCTCC 2 cut(s) 456, 486
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 773
Bse1I ACTGG 4 cut(s) 106, 116, 286, 329
Bse8I GATNNNNATC 1 cut(s) 900
BseBI CCWGG 3 cut(s) 294, 908, 1093
BseCI ATCGAT 1 cut(s) 382
BseDI CCNNGG 6 cut(s) 47, 786, 925, 1032, 1092, 1120
BseGI GGATG 5 cut(s) 70, 427, 757, 782, 1131
BseJI GATNNNNATC 1 cut(s) 900
BseLI CCNNNNNNNGG 2 cut(s) 644, 773
BseMII CTCAG 3 cut(s) 140, 158, 228
BseNI ACTGG 4 cut(s) 106, 116, 286, 329
BseRI GAGGAG 1 cut(s) 618
BseXI GCAGC 4 cut(s) 268, 459, 493, 697
BsgI GTGCAG 2 cut(s) 510, 704
BshFI GGCC 5 cut(s) 29, 80, 190, 440, 535
BshVI ATCGAT 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 13
BslFI GGGAC 2 cut(s) 18, 57
BslI CCNNNNNNNGG 2 cut(s) 644, 773
BsmAI GTCTC 1 cut(s) 1033
BsmFI GGGAC 2 cut(s) 18, 57
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 5 cut(s) 29, 80, 190, 440, 535
Bsp1286I GDGCHC 2 cut(s) 13, 141
Bsp143I GATC 6 cut(s) 383, 394, 406, 564, 895, 988
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 796, 848
BspANI GGCC 5 cut(s) 29, 80, 190, 440, 535
BspCNI CTCAG 3 cut(s) 139, 159, 227
BspDI ATCGAT 1 cut(s) 382
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 3 cut(s) 414, 559, 890
BspQI GCTCTTC 2 cut(s) 84, 126
BspTI CTTAAG 2 cut(s) 74, 442
BsrI ACTGG 4 cut(s) 106, 116, 286, 329
BssECI CCNNGG 6 cut(s) 47, 786, 925, 1032, 1092, 1120
BssMI GATC 6 cut(s) 383, 394, 406, 564, 895, 988
BssNI GRCGYC 1 cut(s) 1068
BssT1I CCWWGG 3 cut(s) 47, 1032, 1120
Bst2UI CCWGG 3 cut(s) 294, 908, 1093
Bst4CI ACNGT 3 cut(s) 369, 531, 929
Bst6I CTCTTC 5 cut(s) 54, 84, 126, 636, 1087
BstACI GRCGYC 1 cut(s) 1068
BstAFI CTTAAG 2 cut(s) 74, 442
BstAPI GCANNNNNTGC 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 3 cut(s) 126, 167, 214
BstDSI CCRYGG 2 cut(s) 47, 925
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 5 cut(s) 70, 427, 757, 782, 1131
BstKTI GATC 6 cut(s) 386, 397, 409, 567, 898, 991
BstMAI GTCTC 1 cut(s) 1033
BstMBI GATC 6 cut(s) 383, 394, 406, 564, 895, 988
BstMWI GCNNNNNNNGC 7 cut(s) 172, 431, 541, 550, 685, 854, 1076
BstNI CCWGG 3 cut(s) 294, 908, 1093
BstNSI RCATGY 2 cut(s) 781, 1159
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 3 cut(s) 292, 906, 1091
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 4 cut(s) 268, 459, 493, 697
BstV2I GAAGAC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 382
BsuRI GGCC 5 cut(s) 29, 80, 190, 440, 535
BsuTUI ATCGAT 1 cut(s) 382
BtgI CCRYGG 2 cut(s) 47, 925
BtsCI GGATG 5 cut(s) 70, 427, 757, 782, 1131
BtsIMutI CAGTG 1 cut(s) 527
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 164
CciI TCATGA 1 cut(s) 892
Cfr13I GGNCC 3 cut(s) 44, 189, 534
ClaI ATCGAT 1 cut(s) 382
CseI GACGC 3 cut(s) 687, 871, 1076
CsiI ACCWGGT 1 cut(s) 906
Csp6I GTAC 1 cut(s) 99
CspCI CAANNNNNGTGG 6 cut(s) 130, 165, 187, 222, 825, 860
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 3 cut(s) 126, 167, 214
DpnI GATC 6 cut(s) 385, 396, 408, 566, 897, 990
DpnII GATC 6 cut(s) 383, 394, 406, 564, 895, 988
Eam1104I CTCTTC 5 cut(s) 54, 84, 126, 636, 1087
EarI CTCTTC 5 cut(s) 54, 84, 126, 636, 1087
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 3 cut(s) 47, 1032, 1120
Eco147I AGGCCT 2 cut(s) 80, 440
Eco24I GRGCYC 2 cut(s) 13, 141
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 78, 479, 1068
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 3 cut(s) 292, 906, 1091
EcoT14I CCWWGG 3 cut(s) 47, 1032, 1120
EcoT38I GRGCYC 2 cut(s) 13, 141
ErhI CCWWGG 3 cut(s) 47, 1032, 1120
FalI AAGNNNNNCTT 2 cut(s) 1025, 1057
FaqI GGGAC 2 cut(s) 18, 57
FauI CCCGC 1 cut(s) 803
FauNDI CATATG 1 cut(s) 477
FbaI TGATCA 2 cut(s) 394, 988
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 5 cut(s) 282, 448, 482, 686, 849
FokI GGATG 5 cut(s) 77, 434, 764, 769, 1138
FriOI GRGCYC 2 cut(s) 13, 141
Fsp4HI GCNGC 5 cut(s) 282, 448, 482, 686, 849
FspBI CTAG 1 cut(s) 69
GluI GCNGC 5 cut(s) 282, 448, 482, 686, 849
GsuI CTGGAG 1 cut(s) 779
HaeIII GGCC 5 cut(s) 29, 80, 190, 440, 535
HgaI GACGC 3 cut(s) 687, 871, 1076
Hin1I GRCGYC 1 cut(s) 1068
HindIII AAGCTT 1 cut(s) 919
HinfI GANTC 7 cut(s) 210, 400, 763, 833, 889, 1088, 1097
HphI GGTGA 4 cut(s) 45, 896, 941, 950
Hpy166II GTNNAC 3 cut(s) 365, 673, 832
Hpy188I TCNGA 7 cut(s) 129, 217, 356, 399, 498, 790, 1087
Hpy188III TCNNGA 7 cut(s) 37, 404, 568, 713, 886, 893, 1133
Hpy8I GTNNAC 3 cut(s) 365, 673, 832
Hpy99I CGWCG 2 cut(s) 431, 887
HpyAV CCTTC 2 cut(s) 34, 503
HpyCH4III ACNGT 3 cut(s) 369, 531, 929
HpyF10VI GCNNNNNNNGC 7 cut(s) 172, 431, 541, 550, 685, 854, 1076
HpyF3I CTNAG 3 cut(s) 126, 167, 214
Hsp92I GRCGYC 1 cut(s) 1068
Ksp22I TGATCA 2 cut(s) 394, 988
Kzo9I GATC 6 cut(s) 383, 394, 406, 564, 895, 988
LguI GCTCTTC 2 cut(s) 84, 126
LmnI GCTCC 2 cut(s) 16, 622
Lsp1109I GCAGC 4 cut(s) 268, 459, 493, 697
LweI GCATC 4 cut(s) 55, 412, 421, 594
MabI ACCWGGT 1 cut(s) 906
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 5 cut(s) 20, 51, 348, 938, 1148
MalI GATC 6 cut(s) 385, 396, 408, 566, 897, 990
MboI GATC 6 cut(s) 383, 394, 406, 564, 895, 988
MhlI GDGCHC 2 cut(s) 13, 141
MluCI AATT 7 cut(s) 132, 708, 728, 913, 932, 1001, 1142
MlyI GAGTC 4 cut(s) 409, 827, 898, 1082
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 5 cut(s) 75, 443, 707, 912, 917
MslI CAYNNNNRTG 1 cut(s) 612
MspCI CTTAAG 2 cut(s) 74, 442
MspR9I CCNGG 3 cut(s) 294, 908, 1093
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 3 cut(s) 294, 908, 1093
MwoI GCNNNNNNNGC 7 cut(s) 172, 431, 541, 550, 685, 854, 1076
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 477
NdeII GATC 6 cut(s) 383, 394, 406, 564, 895, 988
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 3 cut(s) 20, 51, 938
NspI RCATGY 2 cut(s) 781, 1159
PagI TCATGA 1 cut(s) 892
PaqCI CACCTGC 1 cut(s) 255
PceI AGGCCT 2 cut(s) 80, 440
PciI ACATGT 1 cut(s) 1155
PciSI GCTCTTC 2 cut(s) 84, 126
PctI GAATGC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 3 cut(s) 210, 763, 1097
PkrI GCNGC 5 cut(s) 283, 449, 483, 687, 850
PleI GAGTC 4 cut(s) 408, 827, 897, 1082
PpsI GAGTC 4 cut(s) 408, 827, 897, 1082
PscI ACATGT 1 cut(s) 1155
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 292, 906, 1091
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 3 cut(s) 292, 906, 1091
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 3 cut(s) 44, 189, 534
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 612
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 2 cut(s) 84, 126
SaqAI TTAA 5 cut(s) 75, 443, 707, 912, 917
SatI GCNGC 5 cut(s) 282, 448, 482, 686, 849
Sau3AI GATC 6 cut(s) 383, 394, 406, 564, 895, 988
Sau96I GGNCC 3 cut(s) 44, 189, 534
SchI GAGTC 4 cut(s) 409, 827, 898, 1082
ScrFI CCNGG 3 cut(s) 294, 908, 1093
SduI GDGCHC 2 cut(s) 13, 141
SexAI ACCWGGT 1 cut(s) 906
SfaNI GCATC 4 cut(s) 55, 412, 421, 594
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 5 cut(s) 74, 184, 416, 442, 642
SmoI CTYRAG 5 cut(s) 74, 184, 416, 442, 642
Sse9I AATT 7 cut(s) 132, 708, 728, 913, 932, 1001, 1142
SseBI AGGCCT 2 cut(s) 80, 440
SsiI CCGC 2 cut(s) 796, 848
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 2 cut(s) 80, 440
StyD4I CCNGG 3 cut(s) 292, 906, 1091
StyI CCWWGG 3 cut(s) 47, 1032, 1120
TaaI ACNGT 3 cut(s) 369, 531, 929
TaqI TCGA 2 cut(s) 382, 452
TasI AATT 7 cut(s) 132, 708, 728, 913, 932, 1001, 1142
TauI GCSGC 1 cut(s) 851
TfiI GAWTC 3 cut(s) 210, 763, 1097
Tru1I TTAA 5 cut(s) 75, 443, 707, 912, 917
Tru9I TTAA 5 cut(s) 75, 443, 707, 912, 917
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 3 cut(s) 20, 51, 938
TseI GCWGC 4 cut(s) 281, 447, 481, 685
Tsp45I GTSAC 3 cut(s) 20, 51, 938
TspDTI ATGAA 4 cut(s) 599, 799, 1037, 1155
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 1 cut(s) 534
Vha464I CTTAAG 2 cut(s) 74, 442
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 932, 1001
XceI RCATGY 2 cut(s) 781, 1159
XcmI CCANNNNNNNNNTGG 2 cut(s) 932, 1039
XmiI GTMKAC 1 cut(s) 672
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.