pycom13g22950
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
20718253 .. 20720655
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g22950.1

Sequence Viewer

Length: 1665 bp
ATGGAAGCTTCTTCTAACCGATACCCTTTAATATTGCAAAAGAAGAAATCTGTGCCGTACTTTGTCATGTTGCATGCATTGTTAATTATATACGATCGATCCACTAATCCAAAAAAAAAATTGGTATCACATCATCCATTCTTCCTACCTATAAATCTTTGTCTTCCTTTCCCAATTTTTCCTAACAATCTCGACAGAAAAAAAAGAGAGAAAAGATCAATCGAGATGGGACGAGCTCCGTGCTGTGACAAGGCCAATGTCAAGAAGGGGCCATGGTCACCTGAAGAGGATGCTAGACTTAAGGCCTATATTGAAGAGAATGGTACTGGTGGCAACTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAAAGATGTGGAAAAAGTTGCAGGCTGAGATGGCTCAACTACTTGAGGCCCAACATCAAGCATGGTGGATTCTCAGAAAAAGAAGACAACATCATCTGCAGCCTCTATATAAGTATTGGTAGCAGGTGGTCTATTATTGCTGCCCAGTTGCCTGGAAGAACTGATAATGATATAAAGAACTACTGGAATACCCGATTGAAGAAAAAGTTACTCGGAATGCGTAAACAATCCAATATCAATCGATCTCCCTCTGATCAGAGTCAGGATCATCAGCTCAAGGATTCCGACGATGCACAGGCCTTAAGCAGCTCTGCCCTTGAAAGACTTCAACTCCATATGCAGCTTCAAAGCCTTCAGAACCCTTTTTCTTTCTACAACCACCCTGCACTGTGGCCCAAGTTGCACCCTTTGCAAGAAAAGATGATCCAGACCCTCCGTTCCATGAATGATAATAACCCTATGATGCACCACCATGCTCTCACAACTCCTCTTCAGCCAGTTCAAGGGCAAAAGGGTAATATCAATGATGTCTACGAGCAAGTGGAGCCCACTTCTGCGTCTATCTTAATTCAAGAGGAATATGCAAAATTATGCAATCAAAAAAGTATGGATGAGCTGGAGAATCCTTTGAATGGCATGTCACCCTCGGACACCCGCTATCATGCTTGCATCTCCACAAGCAATCAAGTGGACTCAACTATTGTGGCGGCGAAAGCTGATAATGTAGAGCAGTCAAACAGCGTCGGAACTCATGGCCCTCATCACCAGGTTAATTTAAGCTTCCACGGTGCATTTGGTGACACCGATAACAATAAATGTGTTGGTTTCACAGCACAACAAGAACATGATCAAATGGCTGAATTTGATTGTTTCAAAGAAATGAATGTCTCCAAGGACAGCTTGGTGTGGTGGGCTAATGAGTTTGACGCCAAATCTGCCTCTTCAGACTCCTGGGATTCTACTTCTATTCTTCACTCCCAAGGGGTGTTTCAAGACTATGAATTAGGTTACAACATATTTACCGACCTTATTGTGGACTTGGGTTATACTTCTATTGATGTGATTTACAATGTGGTTCATAGATGTGTTCAAATAGCTTTATCGAATAGGGAACTGGGTATGGTAATTTTTCTGGGCATAGTGTGCATGTTTTGTAAATTTGTGTTAAGAATAATGTTAATATGTCATCATTCTCTATTTCGTTCACTTGTTATAGGAAATACGAAATGGCAAGGAAATCCAAGTGAACATAAGAACCTAATTAATAAAAGTTATTATGGAATTATTGAACTTGCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

555

Amino Acids

63.11

Weight (kDa)

8.4

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 89 - 137 2.6e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 92 - 151 9.4e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 144 - 187 1.6e-11 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 146 - 214 3.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57620
fragaria_vesca FvH4_4g09030
malus_domestica MD13G1266500.v1.1 MD16G1266600.v1.1
prunus_persica Prupe.1G089700_v2.0.a1
pyrus_communis pycom13g22950 pycom16g23540
rosa_chinensis RchiOBHm_Chr4g0403351
rosa_laevigata RLG00000008981
rosa_multiflora Rmu_sc0000381.1_g000013
rosa_roxburghii Rroxscaffold_5G00347990
rosa_rugosa Rorug04G0041600
rosa_samantha Rh4AG118500 Rh4BG111100 Rh4CG125900 Rh4DG111200
rosa_wichuraiana Rw4G009620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 480
Acc36I ACCTGC 1 cut(s) 480
AccI GTMKAC 1 cut(s) 897
AciI CCGC 2 cut(s) 1021, 1073
AclWI GGATC 3 cut(s) 93, 639, 784
AcsI RAATTY 2 cut(s) 1226, 1523
AcuI CTGAAG 4 cut(s) 303, 704, 842, 1293
AcyI GRCGYC 1 cut(s) 1293
AfaI GTAC 2 cut(s) 59, 325
AfiI CCNNNNNNNGG 3 cut(s) 869, 998, 1399
AflII CTTAAG 2 cut(s) 299, 667
AjnI CCWGG 3 cut(s) 517, 1131, 1316
AjuI GAANNNNNNNTTGG 2 cut(s) 1338, 1370
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 1258
AlwI GGATC 3 cut(s) 93, 639, 784
AoxI GGCC 7 cut(s) 252, 269, 303, 413, 663, 758, 1120
ApeKI GCWGC 4 cut(s) 465, 506, 672, 706
ApoI RAATTY 2 cut(s) 1226, 1523
AseI ATTAAT 1 cut(s) 1629
Asp700I GAANNNNTTC 1 cut(s) 690
AspS9I GGNCC 4 cut(s) 269, 414, 759, 1121
AsuHPI GGTGA 4 cut(s) 270, 999, 1121, 1175
BanII GRGCYC 3 cut(s) 238, 366, 915
BbsI GAAGAC 2 cut(s) 155, 456
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 4 cut(s) 477, 493, 684, 718
BccI CCATC 2 cut(s) 220, 390
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 3 cut(s) 519, 1133, 1318
BclI TGATCA 2 cut(s) 619, 1213
BcoDI GTCTC 1 cut(s) 1258
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 463
BfrI CTTAAG 2 cut(s) 299, 667
BfuAI ACCTGC 1 cut(s) 480
BisI GCNGC 5 cut(s) 466, 507, 673, 707, 1074
BlsI GCNGC 5 cut(s) 467, 508, 674, 708, 1075
Bme1390I CCNGG 3 cut(s) 519, 1133, 1318
BmgT120I GGNCC 4 cut(s) 269, 414, 759, 1121
BmiI GGNNCC 2 cut(s) 270, 912
BmrFI CCNGG 3 cut(s) 519, 1133, 1318
BmrI ACTGGG 2 cut(s) 505, 1490
BmsI GCATC 4 cut(s) 280, 646, 819, 1044
BmuI ACTGGG 2 cut(s) 505, 1490
BpiI GAAGAC 2 cut(s) 155, 456
BpmI CTGGAG 1 cut(s) 1004
BpuEI CTTGAG 2 cut(s) 430, 626
Bsa29I ATCGAT 2 cut(s) 97, 607
BsaHI GRCGYC 1 cut(s) 1293
BsaJI CCNNGG 6 cut(s) 272, 1011, 1150, 1257, 1317, 1345
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 3 cut(s) 869, 998, 1399
Bse1I ACTGG 6 cut(s) 331, 341, 511, 554, 863, 1485
BseBI CCWGG 3 cut(s) 519, 1133, 1318
BseCI ATCGAT 2 cut(s) 97, 607
BseDI CCNNGG 6 cut(s) 272, 1011, 1150, 1257, 1317, 1345
BseGI GGATG 3 cut(s) 133, 295, 982
BseLI CCNNNNNNNGG 3 cut(s) 869, 998, 1399
BseMII CTCAG 3 cut(s) 365, 383, 453
BseNI ACTGG 6 cut(s) 331, 341, 511, 554, 863, 1485
BseRI GAGGAG 1 cut(s) 843
BseXI GCAGC 4 cut(s) 477, 493, 684, 718
BsgI GTGCAG 1 cut(s) 735
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 7 cut(s) 254, 271, 305, 415, 665, 760, 1122
BshVI ATCGAT 2 cut(s) 97, 607
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 238
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 3 cut(s) 869, 998, 1399
BsmAI GTCTC 1 cut(s) 1258
BsmFI GGGAC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 7 cut(s) 254, 271, 305, 415, 665, 760, 1122
Bsp1286I GDGCHC 3 cut(s) 238, 366, 915
Bsp143I GATC 8 cut(s) 94, 98, 215, 608, 619, 631, 789, 1213
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 2 cut(s) 1021, 1073
BspANI GGCC 7 cut(s) 254, 271, 305, 415, 665, 760, 1122
BspCNI CTCAG 3 cut(s) 364, 384, 452
BspDI ATCGAT 2 cut(s) 97, 607
BspLI GGNNCC 2 cut(s) 270, 912
BspMAI CTGCAG 1 cut(s) 467
BspMI ACCTGC 1 cut(s) 480
BspPI GGATC 3 cut(s) 93, 639, 784
BspQI GCTCTTC 1 cut(s) 351
BspTI CTTAAG 2 cut(s) 299, 667
BsrI ACTGG 6 cut(s) 331, 341, 511, 554, 863, 1485
BssECI CCNNGG 6 cut(s) 272, 1011, 1150, 1257, 1317, 1345
BssMI GATC 8 cut(s) 94, 98, 215, 608, 619, 631, 789, 1213
BssNI GRCGYC 1 cut(s) 1293
BssT1I CCWWGG 3 cut(s) 272, 1257, 1345
Bst2UI CCWGG 3 cut(s) 519, 1133, 1318
Bst4CI ACNGT 2 cut(s) 756, 1154
Bst6I CTCTTC 5 cut(s) 279, 309, 351, 861, 1312
BstACI GRCGYC 1 cut(s) 1293
BstAFI CTTAAG 2 cut(s) 299, 667
BstAPI GCANNNNNTGC 2 cut(s) 775, 1509
BstC8I GCNNGC 3 cut(s) 75, 389, 1033
BstDEI CTNAG 3 cut(s) 351, 392, 439
BstDSI CCRYGG 2 cut(s) 272, 1150
BstEII GGTNACC 1 cut(s) 276
BstF5I GGATG 3 cut(s) 133, 295, 982
BstKTI GATC 8 cut(s) 97, 101, 218, 611, 622, 634, 792, 1216
BstMAI GTCTC 1 cut(s) 1258
BstMBI GATC 8 cut(s) 94, 98, 215, 608, 619, 631, 789, 1213
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 7 cut(s) 397, 766, 775, 910, 1079, 1301, 1509
BstNI CCWGG 3 cut(s) 519, 1133, 1318
BstNSI RCATGY 3 cut(s) 77, 1006, 1516
BstPI GGTNACC 1 cut(s) 276
BstSCI CCNGG 3 cut(s) 517, 1131, 1316
BstSFI CTRYAG 1 cut(s) 463
BstV1I GCAGC 4 cut(s) 477, 493, 684, 718
BstV2I GAAGAC 2 cut(s) 155, 456
BstXI CCANNNNNNTGG 1 cut(s) 518
Bsu15I ATCGAT 2 cut(s) 97, 607
BsuRI GGCC 7 cut(s) 254, 271, 305, 415, 665, 760, 1122
BsuTUI ATCGAT 2 cut(s) 97, 607
BtgI CCRYGG 2 cut(s) 272, 1150
BtsCI GGATG 3 cut(s) 133, 295, 982
BtsIMutI CAGTG 1 cut(s) 752
BveI ACCTGC 1 cut(s) 480
Cac8I GCNNGC 3 cut(s) 75, 389, 1033
Cfr13I GGNCC 4 cut(s) 269, 414, 759, 1121
ClaI ATCGAT 2 cut(s) 97, 607
CseI GACGC 3 cut(s) 912, 1096, 1301
CsiI ACCWGGT 1 cut(s) 1131
Csp6I GTAC 2 cut(s) 58, 324
CspCI CAANNNNNGTGG 6 cut(s) 355, 390, 412, 447, 1050, 1085
CviQI GTAC 2 cut(s) 58, 324
DdeI CTNAG 3 cut(s) 351, 392, 439
DpnI GATC 8 cut(s) 96, 100, 217, 610, 621, 633, 791, 1215
DpnII GATC 8 cut(s) 94, 98, 215, 608, 619, 631, 789, 1213
Eam1104I CTCTTC 5 cut(s) 279, 309, 351, 861, 1312
EarI CTCTTC 5 cut(s) 279, 309, 351, 861, 1312
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 3 cut(s) 272, 1257, 1345
Eco147I AGGCCT 2 cut(s) 305, 665
Eco24I GRGCYC 3 cut(s) 238, 366, 915
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 4 cut(s) 303, 704, 842, 1293
Eco91I GGTNACC 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 276
EcoRII CCWGG 3 cut(s) 517, 1131, 1316
EcoT14I CCWWGG 3 cut(s) 272, 1257, 1345
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 3 cut(s) 238, 366, 915
ErhI CCWWGG 3 cut(s) 272, 1257, 1345
FalI AAGNNNNNCTT 2 cut(s) 1250, 1282
FaqI GGGAC 1 cut(s) 243
FauI CCCGC 1 cut(s) 1028
FauNDI CATATG 1 cut(s) 702
FbaI TGATCA 2 cut(s) 619, 1213
FblI GTMKAC 1 cut(s) 897
Fnu4HI GCNGC 5 cut(s) 466, 507, 673, 707, 1074
FokI GGATG 3 cut(s) 120, 302, 989
FriOI GRGCYC 3 cut(s) 238, 366, 915
Fsp4HI GCNGC 5 cut(s) 466, 507, 673, 707, 1074
FspBI CTAG 1 cut(s) 294
GluI GCNGC 5 cut(s) 466, 507, 673, 707, 1074
GsuI CTGGAG 1 cut(s) 1004
HaeIII GGCC 7 cut(s) 254, 271, 305, 415, 665, 760, 1122
HgaI GACGC 3 cut(s) 912, 1096, 1301
Hin1I GRCGYC 1 cut(s) 1293
HindIII AAGCTT 2 cut(s) 6, 1144
HinfI GANTC 7 cut(s) 435, 625, 647, 988, 1058, 1313, 1322
HphI GGTGA 4 cut(s) 270, 999, 1121, 1175
Hpy166II GTNNAC 6 cut(s) 590, 898, 1057, 1402, 1571, 1613
Hpy188III TCNNGA 7 cut(s) 191, 223, 262, 629, 793, 938, 1358
Hpy8I GTNNAC 6 cut(s) 590, 898, 1057, 1402, 1571, 1613
Hpy99I CGWCG 2 cut(s) 656, 1112
HpyAV CCTTC 2 cut(s) 259, 728
HpyCH4III ACNGT 2 cut(s) 756, 1154
HpyF10VI GCNNNNNNNGC 7 cut(s) 397, 766, 775, 910, 1079, 1301, 1509
HpyF3I CTNAG 3 cut(s) 351, 392, 439
Hsp92I GRCGYC 1 cut(s) 1293
Ksp22I TGATCA 2 cut(s) 619, 1213
Kzo9I GATC 8 cut(s) 94, 98, 215, 608, 619, 631, 789, 1213
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 241, 910
Lsp1109I GCAGC 4 cut(s) 477, 493, 684, 718
LweI GCATC 4 cut(s) 280, 646, 819, 1044
MabI ACCWGGT 1 cut(s) 1131
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 6 cut(s) 245, 276, 573, 1005, 1163, 1373
MalI GATC 8 cut(s) 96, 100, 217, 610, 621, 633, 791, 1215
MboI GATC 8 cut(s) 94, 98, 215, 608, 619, 631, 789, 1213
MhlI GDGCHC 3 cut(s) 238, 366, 915
MlyI GAGTC 3 cut(s) 634, 1052, 1307
MmeI TCCRAC 2 cut(s) 675, 1090
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 690
MslI CAYNNNNRTG 2 cut(s) 837, 1449
MspCI CTTAAG 2 cut(s) 299, 667
MspR9I CCNGG 3 cut(s) 519, 1133, 1318
Mva1269I GAATGC 1 cut(s) 588
MvaI CCWGG 3 cut(s) 519, 1133, 1318
MwoI GCNNNNNNNGC 7 cut(s) 397, 766, 775, 910, 1079, 1301, 1509
NcoI CCATGG 1 cut(s) 272
NdeI CATATG 1 cut(s) 702
NdeII GATC 8 cut(s) 94, 98, 215, 608, 619, 631, 789, 1213
NlaIV GGNNCC 2 cut(s) 270, 912
NmuCI GTSAC 4 cut(s) 245, 276, 1005, 1163
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 3 cut(s) 77, 1006, 1516
PaeI GCATGC 1 cut(s) 77
PaqCI CACCTGC 1 cut(s) 480
PceI AGGCCT 2 cut(s) 305, 665
PciSI GCTCTTC 1 cut(s) 351
PctI GAATGC 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 4 cut(s) 435, 647, 988, 1322
PkrI GCNGC 5 cut(s) 467, 508, 674, 708, 1075
Ple19I CGATCG 1 cut(s) 97
PleI GAGTC 3 cut(s) 633, 1052, 1307
PpsI GAGTC 3 cut(s) 633, 1052, 1307
PshBI ATTAAT 1 cut(s) 1629
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 3 cut(s) 517, 1131, 1316
PspEI GGTNACC 1 cut(s) 276
PspGI CCWGG 3 cut(s) 517, 1131, 1316
PspN4I GGNNCC 2 cut(s) 270, 912
PspPI GGNCC 4 cut(s) 269, 414, 759, 1121
PstI CTGCAG 1 cut(s) 467
PvuI CGATCG 1 cut(s) 97
RsaI GTAC 2 cut(s) 59, 325
RsaNI GTAC 2 cut(s) 58, 324
RseI CAYNNNNRTG 2 cut(s) 837, 1449
SacI GAGCTC 1 cut(s) 238
SapI GCTCTTC 1 cut(s) 351
SatI GCNGC 5 cut(s) 466, 507, 673, 707, 1074
Sau3AI GATC 8 cut(s) 94, 98, 215, 608, 619, 631, 789, 1213
Sau96I GGNCC 4 cut(s) 269, 414, 759, 1121
SchI GAGTC 3 cut(s) 634, 1052, 1307
ScrFI CCNGG 3 cut(s) 519, 1133, 1318
SduI GDGCHC 3 cut(s) 238, 366, 915
SexAI ACCWGGT 1 cut(s) 1131
SfaNI GCATC 4 cut(s) 280, 646, 819, 1044
SfcI CTRYAG 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 837, 1449
SmlI CTYRAG 4 cut(s) 299, 409, 641, 667
SmoI CTYRAG 4 cut(s) 299, 409, 641, 667
SphI GCATGC 1 cut(s) 77
SseBI AGGCCT 2 cut(s) 305, 665
SsiI CCGC 2 cut(s) 1021, 1073
SspI AATATT 1 cut(s) 33
SspMI CTAG 1 cut(s) 294
SstI GAGCTC 1 cut(s) 238
StuI AGGCCT 2 cut(s) 305, 665
StyD4I CCNGG 3 cut(s) 517, 1131, 1316
StyI CCWWGG 3 cut(s) 272, 1257, 1345
TaaI ACNGT 2 cut(s) 756, 1154
TaqI TCGA 5 cut(s) 97, 192, 222, 607, 1469
TauI GCSGC 1 cut(s) 1076
TfiI GAWTC 4 cut(s) 435, 647, 988, 1322
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 4 cut(s) 245, 276, 1005, 1163
TseI GCWGC 4 cut(s) 465, 506, 672, 706
Tsp45I GTSAC 4 cut(s) 245, 276, 1005, 1163
TspDTI ATGAA 4 cut(s) 824, 1262, 1380, 1433
TspGWI ACGGA 2 cut(s) 228, 791
TspRI CASTG 1 cut(s) 759
Vha464I CTTAAG 2 cut(s) 299, 667
VspI ATTAAT 1 cut(s) 1629
XapI RAATTY 2 cut(s) 1226, 1523
XceI RCATGY 3 cut(s) 77, 1006, 1516
XcmI CCANNNNNNNNNTGG 2 cut(s) 1157, 1264
XmiI GTMKAC 1 cut(s) 897
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.