AT5G57700

BNR Asp-box repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001718
Physical Location & Seq
Forward (+)
23374873 .. 23377229
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57700.3

Sequence Viewer

Length: 1059 bp
ATGAAAAGTTCTCAGATGTCAGAAACAGAATTTAAAGTGTTGCTTGAGACATTCACATTTCCTGCTGATTCTGCTCCCTTCAAGAGTTGTCATGCCTCTACCATAGTTGAGGTTGTTAAAGATCATTTCTTGGCTGCGTATTTCGGAGGCACCAGGGAAGGAGCACCTGATGTCAAAATCTGGTTGCAGCATTTCAAGGATGGTCAATGGGATTCACCGGTTATTGTTGATGAAGAGCCAGGAGTTCCAATGTATAACCCTGTCTTGTTCAAACTTCCATCTCATGAGCTCTTATTGTTCTACAAAATCGGCCAGGAGGTTCAAAAATGGAGTGGTTGCATGAAACGATCATATGATAAAGGTATAACTTGGACTGAAAGAGAACAGCTTCCTCCTGGGATTCTCGGTCCTATCAAAAACAAGCCCATTTTGCTTGAAGACGGTACTCTCCTTTGCGGATCATCTGTTGAGAGTTGGAATTCTTGGGGAGCATGGATGGAGGTCACTTCAGATGCGGGTAGAACATGGAGAAAGAAAGGGCCAATATACATTCAAGGCAAGAGTCTTAGCGTGATCCAACCAGTTCCATACCAAACCGCAGCTGGGAACTTACGGATTTTACTCAGATCCTTTACTGGCATTGACAGAATCTGTATCTCAGAGTCTTTGGATGGCGGTGAGAACTGGAGTTTTGCAGTACCAACGGTTCTCCCAAACCCAAATTCAGGTATTGATGGAGTCAAGCTTAAGGATGGTAGGCTAGTGCTTGCTTACAACACAGACTCAAGAGGTGTGCTCAAATTAGGAGTTTCTTTAGACGACGGTGATTCATGGACCGATATTTTAACGTTGGAGGAATCTCCGGGAATGGAGTATTCGTACCCGGCTGTTATACAAGCCGGAGACGGCAATGTCCACGTCACCTATACATATAACAGGACACAAATTAAGCATGTGGTGCTCAAGACTGCGACAGATATCGATTCGAAGCCATACCGACATGGTGAAGCAGGAGGAGGACACGTGAACTTGGATTTGTACGAACCAAACATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BNR_2

Protein Analysis

352

Amino Acids

39.04

Weight (kDa)

5.44

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BNR_2 PF13088 48 - 313 8e-88 BNR repeat-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 911
AccB1I GGYRCC 1 cut(s) 149
AciI CCGC 4 cut(s) 456, 515, 597, 675
AclI AACGTT 1 cut(s) 848
AclWI GGATC 3 cut(s) 466, 568, 621
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 3 cut(s) 29, 478, 721
AcuI CTGAAG 1 cut(s) 492
AcvI CACGTG 1 cut(s) 1024
AfaI GTAC 4 cut(s) 445, 699, 881, 1040
AfiI CCNNNNNNNGG 2 cut(s) 603, 725
AflII CTTAAG 1 cut(s) 746
AflIII ACRYGT 1 cut(s) 1021
AgeI ACCGGT 1 cut(s) 217
AgsI TTSAA 6 cut(s) 82, 196, 271, 323, 437, 554
AjiI CACGTC 1 cut(s) 919
AjnI CCWGG 4 cut(s) 152, 238, 312, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 706, 738
AluBI AGCT 4 cut(s) 289, 388, 602, 745
AluI AGCT 4 cut(s) 289, 388, 602, 745
Alw21I GWGCWC 4 cut(s) 166, 291, 798, 963
Alw26I GTCTC 2 cut(s) 41, 897
AlwI GGATC 3 cut(s) 466, 568, 621
AlwNI CAGNNNCTG 1 cut(s) 651
AoxI GGCC 2 cut(s) 310, 539
ApeKI GCWGC 3 cut(s) 134, 187, 599
ApoI RAATTY 3 cut(s) 29, 478, 721
AseI ATTAAT 1 cut(s) 1053
AsiGI ACCGGT 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 387
AspS9I GGNCC 3 cut(s) 407, 539, 834
AsuC2I CCSGG 2 cut(s) 864, 884
AsuHPI GGTGA 5 cut(s) 207, 689, 836, 913, 1016
AsuII TTCGAA 1 cut(s) 986
AvaII GGWCC 2 cut(s) 407, 834
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 291
BbrPI CACGTG 1 cut(s) 1024
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 4 cut(s) 166, 291, 798, 963
BbvI GCAGC 3 cut(s) 121, 199, 611
BccI CCATC 6 cut(s) 194, 286, 490, 665, 728, 746
BceAI ACGGC 1 cut(s) 922
BciT130I CCWGG 4 cut(s) 154, 240, 314, 396
BcnI CCSGG 2 cut(s) 864, 884
BcoDI GTCTC 2 cut(s) 41, 897
BfaI CTAG 1 cut(s) 761
BfrI CTTAAG 1 cut(s) 746
BisI GCNGC 3 cut(s) 135, 188, 600
BlsI GCNGC 3 cut(s) 136, 189, 601
Bme1390I CCNGG 6 cut(s) 154, 240, 314, 396, 864, 884
Bme18I GGWCC 2 cut(s) 407, 834
BmgBI CACGTC 1 cut(s) 919
BmgT120I GGNCC 3 cut(s) 407, 539, 834
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 6 cut(s) 154, 240, 314, 396, 864, 884
BmsI GCATC 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 444
BplI GAGNNNNNCTC 2 cut(s) 780, 812
BpmI CTGGAG 1 cut(s) 706
Bpu14I TTCGAA 1 cut(s) 986
BpuEI CTTGAG 3 cut(s) 65, 769, 947
BpuMI CCSGG 2 cut(s) 864, 884
Bsa29I ATCGAT 1 cut(s) 981
BsaAI YACGTR 1 cut(s) 1024
BsaJI CCNNGG 2 cut(s) 153, 395
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 4 cut(s) 863, 893, 1008, 1038
Bsc4I CCNNNNNNNGG 2 cut(s) 603, 725
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 3 cut(s) 581, 640, 689
Bse3DI GCAATG 1 cut(s) 916
BseBI CCWGG 4 cut(s) 154, 240, 314, 396
BseCI ATCGAT 1 cut(s) 981
BseDI CCNNGG 2 cut(s) 153, 395
BseGI GGATG 4 cut(s) 205, 501, 676, 757
BseLI CCNNNNNNNGG 2 cut(s) 603, 725
BseMI GCAATG 1 cut(s) 916
BseMII CTCAG 3 cut(s) 26, 637, 672
BseNI ACTGG 3 cut(s) 581, 640, 689
BseRI GAGGAG 1 cut(s) 1029
BseXI GCAGC 3 cut(s) 121, 199, 611
BseYI CCCAGC 1 cut(s) 602
BshFI GGCC 2 cut(s) 312, 541
BshNI GGYRCC 1 cut(s) 149
BshTI ACCGGT 1 cut(s) 217
BshVI ATCGAT 1 cut(s) 981
BsiHKAI GWGCWC 4 cut(s) 166, 291, 798, 963
BsiSI CCGG 4 cut(s) 218, 863, 884, 900
BslI CCNNNNNNNGG 2 cut(s) 603, 725
BsmAI GTCTC 2 cut(s) 41, 897
BsmBI CGTCTC 1 cut(s) 897
BsnI GGCC 2 cut(s) 312, 541
Bsp119I TTCGAA 1 cut(s) 986
Bsp1286I GDGCHC 4 cut(s) 166, 291, 798, 963
Bsp143I GATC 5 cut(s) 121, 347, 458, 573, 626
BspACI CCGC 4 cut(s) 456, 515, 597, 675
BspANI GGCC 2 cut(s) 312, 541
BspCNI CTCAG 3 cut(s) 25, 636, 671
BspDI ATCGAT 1 cut(s) 981
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 3 cut(s) 466, 568, 621
BspQI GCTCTTC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 986
BspT107I GGYRCC 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 746
BsrDI GCAATG 1 cut(s) 916
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 3 cut(s) 581, 640, 689
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 153, 395
BssMI GATC 5 cut(s) 121, 347, 458, 573, 626
Bst2UI CCWGG 4 cut(s) 154, 240, 314, 396
Bst4CI ACNGT 3 cut(s) 443, 706, 824
Bst6I CTCTTC 1 cut(s) 228
BstAFI CTTAAG 1 cut(s) 746
BstAPI GCANNNNNTGC 1 cut(s) 958
BstBAI YACGTR 1 cut(s) 1024
BstBI TTCGAA 1 cut(s) 986
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 4 cut(s) 12, 566, 623, 658
BstF5I GGATG 4 cut(s) 205, 501, 676, 757
BstKTI GATC 5 cut(s) 124, 350, 461, 576, 629
BstMAI GTCTC 2 cut(s) 41, 897
BstMBI GATC 5 cut(s) 121, 347, 458, 573, 626
BstMWI GCNNNNNNNGC 3 cut(s) 71, 430, 958
BstNI CCWGG 4 cut(s) 154, 240, 314, 396
BstNSI RCATGY 1 cut(s) 956
BstSCI CCNGG 6 cut(s) 152, 238, 312, 394, 862, 882
BstV1I GCAGC 3 cut(s) 121, 199, 611
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 626
BstYI RGATCY 1 cut(s) 626
Bsu15I ATCGAT 1 cut(s) 981
BsuRI GGCC 2 cut(s) 312, 541
BsuTUI ATCGAT 1 cut(s) 981
BtrI CACGTC 1 cut(s) 919
BtsCI GGATG 4 cut(s) 205, 501, 676, 757
Cac8I GCNNGC 1 cut(s) 768
CaiI CAGNNNCTG 1 cut(s) 651
CciI TCATGA 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 3 cut(s) 407, 539, 834
ClaI ATCGAT 1 cut(s) 981
Csp6I GTAC 4 cut(s) 444, 698, 880, 1039
CspAI ACCGGT 1 cut(s) 217
CviAII CATG 8 cut(s) 92, 284, 340, 492, 525, 831, 953, 1001
CviQI GTAC 4 cut(s) 444, 698, 880, 1039
DdeI CTNAG 4 cut(s) 12, 566, 623, 658
DpnI GATC 5 cut(s) 123, 349, 460, 575, 628
DpnII GATC 5 cut(s) 121, 347, 458, 573, 626
DraI TTTAAA 1 cut(s) 34
DrdI GACNNNNNNGTC 1 cut(s) 911
DseDI GACNNNNNNGTC 1 cut(s) 911
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 291
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 2 cut(s) 407, 834
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 492
Eco72I CACGTG 1 cut(s) 1024
EcoICRI GAGCTC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 4 cut(s) 152, 238, 312, 394
EcoRV GATATC 1 cut(s) 979
EcoT38I GRGCYC 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 897
FaeI CATG 8 cut(s) 95, 287, 343, 495, 528, 834, 956, 1004
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 8 cut(s) 91, 283, 339, 491, 524, 830, 952, 1000
FauI CCCGC 1 cut(s) 508
FauNDI CATATG 1 cut(s) 352
Fnu4HI GCNGC 3 cut(s) 135, 188, 600
FokI GGATG 4 cut(s) 212, 508, 683, 764
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 3 cut(s) 135, 188, 600
FspBI CTAG 1 cut(s) 761
GluI GCNGC 3 cut(s) 135, 188, 600
GsaI CCCAGC 1 cut(s) 606
GsuI CTGGAG 1 cut(s) 706
HaeIII GGCC 2 cut(s) 312, 541
HapII CCGG 4 cut(s) 218, 863, 884, 900
Hin1II CATG 8 cut(s) 95, 287, 343, 495, 528, 834, 956, 1004
HindIII AAGCTT 1 cut(s) 743
HpaII CCGG 4 cut(s) 218, 863, 884, 900
HphI GGTGA 5 cut(s) 207, 689, 836, 913, 1016
Hpy166II GTNNAC 2 cut(s) 916, 1027
Hpy188I TCNGA 6 cut(s) 15, 22, 146, 511, 626, 661
Hpy188III TCNNGA 4 cut(s) 82, 284, 786, 964
Hpy8I GTNNAC 2 cut(s) 916, 1027
Hpy99I CGWCG 1 cut(s) 824
HpyAV CCTTC 2 cut(s) 88, 152
HpyCH4III ACNGT 3 cut(s) 443, 706, 824
HpyCH4IV ACGT 3 cut(s) 848, 918, 1023
HpyCH4V TGCA 3 cut(s) 187, 339, 695
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 430, 958
HpyF3I CTNAG 4 cut(s) 12, 566, 623, 658
HpySE526I ACGT 3 cut(s) 848, 918, 1023
Hsp92II CATG 8 cut(s) 95, 287, 343, 495, 528, 834, 956, 1004
Kzo9I GATC 5 cut(s) 121, 347, 458, 573, 626
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 3 cut(s) 79, 161, 488
Lsp1109I GCAGC 3 cut(s) 121, 199, 611
LweI GCATC 1 cut(s) 502
MaeI CTAG 1 cut(s) 761
MaeII ACGT 3 cut(s) 848, 918, 1023
MaeIII GTNAC 2 cut(s) 502, 919
MalI GATC 5 cut(s) 123, 349, 460, 575, 628
MboI GATC 5 cut(s) 121, 347, 458, 573, 626
MboII GAAGA 2 cut(s) 245, 449
MflI RGATCY 1 cut(s) 626
MhlI GDGCHC 4 cut(s) 166, 291, 798, 963
MluCI AATT 6 cut(s) 29, 478, 721, 800, 945, 1054
MlyI GAGTC 4 cut(s) 571, 671, 747, 776
MmeI TCCRAC 3 cut(s) 455, 601, 831
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 7 cut(s) 33, 117, 747, 845, 948, 1053, 1057
MspA1I CMGCKG 1 cut(s) 602
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 4 cut(s) 218, 863, 884, 900
MspR9I CCNGG 6 cut(s) 154, 240, 314, 396, 864, 884
MvaI CCWGG 4 cut(s) 154, 240, 314, 396
MwoI GCNNNNNNNGC 3 cut(s) 71, 430, 958
NciI CCSGG 2 cut(s) 864, 884
NdeI CATATG 1 cut(s) 352
NdeII GATC 5 cut(s) 121, 347, 458, 573, 626
NlaIII CATG 8 cut(s) 95, 287, 343, 495, 528, 834, 956, 1004
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 2 cut(s) 502, 919
NspI RCATGY 1 cut(s) 956
NspV TTCGAA 1 cut(s) 986
PacI TTAATTAA 1 cut(s) 1057
PagI TCATGA 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 7 cut(s) 68, 212, 400, 648, 827, 857, 983
PfoI TCCNGGA 1 cut(s) 862
PinAI ACCGGT 1 cut(s) 217
PkrI GCNGC 3 cut(s) 136, 189, 601
PleI GAGTC 4 cut(s) 570, 670, 746, 776
PmaCI CACGTG 1 cut(s) 1024
PmlI CACGTG 1 cut(s) 1024
PpsI GAGTC 4 cut(s) 570, 670, 746, 776
Ppu21I YACGTR 1 cut(s) 1024
PshBI ATTAAT 1 cut(s) 1053
Psp124BI GAGCTC 1 cut(s) 291
Psp1406I AACGTT 1 cut(s) 848
Psp6I CCWGG 4 cut(s) 152, 238, 312, 394
PspCI CACGTG 1 cut(s) 1024
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 4 cut(s) 152, 238, 312, 394
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 3 cut(s) 407, 539, 834
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PstNI CAGNNNCTG 1 cut(s) 651
PsuI RGATCY 1 cut(s) 626
PvuII CAGCTG 1 cut(s) 602
RsaI GTAC 4 cut(s) 445, 699, 881, 1040
RsaNI GTAC 4 cut(s) 444, 698, 880, 1039
SacI GAGCTC 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 7 cut(s) 33, 117, 747, 845, 948, 1053, 1057
SatI GCNGC 3 cut(s) 135, 188, 600
Sau3AI GATC 5 cut(s) 121, 347, 458, 573, 626
Sau96I GGNCC 3 cut(s) 407, 539, 834
SchI GAGTC 4 cut(s) 571, 671, 747, 776
ScrFI CCNGG 6 cut(s) 154, 240, 314, 396, 864, 884
SduI GDGCHC 4 cut(s) 166, 291, 798, 963
SfaNI GCATC 1 cut(s) 502
SfuI TTCGAA 1 cut(s) 986
SinI GGWCC 2 cut(s) 407, 834
SmlI CTYRAG 4 cut(s) 44, 746, 784, 962
SmoI CTYRAG 4 cut(s) 44, 746, 784, 962
Sse9I AATT 6 cut(s) 29, 478, 721, 800, 945, 1054
SsiI CCGC 4 cut(s) 456, 515, 597, 675
SspMI CTAG 1 cut(s) 761
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 6 cut(s) 152, 238, 312, 394, 862, 882
TaaI ACNGT 3 cut(s) 443, 706, 824
TaiI ACGT 3 cut(s) 851, 921, 1026
TaqI TCGA 2 cut(s) 981, 986
TaqII GACCGA 2 cut(s) 395, 851
TasI AATT 6 cut(s) 29, 478, 721, 800, 945, 1054
TfiI GAWTC 7 cut(s) 68, 212, 400, 648, 827, 857, 983
Tru1I TTAA 7 cut(s) 33, 117, 747, 845, 948, 1053, 1057
Tru9I TTAA 7 cut(s) 33, 117, 747, 845, 948, 1053, 1057
TseFI GTSAC 2 cut(s) 502, 919
TseI GCWGC 3 cut(s) 134, 187, 599
Tsp45I GTSAC 2 cut(s) 502, 919
TspDTI ATGAA 4 cut(s) 17, 246, 356, 819
TspGWI ACGGA 1 cut(s) 628
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 2 cut(s) 407, 834
VspI ATTAAT 1 cut(s) 1053
XapI RAATTY 3 cut(s) 29, 478, 721
XceI RCATGY 1 cut(s) 956
XcmI CCANNNNNNNNNTGG 1 cut(s) 599
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.