Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001718

Physical Location & Seq

Genomic Coordinates Reverse (-)

24423727 .. 24428715

Gene Structure 4989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCAACTGCATTAGGAACTCTCTCTCTCTCATATAATTGTTTTCAAGTAATATCCATGAAGAATGTAGAAATGTGGAAATCAGTGAGAAGCATTGCGTTGCTTATGTCGCTGTCTCTGTTTCTGGGTTTGCTATTGACCATGCTCCATGTCTCTGATCTGCATAACCCACTCTCTAGATTCCGCAGCAATTTCTCCTTTTCCCCTCTTCTCTTCAATTCCAGTCACCACTTGCTTCACCCTTTTCGTGTCTCTCCTATCAGAAAGTTGGATAGAATATTTGCAGAAACCTTAATGTCTGCTCCCCCAAGAATAAATATGAGGAAGGACCGTTTTCTCGAGGGGCCTGTGTTACAGGAATATACATTTGCTGCAAATTCTGTTCCTTTCAATAGCTGTCATGCTTCTACCATTGTTGAGGTCGATAAAGATCATTTTTTGGTTGCCTATTTTGGAGGGTCATCAGAGGGAGCACCTGATGTGAAAATTTGGTTGCAGACTTGCAAGAATGGCTATTGGCAGCCGCCTATCATTGCTGATGAACAACCAGATGTTCCAATGTGGAACCCCGTGTTATTCAAACTTCCATCAGAGGAGCTGCTGTTGTTCTATAAAATAGGACAAGAGGTTCAAAAATGGAGTGGATGCTTGAAGAGGTCATATGATAAAGGTGTTACCTGGACAGAAAGAGAACAACTTCCTCCTGGTATATTAGGACCAATAAAGAATAAGCCTATCCTGCTGGAAAATGGAGTTTTGCTCTGTGGATCCTCCGTTGAAAGTTGGAACTCTTGGGGGGCATGGGTGGAGGTCGCAACGGATTCTCTTAGGTCTTGGAGAAAGTATGGTCCTATTTACATTGAAAATGAAACTCTTAGTGTGATTCAACCAGTTCCTTACCAGACTGCAAAAGGGACCTTGCGCCTTTTAATGCGATCCTTTGATCACATTGGTAGAGTTTGTATCTCAGAATCCCACGATGGTGGCCAAAACTGGGAATATGCAAAACCTACTGATCTCCCCAATCCAAACTCAGGTATTGATGGTGTAAAGCTAAGAGATGGCTCTATTTTACTTGCATATAATACAATCTCAAGGGGTGTACTTAAAGTTGCGCTCTCCGATGATGATGGGGACTCATGGCATGATGCCGTGACATTGGAGGAGGATTTGGACATGGAGTTCTCATATCCAGCTGTTATTCAAGCTAGTGATGGGTGTGTTCACATAACTTACACTTATAATAGGACGCAAGTTAAGCATGTTGTCCTTAAACCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BNR_2

Protein Analysis

427

Amino Acids

48.16

Weight (kDa)

6.19

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BNR_2	PF13088	145 - 410	1.4e-82	BNR repeat-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57700 AT5G57700 AT5G57700 AT5G57700 AT5G57700
fragaria_vesca	FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810
malus_domestica	MD13G1261500.v1.1
prunus_persica	Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1
pyrus_communis	pycom13g24920
rosa_chinensis	RchiOBHm_Chr4g0404611
rosa_laevigata	RLG00000008919
rosa_multiflora	Rmu_sc0002699.1_g000016
rosa_roxburghii	Rroxscaffold_5G00348760
rosa_rugosa	Rorug04G0047800 Rorug04G0047900.1
rosa_samantha	Rh4AG123900 Rh4BG117600 Rh4CG132000 Rh4DG116800
rosa_wichuraiana	Rw4G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1242
AciI	CCGC	2 cut(s)	184, 524
AclWI	GGATC	3 cut(s)	762, 775, 930
AcoI	YGGCCR	1 cut(s)	985
AcsI	RAATTY	2 cut(s)	376, 486
AfaI	GTAC	1 cut(s)	1104
AfiI	CCNNNNNNNGG	2 cut(s)	994, 1034
AjnI	CCWGG	2 cut(s)	677, 703
AleI	CACNNNNGTG	1 cut(s)	981
AloI	GAACNNNNNNTCC	4 cut(s)	612, 644, 1166, 1198
AluBI	AGCT	5 cut(s)	396, 598, 1054, 1196, 1208
AluI	AGCT	5 cut(s)	396, 598, 1054, 1196, 1208
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	3 cut(s)	120, 157, 256
AlwI	GGATC	3 cut(s)	762, 775, 930
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	344, 985
ApeKI	GCWGC	4 cut(s)	186, 371, 520, 598
ApoI	RAATTY	2 cut(s)	376, 486
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	2 cut(s)	924, 1117
AspS9I	GGNCC	5 cut(s)	328, 344, 716, 848, 915
AsuHPI	GGTGA	2 cut(s)	218, 230
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	4 cut(s)	328, 716, 848, 915
BalI	TGGCCA	1 cut(s)	987
BamHI	GGATCC	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	4 cut(s)	198, 358, 532, 585
BccI	CCATC	6 cut(s)	595, 974, 1037, 1055, 1124, 1208
BceAI	ACGGC	1 cut(s)	1136
BciT130I	CCWGG	2 cut(s)	679, 705
BclI	TGATCA	1 cut(s)	943
BcoDI	GTCTC	3 cut(s)	120, 157, 256
BfaI	CTAG	2 cut(s)	177, 1209
BisI	GCNGC	5 cut(s)	187, 372, 521, 524, 599
BlsI	GCNGC	5 cut(s)	188, 373, 522, 525, 600
Bme1390I	CCNGG	2 cut(s)	679, 705
Bme18I	GGWCC	4 cut(s)	328, 716, 848, 915
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	5 cut(s)	328, 344, 716, 848, 915
BmiI	GGNNCC	4 cut(s)	345, 566, 769, 916
BmrFI	CCNGG	2 cut(s)	679, 705
BmrI	ACTGGG	1 cut(s)	1003
BmsI	GCATC	2 cut(s)	635, 1138
BmuI	ACTGGG	1 cut(s)	1003
BplI	GAGNNNNNCTC	2 cut(s)	744, 776
BpuEI	CTTGAG	1 cut(s)	1078
BsaBI	GATNNNNATC	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	2 cut(s)	994, 1034
Bse1I	ACTGG	3 cut(s)	222, 890, 998
Bse3DI	GCAATG	2 cut(s)	93, 531
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	679, 705
BseGI	GGATG	1 cut(s)	650
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	994, 1034
BseMI	GCAATG	2 cut(s)	93, 531
BseMII	CTCAG	2 cut(s)	981, 1047
BseNI	ACTGG	3 cut(s)	222, 890, 998
BseRI	GAGGAG	2 cut(s)	608, 1178
BseXI	GCAGC	4 cut(s)	198, 358, 532, 585
BshFI	GGCC	2 cut(s)	346, 987
BsiHKAI	GWGCWC	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	338
BslFI	GGGAC	2 cut(s)	928, 1148
BslI	CCNNNNNNNGG	2 cut(s)	994, 1034
BsmAI	GTCTC	3 cut(s)	120, 157, 256
BsmFI	GGGAC	2 cut(s)	928, 1148
BsnI	GGCC	2 cut(s)	346, 987
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	6 cut(s)	157, 430, 767, 935, 943, 1015
BspACI	CCGC	2 cut(s)	184, 524
BspANI	GGCC	2 cut(s)	346, 987
BspCNI	CTCAG	2 cut(s)	980, 1046
BspLI	GGNNCC	4 cut(s)	345, 566, 769, 916
BspPI	GGATC	3 cut(s)	762, 775, 930
BsrDI	GCAATG	2 cut(s)	93, 531
BsrI	ACTGG	3 cut(s)	222, 890, 998
BssMI	GATC	6 cut(s)	157, 430, 767, 935, 943, 1015
Bst2UI	CCWGG	2 cut(s)	679, 705
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	3 cut(s)	213, 218, 647
BstDEI	CTNAG	5 cut(s)	827, 875, 967, 1033, 1055
BstF5I	GGATG	1 cut(s)	650
BstHHI	GCGC	2 cut(s)	924, 1117
BstKTI	GATC	6 cut(s)	160, 433, 770, 938, 946, 1018
BstMAI	GTCTC	3 cut(s)	120, 157, 256
BstMBI	GATC	6 cut(s)	157, 430, 767, 935, 943, 1015
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 510, 739, 1258
BstNI	CCWGG	2 cut(s)	679, 705
BstNSI	RCATGY	1 cut(s)	1265
BstSCI	CCNGG	2 cut(s)	677, 703
BstV1I	GCAGC	4 cut(s)	198, 358, 532, 585
BstX2I	RGATCY	1 cut(s)	767
BstXI	CCANNNNNNTGG	1 cut(s)	983
BstYI	RGATCY	1 cut(s)	767
BsuRI	GGCC	2 cut(s)	346, 987
BtsCI	GGATG	1 cut(s)	650
BtsIMutI	CAGTG	1 cut(s)	90
CfoI	GCGC	2 cut(s)	924, 1117
Cfr13I	GGNCC	5 cut(s)	328, 344, 716, 848, 915
CseI	GACGC	1 cut(s)	1258
Csp6I	GTAC	1 cut(s)	1103
CviAII	CATG	9 cut(s)	58, 142, 149, 401, 801, 1140, 1145, 1177, 1262
CviQI	GTAC	1 cut(s)	1103
DdeI	CTNAG	5 cut(s)	827, 875, 967, 1033, 1055
DpnI	GATC	6 cut(s)	159, 432, 769, 937, 945, 1017
DpnII	GATC	6 cut(s)	157, 430, 767, 935, 943, 1015
EaeI	YGGCCR	1 cut(s)	985
Eam1104I	CTCTTC	3 cut(s)	213, 218, 647
EarI	CTCTTC	3 cut(s)	213, 218, 647
Eco47I	GGWCC	4 cut(s)	328, 716, 848, 915
Eco88I	CYCGRG	1 cut(s)	338
EcoO109I	RGGNCCY	2 cut(s)	344, 915
EcoRII	CCWGG	2 cut(s)	677, 703
FaeI	CATG	9 cut(s)	61, 145, 152, 404, 804, 1143, 1148, 1180, 1265
FaqI	GGGAC	2 cut(s)	928, 1148
FatI	CATG	9 cut(s)	57, 141, 148, 400, 800, 1139, 1144, 1176, 1261
FauNDI	CATATG	1 cut(s)	661
FbaI	TGATCA	1 cut(s)	943
Fnu4HI	GCNGC	5 cut(s)	187, 372, 521, 524, 599
FokI	GGATG	1 cut(s)	657
Fsp4HI	GCNGC	5 cut(s)	187, 372, 521, 524, 599
FspBI	CTAG	2 cut(s)	177, 1209
GlaI	GCGC	2 cut(s)	923, 1116
GluI	GCNGC	5 cut(s)	187, 372, 521, 524, 599
HaeIII	GGCC	2 cut(s)	346, 987
HgaI	GACGC	1 cut(s)	1258
HhaI	GCGC	2 cut(s)	924, 1117
Hin1II	CATG	9 cut(s)	61, 145, 152, 404, 804, 1143, 1148, 1180, 1265
Hin6I	GCGC	2 cut(s)	922, 1115
HinP1I	GCGC	2 cut(s)	922, 1115
HinfI	GANTC	5 cut(s)	180, 821, 883, 971, 1136
HphI	GGTGA	2 cut(s)	218, 230
Hpy166II	GTNNAC	2 cut(s)	1103, 1225
Hpy188I	TCNGA	6 cut(s)	157, 263, 466, 592, 970, 1123
Hpy188III	TCNNGA	2 cut(s)	177, 338
Hpy8I	GTNNAC	2 cut(s)	1103, 1225
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	9 cut(s)	11, 163, 284, 374, 496, 504, 908, 1004, 1079
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 510, 739, 1258
HpyF3I	CTNAG	5 cut(s)	827, 875, 967, 1033, 1055
Hsp92II	CATG	9 cut(s)	61, 145, 152, 404, 804, 1143, 1148, 1180, 1265
HspAI	GCGC	2 cut(s)	922, 1115
Ksp22I	TGATCA	1 cut(s)	943
Kzo9I	GATC	6 cut(s)	157, 430, 767, 935, 943, 1015
LmnI	GCTCC	4 cut(s)	150, 307, 470, 595
Lsp1109I	GCAGC	4 cut(s)	198, 358, 532, 585
LweI	GCATC	2 cut(s)	635, 1138
MaeI	CTAG	2 cut(s)	177, 1209
MaeIII	GTNAC	4 cut(s)	224, 351, 673, 1153
MalI	GATC	6 cut(s)	159, 432, 769, 937, 945, 1017
MboI	GATC	6 cut(s)	157, 430, 767, 935, 943, 1015
MboII	GAAGA	4 cut(s)	73, 200, 205, 664
MflI	RGATCY	1 cut(s)	767
MhlI	GDGCHC	1 cut(s)	475
MlsI	TGGCCA	1 cut(s)	987
MluCI	AATT	6 cut(s)	37, 190, 217, 376, 486, 1279
MluNI	TGGCCA	1 cut(s)	987
MlyI	GAGTC	1 cut(s)	1130
MmeI	TCCRAC	2 cut(s)	249, 764
Mox20I	TGGCCA	1 cut(s)	987
MroXI	GAANNNNTTC	1 cut(s)	696
MscI	TGGCCA	1 cut(s)	987
MseI	TTAA	5 cut(s)	293, 929, 1107, 1257, 1272
MslI	CAYNNNNRTG	1 cut(s)	981
Msp20I	TGGCCA	1 cut(s)	987
MspA1I	CMGCKG	1 cut(s)	1196
MspR9I	CCNGG	2 cut(s)	679, 705
MvaI	CCWGG	2 cut(s)	679, 705
MwoI	GCNNNNNNNGC	4 cut(s)	109, 510, 739, 1258
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	6 cut(s)	157, 430, 767, 935, 943, 1015
NlaIII	CATG	9 cut(s)	61, 145, 152, 404, 804, 1143, 1148, 1180, 1265
NlaIV	GGNNCC	4 cut(s)	345, 566, 769, 916
NmuCI	GTSAC	2 cut(s)	224, 1153
NspI	RCATGY	1 cut(s)	1265
OliI	CACNNNNGTG	1 cut(s)	981
PaeR7I	CTCGAG	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	4 cut(s)	180, 821, 883, 971
PkrI	GCNGC	5 cut(s)	188, 373, 522, 525, 600
PleI	GAGTC	1 cut(s)	1130
PpsI	GAGTC	1 cut(s)	1130
PpuMI	RGGWCCY	1 cut(s)	915
PsiI	TTATAA	1 cut(s)	1242
Psp5II	RGGWCCY	1 cut(s)	915
Psp6I	CCWGG	2 cut(s)	677, 703
PspGI	CCWGG	2 cut(s)	677, 703
PspN4I	GGNNCC	4 cut(s)	345, 566, 769, 916
PspPI	GGNCC	5 cut(s)	328, 344, 716, 848, 915
PspPPI	RGGWCCY	1 cut(s)	915
PsuI	RGATCY	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	1196
RsaI	GTAC	1 cut(s)	1104
RsaNI	GTAC	1 cut(s)	1103
RseI	CAYNNNNRTG	1 cut(s)	981
SaqAI	TTAA	5 cut(s)	293, 929, 1107, 1257, 1272
SatI	GCNGC	5 cut(s)	187, 372, 521, 524, 599
Sau3AI	GATC	6 cut(s)	157, 430, 767, 935, 943, 1015
Sau96I	GGNCC	5 cut(s)	328, 344, 716, 848, 915
SchI	GAGTC	1 cut(s)	1130
ScrFI	CCNGG	2 cut(s)	679, 705
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	2 cut(s)	635, 1138
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	4 cut(s)	328, 716, 848, 915
SlaI	CTCGAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	981
SmlI	CTYRAG	2 cut(s)	338, 1093
SmoI	CTYRAG	2 cut(s)	338, 1093
Sse9I	AATT	6 cut(s)	37, 190, 217, 376, 486, 1279
SsiI	CCGC	2 cut(s)	184, 524
SspI	AATATT	1 cut(s)	279
SspMI	CTAG	2 cut(s)	177, 1209
StyD4I	CCNGG	2 cut(s)	677, 703
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	2 cut(s)	339, 423
TasI	AATT	6 cut(s)	37, 190, 217, 376, 486, 1279
TatI	WGTACW	1 cut(s)	1102
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	4 cut(s)	180, 821, 883, 971
Tru1I	TTAA	5 cut(s)	293, 929, 1107, 1257, 1272
Tru9I	TTAA	5 cut(s)	293, 929, 1107, 1257, 1272
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	2 cut(s)	224, 1153
TseI	GCWGC	4 cut(s)	186, 371, 520, 598
Tsp45I	GTSAC	2 cut(s)	224, 1153
TspDTI	ATGAA	3 cut(s)	74, 555, 882
TspGWI	ACGGA	2 cut(s)	763, 833
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	4 cut(s)	328, 716, 848, 915
XapI	RAATTY	2 cut(s)	376, 486
XbaI	TCTAGA	1 cut(s)	176
XceI	RCATGY	1 cut(s)	1265
XhoI	CTCGAG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	2 cut(s)	177, 1209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.