Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001718

Physical Location & Seq

Genomic Coordinates Forward (+)

42612821 .. 42616710

Gene Structure 3890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008919

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTCGCTGTCTCTGTTTCTGGGTTTGCTATTGACCGTGCTCCATGTCTCTGATCTGCATAACCCACTCCCTAGATTCCGCACCAATTTCTCCTTTTCCCCTCTTCTCTTCAATTCCAGTCACCACCTGCTTCACCCTTTTCATGTCTCTCCCATCAGAAAGTTAGATAGAATATTTGCAGAAACCTTAATGTCGTCTCCCCCAAGGATAAATTTGAGGAAGGACCGTTTTCTCGAGGGGCCTGTGTTACAGGAATATACATTTGCTGCAAATTCTGTTCCTTTCAATAGCTGTCATGCTTCTACCATTGTTGAGGTTGATAAAGATCATTTTTTGGTTGCCTATTTTGGAGGGTCATCAGAGGGAGCACCTGATGTGAAAATTTGGTTGCAGACTTGCAAGAATGGCTATTGGCAGCCGCCTATCATTGCTGATGAACAACCAGATGTTCCAATGTGGAACCCCGTGTTATTCAAACTTCCATCAGAGGAGCTACTGTTGTTCTATAAAATAGGACAAGAGGTTCAAAAATGGAGTGGATGCTTGAAGAGGTCATATGATAAAGGTGTTACCTGGACAGAAAGAGAACAACTTCCTCCTGGTATATTAGGGCCAATAAAGAATAAGCCTATCCTGCTGGAAAATGGAGTTTTGCTTTGTGGATCCTCCGTTGAAAGTTGGAACTCTTGGGGGGCATGGGTGGAGGTCGCAACAGATTCTCTTAGGTCTTGGAGAAAGTATGGTCCTATTTACATTGAAAATGAAACTCTTAGTGTGATTCAGCCAGTTCCATACCAGACTGCAAAAGGGACCTTGCGCCTTTTAATGCGATCCTTTGATCACATTGGTAGAGTTTGTATCTCAGAATCCCACGATGGTGGCCAAAACTGGGAATATGCAAAACCTACTGATCTCCCCAATCCAAACTCAGGTATTGATGGTGTAAAGCTAAGAGATGGCTCTATTTTACTTGCATATAATACAATCTCAAGGGGTGTACTTAAAGTTGCGCTCTCCGATGATGATGGACGCAAGTTAAGCATGTTGTCCTTAAACCAAATTGATGCAGTGGATGAGAACAAAGGGAACAAGGATACAGCCAAGATTAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BNR_2

Protein Analysis

372

Amino Acids

41.73

Weight (kDa)

6.56

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BNR_2	PF13088	110 - 345	1.1e-69	BNR repeat-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57700 AT5G57700 AT5G57700 AT5G57700 AT5G57700
fragaria_vesca	FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810
malus_domestica	MD13G1261500.v1.1
prunus_persica	Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1
pyrus_communis	pycom13g24920
rosa_chinensis	RchiOBHm_Chr4g0404611
rosa_laevigata	RLG00000008919
rosa_multiflora	Rmu_sc0002699.1_g000016
rosa_roxburghii	Rroxscaffold_5G00348760
rosa_rugosa	Rorug04G0047800 Rorug04G0047900.1
rosa_samantha	Rh4AG123900 Rh4BG117600 Rh4CG132000 Rh4DG116800
rosa_wichuraiana	Rw4G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	135
Acc36I	ACCTGC	1 cut(s)	135
AciI	CCGC	2 cut(s)	79, 419
AclWI	GGATC	3 cut(s)	657, 670, 825
AcoI	YGGCCR	1 cut(s)	880
AcsI	RAATTY	3 cut(s)	211, 271, 381
AfaI	GTAC	1 cut(s)	999
AfiI	CCNNNNNNNGG	2 cut(s)	889, 929
AgsI	TTSAA	7 cut(s)	112, 286, 475, 527, 547, 674, 758
AjnI	CCWGG	2 cut(s)	572, 598
AleI	CACNNNNGTG	1 cut(s)	876
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	3 cut(s)	291, 493, 949
AluI	AGCT	3 cut(s)	291, 493, 949
Alw21I	GWGCWC	2 cut(s)	42, 370
Alw26I	GTCTC	4 cut(s)	15, 52, 151, 201
AlwI	GGATC	3 cut(s)	657, 670, 825
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	3 cut(s)	239, 611, 880
ApeKI	GCWGC	2 cut(s)	266, 415
ApoI	RAATTY	3 cut(s)	211, 271, 381
AseI	ATTAAT	1 cut(s)	1107
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	2 cut(s)	819, 1012
AspS9I	GGNCC	5 cut(s)	223, 239, 611, 743, 810
AsuHPI	GGTGA	2 cut(s)	113, 125
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	3 cut(s)	223, 743, 810
BalI	TGGCCA	1 cut(s)	882
BamHI	GGATCC	1 cut(s)	662
Bbv12I	GWGCWC	2 cut(s)	42, 370
BbvI	GCAGC	2 cut(s)	253, 427
BccI	CCATC	6 cut(s)	161, 490, 869, 932, 950, 1019
BciT130I	CCWGG	2 cut(s)	574, 600
BciVI	GTATCC	1 cut(s)	1087
BclI	TGATCA	1 cut(s)	838
BcoDI	GTCTC	4 cut(s)	15, 52, 151, 201
BfaI	CTAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	1087
BisI	GCNGC	3 cut(s)	267, 416, 419
BlsI	GCNGC	3 cut(s)	268, 417, 420
Bme1390I	CCNGG	2 cut(s)	574, 600
Bme18I	GGWCC	3 cut(s)	223, 743, 810
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	5 cut(s)	223, 239, 611, 743, 810
BmiI	GGNNCC	4 cut(s)	240, 461, 664, 811
BmrFI	CCNGG	2 cut(s)	574, 600
BmrI	ACTGGG	1 cut(s)	898
BmsI	GCATC	2 cut(s)	530, 1054
BmuI	ACTGGG	1 cut(s)	898
BpuEI	CTTGAG	1 cut(s)	973
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	889, 929
Bse1I	ACTGG	3 cut(s)	117, 785, 893
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	574, 600
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	2 cut(s)	545, 1078
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	889, 929
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	876, 942
BseNI	ACTGG	3 cut(s)	117, 785, 893
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	253, 427
BshFI	GGCC	3 cut(s)	241, 613, 882
BsiHKAI	GWGCWC	2 cut(s)	42, 370
BsiHKCI	CYCGRG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	823
BslI	CCNNNNNNNGG	2 cut(s)	889, 929
BsmAI	GTCTC	4 cut(s)	15, 52, 151, 201
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	823
BsnI	GGCC	3 cut(s)	241, 613, 882
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	42, 370
Bsp143I	GATC	6 cut(s)	52, 325, 662, 830, 838, 910
BspACI	CCGC	2 cut(s)	79, 419
BspANI	GGCC	3 cut(s)	241, 613, 882
BspCNI	CTCAG	2 cut(s)	875, 941
BspLI	GGNNCC	4 cut(s)	240, 461, 664, 811
BspMI	ACCTGC	1 cut(s)	135
BspPI	GGATC	3 cut(s)	657, 670, 825
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	3 cut(s)	117, 785, 893
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	6 cut(s)	52, 325, 662, 830, 838, 910
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	574, 600
Bst4CI	ACNGT	3 cut(s)	37, 227, 498
Bst6I	CTCTTC	3 cut(s)	108, 113, 542
BstDEI	CTNAG	5 cut(s)	722, 770, 862, 928, 950
BstF5I	GGATG	2 cut(s)	545, 1078
BstHHI	GCGC	2 cut(s)	819, 1012
BstKTI	GATC	6 cut(s)	55, 328, 665, 833, 841, 913
BstMAI	GTCTC	4 cut(s)	15, 52, 151, 201
BstMBI	GATC	6 cut(s)	52, 325, 662, 830, 838, 910
BstMWI	GCNNNNNNNGC	3 cut(s)	405, 634, 1038
BstNI	CCWGG	2 cut(s)	574, 600
BstNSI	RCATGY	1 cut(s)	1045
BstSCI	CCNGG	2 cut(s)	572, 598
BstV1I	GCAGC	2 cut(s)	253, 427
BstX2I	RGATCY	1 cut(s)	662
BstXI	CCANNNNNNTGG	1 cut(s)	878
BstYI	RGATCY	1 cut(s)	662
BsuI	GTATCC	1 cut(s)	1087
BsuRI	GGCC	3 cut(s)	241, 613, 882
BtsCI	GGATG	2 cut(s)	545, 1078
BtsI	GCAGTG	1 cut(s)	1074
BtsIMutI	CAGTG	1 cut(s)	1074
BveI	ACCTGC	1 cut(s)	135
CfoI	GCGC	2 cut(s)	819, 1012
Cfr13I	GGNCC	5 cut(s)	223, 239, 611, 743, 810
CseI	GACGC	1 cut(s)	1038
Csp6I	GTAC	1 cut(s)	998
CviAII	CATG	5 cut(s)	44, 143, 296, 696, 1042
CviQI	GTAC	1 cut(s)	998
DdeI	CTNAG	5 cut(s)	722, 770, 862, 928, 950
DpnI	GATC	6 cut(s)	54, 327, 664, 832, 840, 912
DpnII	GATC	6 cut(s)	52, 325, 662, 830, 838, 910
EaeI	YGGCCR	1 cut(s)	880
Eam1104I	CTCTTC	3 cut(s)	108, 113, 542
EarI	CTCTTC	3 cut(s)	108, 113, 542
Eco130I	CCWWGG	1 cut(s)	203
Eco47I	GGWCC	3 cut(s)	223, 743, 810
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	2 cut(s)	239, 810
EcoRII	CCWGG	2 cut(s)	572, 598
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	5 cut(s)	47, 146, 299, 699, 1045
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	5 cut(s)	43, 142, 295, 695, 1041
FauNDI	CATATG	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	3 cut(s)	267, 416, 419
FokI	GGATG	2 cut(s)	552, 1085
Fsp4HI	GCNGC	3 cut(s)	267, 416, 419
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	2 cut(s)	818, 1011
GluI	GCNGC	3 cut(s)	267, 416, 419
HaeIII	GGCC	3 cut(s)	241, 613, 882
HgaI	GACGC	1 cut(s)	1038
HhaI	GCGC	2 cut(s)	819, 1012
Hin1II	CATG	5 cut(s)	47, 146, 299, 699, 1045
Hin6I	GCGC	2 cut(s)	817, 1010
HinP1I	GCGC	2 cut(s)	817, 1010
HinfI	GANTC	4 cut(s)	75, 716, 778, 866
HphI	GGTGA	2 cut(s)	113, 125
Hpy166II	GTNNAC	1 cut(s)	998
Hpy188I	TCNGA	6 cut(s)	52, 158, 361, 487, 865, 1018
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	998
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	3 cut(s)	37, 227, 498
HpyCH4V	TGCA	9 cut(s)	58, 179, 269, 391, 399, 803, 899, 974, 1067
HpyF10VI	GCNNNNNNNGC	3 cut(s)	405, 634, 1038
HpyF3I	CTNAG	5 cut(s)	722, 770, 862, 928, 950
Hsp92II	CATG	5 cut(s)	47, 146, 299, 699, 1045
HspAI	GCGC	2 cut(s)	817, 1010
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	6 cut(s)	52, 325, 662, 830, 838, 910
LmnI	GCTCC	3 cut(s)	45, 365, 490
Lsp1109I	GCAGC	2 cut(s)	253, 427
LweI	GCATC	2 cut(s)	530, 1054
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	119, 246, 568
MalI	GATC	6 cut(s)	54, 327, 664, 832, 840, 912
MboI	GATC	6 cut(s)	52, 325, 662, 830, 838, 910
MboII	GAAGA	3 cut(s)	95, 100, 559
MflI	RGATCY	1 cut(s)	662
MhlI	GDGCHC	2 cut(s)	42, 370
MlsI	TGGCCA	1 cut(s)	882
MluCI	AATT	6 cut(s)	85, 112, 211, 271, 381, 1059
MluNI	TGGCCA	1 cut(s)	882
MmeI	TCCRAC	1 cut(s)	659
Mox20I	TGGCCA	1 cut(s)	882
MroXI	GAANNNNTTC	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	882
MseI	TTAA	6 cut(s)	188, 824, 1002, 1037, 1052, 1107
MslI	CAYNNNNRTG	1 cut(s)	876
Msp20I	TGGCCA	1 cut(s)	882
MspR9I	CCNGG	2 cut(s)	574, 600
MvaI	CCWGG	2 cut(s)	574, 600
MwoI	GCNNNNNNNGC	3 cut(s)	405, 634, 1038
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	6 cut(s)	52, 325, 662, 830, 838, 910
NlaIII	CATG	5 cut(s)	47, 146, 299, 699, 1045
NlaIV	GGNNCC	4 cut(s)	240, 461, 664, 811
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	1045
OliI	CACNNNNGTG	1 cut(s)	876
PaeR7I	CTCGAG	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	4 cut(s)	75, 716, 778, 866
PkrI	GCNGC	3 cut(s)	268, 417, 420
PpuMI	RGGWCCY	1 cut(s)	810
PshBI	ATTAAT	1 cut(s)	1107
Psp5II	RGGWCCY	1 cut(s)	810
Psp6I	CCWGG	2 cut(s)	572, 598
PspGI	CCWGG	2 cut(s)	572, 598
PspN4I	GGNNCC	4 cut(s)	240, 461, 664, 811
PspPI	GGNCC	5 cut(s)	223, 239, 611, 743, 810
PspPPI	RGGWCCY	1 cut(s)	810
PsuI	RGATCY	1 cut(s)	662
RsaI	GTAC	1 cut(s)	999
RsaNI	GTAC	1 cut(s)	998
RseI	CAYNNNNRTG	1 cut(s)	876
SaqAI	TTAA	6 cut(s)	188, 824, 1002, 1037, 1052, 1107
SatI	GCNGC	3 cut(s)	267, 416, 419
Sau3AI	GATC	6 cut(s)	52, 325, 662, 830, 838, 910
Sau96I	GGNCC	5 cut(s)	223, 239, 611, 743, 810
ScrFI	CCNGG	2 cut(s)	574, 600
SduI	GDGCHC	2 cut(s)	42, 370
SfaNI	GCATC	2 cut(s)	530, 1054
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	3 cut(s)	223, 743, 810
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	876
SmlI	CTYRAG	2 cut(s)	233, 988
SmoI	CTYRAG	2 cut(s)	233, 988
Sse9I	AATT	6 cut(s)	85, 112, 211, 271, 381, 1059
SsiI	CCGC	2 cut(s)	79, 419
SspI	AATATT	1 cut(s)	174
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	572, 598
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	3 cut(s)	37, 227, 498
TaqI	TCGA	1 cut(s)	234
TasI	AATT	6 cut(s)	85, 112, 211, 271, 381, 1059
TatI	WGTACW	1 cut(s)	997
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	4 cut(s)	75, 716, 778, 866
Tru1I	TTAA	6 cut(s)	188, 824, 1002, 1037, 1052, 1107
Tru9I	TTAA	6 cut(s)	188, 824, 1002, 1037, 1052, 1107
TscAI	CASTG	1 cut(s)	1074
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	266, 415
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	131, 450, 777
TspGWI	ACGGA	1 cut(s)	658
TspRI	CASTG	1 cut(s)	1074
VpaK11BI	GGWCC	3 cut(s)	223, 743, 810
VspI	ATTAAT	1 cut(s)	1107
XapI	RAATTY	3 cut(s)	211, 271, 381
XceI	RCATGY	1 cut(s)	1045
XhoI	CTCGAG	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.