Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001718

Physical Location & Seq

Genomic Coordinates Reverse (-)

19789541 .. 19793278

Gene Structure 3738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG117600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAAGAATGTAGAAATGTGGAAATCAGTGAGAAGCATTGCGTTGCTTATGTCGCTGTCTCTGTTTCTGGGTTTGCTATTGACCATGCTCCATGTCTCTGATCTGCAAAACCCACTCTCTAGATTCCGCAGCAATTTCTCCTTTTCCCCTCTTCTCTTCAATTCCAGTCACCACTTGCTTCACCCTTTCCATGTCTCTCCTATCAGAAAGTTGGATAGAATATTTGCAGAAACCTTAATGTCTGCTCCCCCAAGAATAAATATGAGGAAGGACCGTTTTCTCGAGGGGCCTGTGTTACAGGAATATACATTTGCTGCAAATTCTGTTCCTTTCAATAGCTGTCATGCTTCTACCATTGTTGAGGTCGATAAAGATCATTTTTTGGTTGCCTATTTTGGAGGGTCATCAGAGGGAGCACCTGATGTGAAAATTTGGTTGCAGACTTGCAAGAATGGCTATTGGCAGCCGCCTATCATTGCTGATGAACAACCAGATGTTCCAATGTGGAACCCCGTGTTATTCAAACTTCCATCAGAGGAGCTGCTGTTGTTCTATAAAATAGGACAAGAGGTTCAAAAATGGAGTGGATGCTTGAAGAGGTCATATGATAAAGGTGTTACCTGGACAGAAAGAGAACAACTTCCTCCTGGTATATTAGGACCAATAAAGAATAAGCCTATCCTGCTGGAAAATGGAGTTTTGCTCTGTGGATCCTCCGTTGAAAGTTGGAACTCTTGGGGGGCATGGGTGGAGGTCGCAACGGATTCTCTTAGGTCTTGGAGAAAGTATGGTCCTATTTACATTGAAAATGAAACTCTTAGTGTGATTCAGCCAGTTCCTTACCAGACTGCAAAAGGGACCTTGCGCCTTTTAATGCGATCCTTTGATCACATTGGTAGAGTTTGTATCTCAGAATCCCACGATGGTGGCCAAAACTGGGAATATGCAAAACCTACTGATCTCCCCAATCCAAACTCAGGTATTGATGGTGTAAAGCTAAGAGATGGCTCTATTTTACTTGCATATAATACAATCTCAAGGGGTGTACTTAAAGTTGCGCTCTCCGATGATGATGGGGACTCATGGCATGATGCCGTGACATTGGAGGAGGATTTGGACATGGAGTTCTCATATCCAGCTGTTATTCAAGCTAGTGATGGGTGTGTTCACATAACTTACACTTATAATAGGACGCAAGTTAAGCATGTTGTCCTTAAACCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BNR_2

Protein Analysis

408

Amino Acids

46.14

Weight (kDa)

6.07

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BNR_2	PF13088	126 - 391	1.3e-82	BNR repeat-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57700 AT5G57700 AT5G57700 AT5G57700 AT5G57700
fragaria_vesca	FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810
malus_domestica	MD13G1261500.v1.1
prunus_persica	Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1
pyrus_communis	pycom13g24920
rosa_chinensis	RchiOBHm_Chr4g0404611
rosa_laevigata	RLG00000008919
rosa_multiflora	Rmu_sc0002699.1_g000016
rosa_roxburghii	Rroxscaffold_5G00348760
rosa_rugosa	Rorug04G0047800 Rorug04G0047900.1
rosa_samantha	Rh4AG123900 Rh4BG117600 Rh4CG132000 Rh4DG116800
rosa_wichuraiana	Rw4G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1185
AciI	CCGC	2 cut(s)	127, 467
AclWI	GGATC	3 cut(s)	705, 718, 873
AcoI	YGGCCR	1 cut(s)	928
AcsI	RAATTY	2 cut(s)	319, 429
AfaI	GTAC	1 cut(s)	1047
AfiI	CCNNNNNNNGG	2 cut(s)	937, 977
AgsI	TTSAA	8 cut(s)	160, 334, 523, 575, 595, 722, 806, 1148
AjnI	CCWGG	2 cut(s)	620, 646
AleI	CACNNNNGTG	1 cut(s)	924
AloI	GAACNNNNNNTCC	4 cut(s)	555, 587, 1109, 1141
AluBI	AGCT	5 cut(s)	339, 541, 997, 1139, 1151
AluI	AGCT	5 cut(s)	339, 541, 997, 1139, 1151
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	3 cut(s)	63, 100, 199
AlwI	GGATC	3 cut(s)	705, 718, 873
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	287, 928
ApeKI	GCWGC	4 cut(s)	129, 314, 463, 541
ApoI	RAATTY	2 cut(s)	319, 429
Asp700I	GAANNNNTTC	1 cut(s)	639
AspLEI	GCGC	2 cut(s)	867, 1060
AspS9I	GGNCC	5 cut(s)	271, 287, 659, 791, 858
AsuHPI	GGTGA	2 cut(s)	161, 173
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	4 cut(s)	271, 659, 791, 858
BalI	TGGCCA	1 cut(s)	930
BamHI	GGATCC	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	4 cut(s)	141, 301, 475, 528
BccI	CCATC	6 cut(s)	538, 917, 980, 998, 1067, 1151
BceAI	ACGGC	1 cut(s)	1079
BciT130I	CCWGG	2 cut(s)	622, 648
BclI	TGATCA	1 cut(s)	886
BcoDI	GTCTC	3 cut(s)	63, 100, 199
BfaI	CTAG	2 cut(s)	120, 1152
BisI	GCNGC	5 cut(s)	130, 315, 464, 467, 542
BlsI	GCNGC	5 cut(s)	131, 316, 465, 468, 543
Bme1390I	CCNGG	2 cut(s)	622, 648
Bme18I	GGWCC	4 cut(s)	271, 659, 791, 858
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	5 cut(s)	271, 287, 659, 791, 858
BmiI	GGNNCC	4 cut(s)	288, 509, 712, 859
BmrFI	CCNGG	2 cut(s)	622, 648
BmrI	ACTGGG	1 cut(s)	946
BmsI	GCATC	2 cut(s)	578, 1081
BmuI	ACTGGG	1 cut(s)	946
BplI	GAGNNNNNCTC	2 cut(s)	687, 719
BpuEI	CTTGAG	1 cut(s)	1021
BsaBI	GATNNNNATC	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	937, 977
Bse1I	ACTGG	3 cut(s)	165, 833, 941
Bse3DI	GCAATG	2 cut(s)	36, 474
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	622, 648
BseGI	GGATG	1 cut(s)	593
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	2 cut(s)	937, 977
BseMI	GCAATG	2 cut(s)	36, 474
BseMII	CTCAG	2 cut(s)	924, 990
BseNI	ACTGG	3 cut(s)	165, 833, 941
BseRI	GAGGAG	2 cut(s)	551, 1121
BseXI	GCAGC	4 cut(s)	141, 301, 475, 528
BshFI	GGCC	2 cut(s)	289, 930
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	281
BslFI	GGGAC	2 cut(s)	871, 1091
BslI	CCNNNNNNNGG	2 cut(s)	937, 977
BsmAI	GTCTC	3 cut(s)	63, 100, 199
BsmFI	GGGAC	2 cut(s)	871, 1091
BsnI	GGCC	2 cut(s)	289, 930
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	6 cut(s)	100, 373, 710, 878, 886, 958
BspACI	CCGC	2 cut(s)	127, 467
BspANI	GGCC	2 cut(s)	289, 930
BspCNI	CTCAG	2 cut(s)	923, 989
BspLI	GGNNCC	4 cut(s)	288, 509, 712, 859
BspPI	GGATC	3 cut(s)	705, 718, 873
BsrDI	GCAATG	2 cut(s)	36, 474
BsrI	ACTGG	3 cut(s)	165, 833, 941
BssMI	GATC	6 cut(s)	100, 373, 710, 878, 886, 958
Bst2UI	CCWGG	2 cut(s)	622, 648
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	3 cut(s)	156, 161, 590
BstDEI	CTNAG	5 cut(s)	770, 818, 910, 976, 998
BstF5I	GGATG	1 cut(s)	593
BstHHI	GCGC	2 cut(s)	867, 1060
BstKTI	GATC	6 cut(s)	103, 376, 713, 881, 889, 961
BstMAI	GTCTC	3 cut(s)	63, 100, 199
BstMBI	GATC	6 cut(s)	100, 373, 710, 878, 886, 958
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 453, 682, 1201
BstNI	CCWGG	2 cut(s)	622, 648
BstNSI	RCATGY	1 cut(s)	1208
BstSCI	CCNGG	2 cut(s)	620, 646
BstV1I	GCAGC	4 cut(s)	141, 301, 475, 528
BstX2I	RGATCY	1 cut(s)	710
BstXI	CCANNNNNNTGG	1 cut(s)	926
BstYI	RGATCY	1 cut(s)	710
BsuRI	GGCC	2 cut(s)	289, 930
BtsCI	GGATG	1 cut(s)	593
BtsIMutI	CAGTG	1 cut(s)	33
CfoI	GCGC	2 cut(s)	867, 1060
Cfr13I	GGNCC	5 cut(s)	271, 287, 659, 791, 858
CseI	GACGC	1 cut(s)	1201
Csp6I	GTAC	1 cut(s)	1046
CviAII	CATG	9 cut(s)	85, 92, 191, 344, 744, 1083, 1088, 1120, 1205
CviQI	GTAC	1 cut(s)	1046
DdeI	CTNAG	5 cut(s)	770, 818, 910, 976, 998
DpnI	GATC	6 cut(s)	102, 375, 712, 880, 888, 960
DpnII	GATC	6 cut(s)	100, 373, 710, 878, 886, 958
EaeI	YGGCCR	1 cut(s)	928
Eam1104I	CTCTTC	3 cut(s)	156, 161, 590
EarI	CTCTTC	3 cut(s)	156, 161, 590
Eco47I	GGWCC	4 cut(s)	271, 659, 791, 858
Eco88I	CYCGRG	1 cut(s)	281
EcoO109I	RGGNCCY	2 cut(s)	287, 858
EcoRII	CCWGG	2 cut(s)	620, 646
FaeI	CATG	9 cut(s)	88, 95, 194, 347, 747, 1086, 1091, 1123, 1208
FaqI	GGGAC	2 cut(s)	871, 1091
FatI	CATG	9 cut(s)	84, 91, 190, 343, 743, 1082, 1087, 1119, 1204
FauNDI	CATATG	1 cut(s)	604
FbaI	TGATCA	1 cut(s)	886
Fnu4HI	GCNGC	5 cut(s)	130, 315, 464, 467, 542
FokI	GGATG	1 cut(s)	600
Fsp4HI	GCNGC	5 cut(s)	130, 315, 464, 467, 542
FspBI	CTAG	2 cut(s)	120, 1152
GlaI	GCGC	2 cut(s)	866, 1059
GluI	GCNGC	5 cut(s)	130, 315, 464, 467, 542
HaeIII	GGCC	2 cut(s)	289, 930
HgaI	GACGC	1 cut(s)	1201
HhaI	GCGC	2 cut(s)	867, 1060
Hin1II	CATG	9 cut(s)	88, 95, 194, 347, 747, 1086, 1091, 1123, 1208
Hin6I	GCGC	2 cut(s)	865, 1058
HinP1I	GCGC	2 cut(s)	865, 1058
HinfI	GANTC	5 cut(s)	123, 764, 826, 914, 1079
HphI	GGTGA	2 cut(s)	161, 173
Hpy166II	GTNNAC	2 cut(s)	1046, 1168
Hpy188I	TCNGA	6 cut(s)	100, 206, 409, 535, 913, 1066
Hpy188III	TCNNGA	2 cut(s)	120, 281
Hpy8I	GTNNAC	2 cut(s)	1046, 1168
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	8 cut(s)	106, 227, 317, 439, 447, 851, 947, 1022
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 453, 682, 1201
HpyF3I	CTNAG	5 cut(s)	770, 818, 910, 976, 998
Hsp92II	CATG	9 cut(s)	88, 95, 194, 347, 747, 1086, 1091, 1123, 1208
HspAI	GCGC	2 cut(s)	865, 1058
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	6 cut(s)	100, 373, 710, 878, 886, 958
LmnI	GCTCC	4 cut(s)	93, 250, 413, 538
Lsp1109I	GCAGC	4 cut(s)	141, 301, 475, 528
LweI	GCATC	2 cut(s)	578, 1081
MaeI	CTAG	2 cut(s)	120, 1152
MaeIII	GTNAC	4 cut(s)	167, 294, 616, 1096
MalI	GATC	6 cut(s)	102, 375, 712, 880, 888, 960
MboI	GATC	6 cut(s)	100, 373, 710, 878, 886, 958
MboII	GAAGA	4 cut(s)	16, 143, 148, 607
MflI	RGATCY	1 cut(s)	710
MhlI	GDGCHC	1 cut(s)	418
MlsI	TGGCCA	1 cut(s)	930
MluCI	AATT	5 cut(s)	133, 160, 319, 429, 1222
MluNI	TGGCCA	1 cut(s)	930
MlyI	GAGTC	1 cut(s)	1073
MmeI	TCCRAC	2 cut(s)	192, 707
Mox20I	TGGCCA	1 cut(s)	930
MroXI	GAANNNNTTC	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	930
MseI	TTAA	5 cut(s)	236, 872, 1050, 1200, 1215
MslI	CAYNNNNRTG	1 cut(s)	924
Msp20I	TGGCCA	1 cut(s)	930
MspA1I	CMGCKG	1 cut(s)	1139
MspR9I	CCNGG	2 cut(s)	622, 648
MvaI	CCWGG	2 cut(s)	622, 648
MwoI	GCNNNNNNNGC	4 cut(s)	52, 453, 682, 1201
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	6 cut(s)	100, 373, 710, 878, 886, 958
NlaIII	CATG	9 cut(s)	88, 95, 194, 347, 747, 1086, 1091, 1123, 1208
NlaIV	GGNNCC	4 cut(s)	288, 509, 712, 859
NmuCI	GTSAC	2 cut(s)	167, 1096
NspI	RCATGY	1 cut(s)	1208
OliI	CACNNNNGTG	1 cut(s)	924
PaeR7I	CTCGAG	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	4 cut(s)	123, 764, 826, 914
PkrI	GCNGC	5 cut(s)	131, 316, 465, 468, 543
PleI	GAGTC	1 cut(s)	1073
PpsI	GAGTC	1 cut(s)	1073
PpuMI	RGGWCCY	1 cut(s)	858
PsiI	TTATAA	1 cut(s)	1185
Psp5II	RGGWCCY	1 cut(s)	858
Psp6I	CCWGG	2 cut(s)	620, 646
PspGI	CCWGG	2 cut(s)	620, 646
PspN4I	GGNNCC	4 cut(s)	288, 509, 712, 859
PspPI	GGNCC	5 cut(s)	271, 287, 659, 791, 858
PspPPI	RGGWCCY	1 cut(s)	858
PsuI	RGATCY	1 cut(s)	710
PvuII	CAGCTG	1 cut(s)	1139
RsaI	GTAC	1 cut(s)	1047
RsaNI	GTAC	1 cut(s)	1046
RseI	CAYNNNNRTG	1 cut(s)	924
SaqAI	TTAA	5 cut(s)	236, 872, 1050, 1200, 1215
SatI	GCNGC	5 cut(s)	130, 315, 464, 467, 542
Sau3AI	GATC	6 cut(s)	100, 373, 710, 878, 886, 958
Sau96I	GGNCC	5 cut(s)	271, 287, 659, 791, 858
SchI	GAGTC	1 cut(s)	1073
ScrFI	CCNGG	2 cut(s)	622, 648
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	2 cut(s)	578, 1081
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	4 cut(s)	271, 659, 791, 858
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	2 cut(s)	281, 1036
SmoI	CTYRAG	2 cut(s)	281, 1036
Sse9I	AATT	5 cut(s)	133, 160, 319, 429, 1222
SsiI	CCGC	2 cut(s)	127, 467
SspI	AATATT	1 cut(s)	222
SspMI	CTAG	2 cut(s)	120, 1152
StyD4I	CCNGG	2 cut(s)	620, 646
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	282, 366
TasI	AATT	5 cut(s)	133, 160, 319, 429, 1222
TatI	WGTACW	1 cut(s)	1045
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	4 cut(s)	123, 764, 826, 914
Tru1I	TTAA	5 cut(s)	236, 872, 1050, 1200, 1215
Tru9I	TTAA	5 cut(s)	236, 872, 1050, 1200, 1215
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	2 cut(s)	167, 1096
TseI	GCWGC	4 cut(s)	129, 314, 463, 541
Tsp45I	GTSAC	2 cut(s)	167, 1096
TspDTI	ATGAA	3 cut(s)	17, 498, 825
TspGWI	ACGGA	2 cut(s)	706, 776
TspRI	CASTG	1 cut(s)	33
VpaK11BI	GGWCC	4 cut(s)	271, 659, 791, 858
XapI	RAATTY	2 cut(s)	319, 429
XbaI	TCTAGA	1 cut(s)	119
XceI	RCATGY	1 cut(s)	1208
XhoI	CTCGAG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	2 cut(s)	120, 1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.