Rroxscaffold_5G00348760

BNR repeat-like domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
21226842 .. 21231204
4363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348760.1

Sequence Viewer

Length: 1341 bp
ATGAAGAATGTAGAAATGTGGAAATCAGTGGGAAGCATTGCGTTGCTATCTCTGTTTCTGGTTTTGCTATTGCCCATGCCCCATATCTCTGATCTGCATAACCCACTCTCTAGATTCCGCAGCAATTTCTCCTTTTCCCCTCTTCTCTTCAATTCCAGTCACCACTTGCTTCACCCTTTTCATGTCTCTCCTATCAGAAAGTTGGATAGAATATTTGCAGAAACCTTAATGTCTGCTCCCTCAAGAATAAATATGAGGAAGGACCGTTTTCTCGAGGCGCCTGTGTTACAGGAATATACATTTGCTGCAAATTCTGTTCCTTTCAATAGCTGTCATGCTTCTACCATTGTTGAGGTTGATAAAGATCATTTTTTGGTTGCCTATTTTGGAGGGTCATCAGAGGGAGCACCTGATGTGAAAATTTGGTTGCAGACTTGCAAGAATGGCCATTGGCAGCCGCCTATCATTGCTGATGAACAACCAGATGTTCCAATGTGGAACCCCGTATGGAGTGGATGCTTGAAGAGGTCAAATGATAAAGGTGTTACCTGGACAGAAAGAGAACAACTTCCTCCTGGTATATTAGGACCAATAAAGAATAAGCCTATCCTGCTGGAAAATGGAGTTTTGCTTTGTGGATCCTCCGTTGAAAGTTGGAACTCTTGGGGAGCATGGGTGGAGGTTGCAACGGATTCTCTTAGGTCTTGGAAAAAGTATGGTCCTATTTACATTGAAAATGAAACTCTTAGTGTGATTCAGCCAGTTCCTTACCAGACTGCAAAAGGGACCTTGCGCCTTTTAATGCGATCCTTTGATCACATTGGTAGAGTTTGTATCTCAGAATCCCACGATGGTGGCCAAAACTGGGAATATGCAAAACCTACTGATCTCCCCAATCCAAACTCAGGTATTGATGGTGTAAAGCTAAGAGATGGCTCTATTTTACTTGCATATAATACAATCTCAAGGGGTGTACTTAAAGTTGCGCTCTCCGATGATGATGGGGACTCATGGCATGATGCCGTGACATTGGAGGAGGATTTGGACATGGAGTTCTCATATCCAGCTGTTATTCAAGCTAGTGATGGCATGTTGTCCTTAAACCAAATTGATGCAGTGGATGAGAACAAAGGGAACAAGAATACAGTCAAGATTAATATCCGCATTCACAAAAGTTGGTATAGTGATAGTGGGTGCTGTGAAAGCACCAATACTCCTGATCTAGCAATATCCATTATATTTCGGTCTGCGGCACAGGCCAACTCTCGGCAGTCAGGGGCAAGTGTTCCTCTCAGTCAAGCGAGTAAACCCCGTAGAGCTCTTCAGAGGGCATTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

446

Amino Acids

49.66

Weight (kDa)

6.23

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BNR_2 PF13088 123 - 170 2.6e-09 BNR repeat-like domain
BNR_2 PF13088 172 - 365 1.8e-56 BNR repeat-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 277
AciI CCGC 4 cut(s) 118, 458, 1162, 1250
AclWI GGATC 3 cut(s) 633, 646, 801
AcoI YGGCCR 2 cut(s) 445, 856
AcsI RAATTY 2 cut(s) 310, 420
AcuI CTGAAG 1 cut(s) 1307
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 1 cut(s) 975
AfiI CCNNNNNNNGG 3 cut(s) 865, 905, 1266
AgsI TTSAA 6 cut(s) 151, 325, 523, 650, 734, 1076
AjnI CCWGG 2 cut(s) 548, 574
AleI CACNNNNGTG 1 cut(s) 852
AloI GAACNNNNNNTCC 2 cut(s) 1037, 1069
AluBI AGCT 5 cut(s) 330, 925, 1067, 1079, 1319
AluI AGCT 5 cut(s) 330, 925, 1067, 1079, 1319
Alw21I GWGCWC 2 cut(s) 409, 1321
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 3 cut(s) 633, 646, 801
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 3 cut(s) 445, 856, 1257
ApeKI GCWGC 3 cut(s) 120, 305, 454
ApoI RAATTY 2 cut(s) 310, 420
AseI ATTAAT 1 cut(s) 1155
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 3 cut(s) 280, 795, 988
AspS9I GGNCC 4 cut(s) 262, 587, 719, 786
AsuHPI GGTGA 2 cut(s) 152, 164
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 4 cut(s) 262, 587, 719, 786
BalI TGGCCA 2 cut(s) 447, 858
BamHI GGATCC 1 cut(s) 638
BanI GGYRCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 1321
Bbv12I GWGCWC 2 cut(s) 409, 1321
BbvI GCAGC 3 cut(s) 132, 292, 466
BccI CCATC 5 cut(s) 845, 908, 926, 995, 1079
BceAI ACGGC 1 cut(s) 1007
BciT130I CCWGG 2 cut(s) 550, 576
BclI TGATCA 1 cut(s) 814
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 3 cut(s) 111, 1080, 1223
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 5 cut(s) 121, 306, 455, 458, 1251
BlsI GCNGC 5 cut(s) 122, 307, 456, 459, 1252
Bme1390I CCNGG 2 cut(s) 550, 576
Bme18I GGWCC 4 cut(s) 262, 587, 719, 786
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 4 cut(s) 262, 587, 719, 786
BmiI GGNNCC 4 cut(s) 279, 500, 640, 787
BmrFI CCNGG 2 cut(s) 550, 576
BmrI ACTGGG 1 cut(s) 874
BmsI GCATC 3 cut(s) 506, 1009, 1102
BmuI ACTGGG 1 cut(s) 874
BpuEI CTTGAG 2 cut(s) 226, 949
BsaBI GATNNNNATC 2 cut(s) 363, 1157
BsaHI GRCGYC 1 cut(s) 278
BsaXI ACNNNNNCTCC 4 cut(s) 660, 690, 1198, 1228
Bsc4I CCNNNNNNNGG 3 cut(s) 865, 905, 1266
Bse1I ACTGG 3 cut(s) 156, 761, 869
Bse3DI GCAATG 2 cut(s) 36, 465
Bse8I GATNNNNATC 2 cut(s) 363, 1157
BseBI CCWGG 2 cut(s) 550, 576
BseGI GGATG 2 cut(s) 521, 1126
BseJI GATNNNNATC 2 cut(s) 363, 1157
BseLI CCNNNNNNNGG 3 cut(s) 865, 905, 1266
BseMI GCAATG 2 cut(s) 36, 465
BseMII CTCAG 3 cut(s) 852, 918, 1306
BseNI ACTGG 3 cut(s) 156, 761, 869
BseRI GAGGAG 1 cut(s) 1049
BseXI GCAGC 3 cut(s) 132, 292, 466
BshFI GGCC 3 cut(s) 447, 858, 1259
BshNI GGYRCC 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 409, 1321
BsiHKCI CYCGRG 1 cut(s) 272
BslFI GGGAC 2 cut(s) 799, 1019
BslI CCNNNNNNNGG 3 cut(s) 865, 905, 1266
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 799, 1019
BsmI GAATGC 1 cut(s) 1164
BsnI GGCC 3 cut(s) 447, 858, 1259
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 409, 1321
Bsp143I GATC 7 cut(s) 91, 364, 638, 806, 814, 886, 1219
BspACI CCGC 4 cut(s) 118, 458, 1162, 1250
BspANI GGCC 3 cut(s) 447, 858, 1259
BspCNI CTCAG 3 cut(s) 851, 917, 1305
BspLI GGNNCC 4 cut(s) 279, 500, 640, 787
BspPI GGATC 3 cut(s) 633, 646, 801
BspQI GCTCTTC 1 cut(s) 1326
BspT107I GGYRCC 1 cut(s) 277
BsrDI GCAATG 2 cut(s) 36, 465
BsrI ACTGG 3 cut(s) 156, 761, 869
BssMI GATC 7 cut(s) 91, 364, 638, 806, 814, 886, 1219
BssNI GRCGYC 1 cut(s) 278
Bst2UI CCWGG 2 cut(s) 550, 576
Bst4CI ACNGT 2 cut(s) 266, 1147
Bst6I CTCTTC 4 cut(s) 147, 152, 518, 1326
BstACI GRCGYC 1 cut(s) 278
BstDEI CTNAG 6 cut(s) 698, 746, 838, 904, 926, 1292
BstF5I GGATG 2 cut(s) 521, 1126
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 3 cut(s) 280, 795, 988
BstKTI GATC 7 cut(s) 94, 367, 641, 809, 817, 889, 1222
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 7 cut(s) 91, 364, 638, 806, 814, 886, 1219
BstMWI GCNNNNNNNGC 4 cut(s) 444, 610, 1203, 1256
BstNI CCWGG 2 cut(s) 550, 576
BstNSI RCATGY 1 cut(s) 1093
BstSCI CCNGG 2 cut(s) 548, 574
BstV1I GCAGC 3 cut(s) 132, 292, 466
BstX2I RGATCY 1 cut(s) 638
BstXI CCANNNNNNTGG 1 cut(s) 854
BstYI RGATCY 1 cut(s) 638
BsuRI GGCC 3 cut(s) 447, 858, 1259
BtsCI GGATG 2 cut(s) 521, 1126
BtsI GCAGTG 1 cut(s) 1122
BtsIMutI CAGTG 2 cut(s) 33, 1122
CfoI GCGC 3 cut(s) 280, 795, 988
Cfr13I GGNCC 4 cut(s) 262, 587, 719, 786
Csp6I GTAC 1 cut(s) 974
CviAII CATG 8 cut(s) 76, 182, 335, 672, 1011, 1016, 1048, 1090
CviQI GTAC 1 cut(s) 974
DdeI CTNAG 6 cut(s) 698, 746, 838, 904, 926, 1292
DinI GGCGCC 1 cut(s) 279
DpnI GATC 7 cut(s) 93, 366, 640, 808, 816, 888, 1221
DpnII GATC 7 cut(s) 91, 364, 638, 806, 814, 886, 1219
EaeI YGGCCR 2 cut(s) 445, 856
Eam1104I CTCTTC 4 cut(s) 147, 152, 518, 1326
EarI CTCTTC 4 cut(s) 147, 152, 518, 1326
Ecl136II GAGCTC 1 cut(s) 1319
Eco24I GRGCYC 1 cut(s) 1321
Eco47I GGWCC 4 cut(s) 262, 587, 719, 786
Eco53kI GAGCTC 1 cut(s) 1319
Eco57I CTGAAG 1 cut(s) 1307
Eco88I CYCGRG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 1319
EcoO109I RGGNCCY 1 cut(s) 786
EcoRII CCWGG 2 cut(s) 548, 574
EcoT38I GRGCYC 1 cut(s) 1321
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
FaeI CATG 8 cut(s) 79, 185, 338, 675, 1014, 1019, 1051, 1093
FaqI GGGAC 2 cut(s) 799, 1019
FatI CATG 8 cut(s) 75, 181, 334, 671, 1010, 1015, 1047, 1089
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 5 cut(s) 121, 306, 455, 458, 1251
FokI GGATG 2 cut(s) 528, 1133
FriOI GRGCYC 1 cut(s) 1321
Fsp4HI GCNGC 5 cut(s) 121, 306, 455, 458, 1251
FspBI CTAG 3 cut(s) 111, 1080, 1223
GlaI GCGC 3 cut(s) 279, 794, 987
GluI GCNGC 5 cut(s) 121, 306, 455, 458, 1251
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 3 cut(s) 447, 858, 1259
HhaI GCGC 3 cut(s) 280, 795, 988
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 8 cut(s) 79, 185, 338, 675, 1014, 1019, 1051, 1093
Hin6I GCGC 3 cut(s) 278, 793, 986
HinP1I GCGC 3 cut(s) 278, 793, 986
HinfI GANTC 5 cut(s) 114, 692, 754, 842, 1007
HphI GGTGA 2 cut(s) 152, 164
Hpy166II GTNNAC 2 cut(s) 974, 1307
Hpy188I TCNGA 6 cut(s) 91, 197, 400, 841, 994, 1326
Hpy188III TCNNGA 5 cut(s) 111, 243, 272, 1150, 1217
Hpy8I GTNNAC 2 cut(s) 974, 1307
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 266, 1147
HpyF10VI GCNNNNNNNGC 4 cut(s) 444, 610, 1203, 1256
HpyF3I CTNAG 6 cut(s) 698, 746, 838, 904, 926, 1292
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 8 cut(s) 79, 185, 338, 675, 1014, 1019, 1051, 1093
HspAI GCGC 3 cut(s) 278, 793, 986
KasI GGCGCC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 7 cut(s) 91, 364, 638, 806, 814, 886, 1219
LguI GCTCTTC 1 cut(s) 1326
LmnI GCTCC 3 cut(s) 241, 404, 668
Lsp1109I GCAGC 3 cut(s) 132, 292, 466
LweI GCATC 3 cut(s) 506, 1009, 1102
MaeI CTAG 3 cut(s) 111, 1080, 1223
MaeIII GTNAC 4 cut(s) 158, 285, 544, 1024
MalI GATC 7 cut(s) 93, 366, 640, 808, 816, 888, 1221
MboI GATC 7 cut(s) 91, 364, 638, 806, 814, 886, 1219
MboII GAAGA 5 cut(s) 16, 134, 139, 535, 1313
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 2 cut(s) 409, 1321
MlsI TGGCCA 2 cut(s) 447, 858
MluCI AATT 5 cut(s) 124, 151, 310, 420, 1107
MluNI TGGCCA 2 cut(s) 447, 858
Mly113I GGCGCC 1 cut(s) 278
MlyI GAGTC 1 cut(s) 1001
MmeI TCCRAC 2 cut(s) 183, 635
Mox20I TGGCCA 2 cut(s) 447, 858
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 2 cut(s) 447, 858
MseI TTAA 5 cut(s) 227, 800, 978, 1100, 1155
MslI CAYNNNNRTG 1 cut(s) 852
Msp20I TGGCCA 2 cut(s) 447, 858
MspA1I CMGCKG 1 cut(s) 1067
MspR9I CCNGG 2 cut(s) 550, 576
Mva1269I GAATGC 1 cut(s) 1164
MvaI CCWGG 2 cut(s) 550, 576
MwoI GCNNNNNNNGC 4 cut(s) 444, 610, 1203, 1256
NarI GGCGCC 1 cut(s) 278
NdeII GATC 7 cut(s) 91, 364, 638, 806, 814, 886, 1219
NlaIII CATG 8 cut(s) 79, 185, 338, 675, 1014, 1019, 1051, 1093
NlaIV GGNNCC 4 cut(s) 279, 500, 640, 787
NmeAIII GCCGAG 1 cut(s) 1246
NmuCI GTSAC 2 cut(s) 158, 1024
NspI RCATGY 1 cut(s) 1093
OliI CACNNNNGTG 1 cut(s) 852
PaeR7I CTCGAG 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 1326
PctI GAATGC 1 cut(s) 1164
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 4 cut(s) 114, 692, 754, 842
PkrI GCNGC 5 cut(s) 122, 307, 456, 459, 1252
PleI GAGTC 1 cut(s) 1001
PluTI GGCGCC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 1001
PpuMI RGGWCCY 1 cut(s) 786
PshBI ATTAAT 1 cut(s) 1155
Psp124BI GAGCTC 1 cut(s) 1321
Psp5II RGGWCCY 1 cut(s) 786
Psp6I CCWGG 2 cut(s) 548, 574
PspGI CCWGG 2 cut(s) 548, 574
PspN4I GGNNCC 4 cut(s) 279, 500, 640, 787
PspPI GGNCC 4 cut(s) 262, 587, 719, 786
PspPPI RGGWCCY 1 cut(s) 786
PsuI RGATCY 1 cut(s) 638
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 1 cut(s) 975
RsaNI GTAC 1 cut(s) 974
RseI CAYNNNNRTG 1 cut(s) 852
SacI GAGCTC 1 cut(s) 1321
SapI GCTCTTC 1 cut(s) 1326
SaqAI TTAA 5 cut(s) 227, 800, 978, 1100, 1155
SatI GCNGC 5 cut(s) 121, 306, 455, 458, 1251
Sau3AI GATC 7 cut(s) 91, 364, 638, 806, 814, 886, 1219
Sau96I GGNCC 4 cut(s) 262, 587, 719, 786
SchI GAGTC 1 cut(s) 1001
ScrFI CCNGG 2 cut(s) 550, 576
SduI GDGCHC 2 cut(s) 409, 1321
SfaNI GCATC 3 cut(s) 506, 1009, 1102
SfoI GGCGCC 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 4 cut(s) 262, 587, 719, 786
SlaI CTCGAG 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 852
SmlI CTYRAG 3 cut(s) 241, 272, 964
SmoI CTYRAG 3 cut(s) 241, 272, 964
Sse9I AATT 5 cut(s) 124, 151, 310, 420, 1107
SsiI CCGC 4 cut(s) 118, 458, 1162, 1250
SspDI GGCGCC 1 cut(s) 277
SspI AATATT 1 cut(s) 213
SspMI CTAG 3 cut(s) 111, 1080, 1223
SstI GAGCTC 1 cut(s) 1321
StyD4I CCNGG 2 cut(s) 548, 574
TaaI ACNGT 2 cut(s) 266, 1147
TaqI TCGA 1 cut(s) 273
TaqII GACCGA 1 cut(s) 1233
TasI AATT 5 cut(s) 124, 151, 310, 420, 1107
TatI WGTACW 1 cut(s) 973
TauI GCSGC 2 cut(s) 460, 1253
TfiI GAWTC 4 cut(s) 114, 692, 754, 842
Tru1I TTAA 5 cut(s) 227, 800, 978, 1100, 1155
Tru9I TTAA 5 cut(s) 227, 800, 978, 1100, 1155
TscAI CASTG 2 cut(s) 33, 1122
TseFI GTSAC 2 cut(s) 158, 1024
TseI GCWGC 3 cut(s) 120, 305, 454
Tsp45I GTSAC 2 cut(s) 158, 1024
TspDTI ATGAA 4 cut(s) 17, 170, 489, 753
TspGWI ACGGA 2 cut(s) 634, 704
TspRI CASTG 2 cut(s) 33, 1122
VpaK11BI GGWCC 4 cut(s) 262, 587, 719, 786
VspI ATTAAT 1 cut(s) 1155
XapI RAATTY 2 cut(s) 310, 420
XbaI TCTAGA 1 cut(s) 110
XceI RCATGY 1 cut(s) 1093
XhoI CTCGAG 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 3 cut(s) 111, 1080, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.