Prupe.1G095300_v2.0.a1

BNR repeat-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001718
Physical Location & Seq
Reverse (-)
7523023 .. 7527716
4694 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G095300.12

Sequence Viewer

Length: 1215 bp
ATGAGAAAAATGTTGAAATCAGTGGGAAGCATTGTGTTGGTCCTGTTGCTCCCTTTGTTTCTGTTTTTGATCTTTTCAATCTTCAATGTCTGTGATCTGAATGATCCATTATCTAGATTTGGAAGCAGTTTCACATTCAATTCCATTCTCACATATAATGCCCACCACCTGCTTCACCCTTTTCACGTTTTTCCCACCAGGAAGTTAGATAGAATATTTGCTGAAACCACGTTGTCTGCTTCCCCAATTATGAGGAAGGACAGTATTCTTGAGGGGCCTGTGTTAGAGGAATACACATTTGCTGCAAATTCTGCTCCTTTCAATAGCTGCCATGCATCTACCATTGTTGAGGTTGATAAAGATCACTTTTTGGTTGCCTATTTTGGAGGTACATCAGAGGGAGCACCCGATGTGAAAATTTGGTTGCAGACATACAAGAATGGCTATTGGCAGTCACCTGTCATTGCTGATGAACAACCTGATGTTCCAATGTGGAACCCTGTGCTATTCAAACTTCCATCAGATGAGCTGCTGCTGTTTTATAAAATAGGACAAGAGGTTCAAAAATGGAGTGGTTGCATGAAGCGATCACATGATAAAGGTGTTACTTGGACAGAAAGAGAACAACTTCCTCCTGGTATATTAGGACCAATAAAGAATAAGCCTATCTTGCTGGAAAATGGACTTTTGCTCTGTGGATCCTCAGTTGAAAGCTGGAACTCTTGGGGGGCTTGGGTGGAGGTCGCCACAGATTCTGTCAGGTCTTGGAAAAAGTATGGTCCTATTTACATTGAAAATGAAACTCTTAGTGTGATTCAGCCAGTTCCTTACCAGACTGCAAAAGGGACCTTGCGTCTTTTAATGCGATCCTTTGATCACATTGGCAGAGTTTGTATTTCAGAATCCTATGATGGTGGCCAGAACTGGAATCATGCAATACCTACCGAACTCCCCAATCCAAACTCAGGTATTGACGGGGTAAAGCTAAGAGATGGCTCTATTGTACTTGCTTATAATACAGTCTCAAGGGGTGTACTTAAAGTTGCACTCTCCAATGATGACGGGGACTCATGGCATGATGCTGTGACATTGGAGGAGAATTTGGGAATGGAGTTCTCATATCCCGCTGTTATCGAGGCTAGTGATGGGTCTGTTCACATCACTTACACTTACAATAGGACACAAATTAAGCATGTTGTCCTCAAACCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BNR_2

Protein Analysis

405

Amino Acids

45.34

Weight (kDa)

5.85

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 543, 1014
AarI CACCTGC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 177
AciI CCGC 1 cut(s) 1125
AclWI GGATC 4 cut(s) 98, 693, 706, 861
AcoI YGGCCR 1 cut(s) 916
AcsI RAATTY 3 cut(s) 307, 417, 1099
AfaI GTAC 3 cut(s) 391, 1005, 1035
AfiI CCNNNNNNNGG 1 cut(s) 965
AgsI TTSAA 9 cut(s) 16, 78, 85, 139, 322, 511, 563, 710, 794
AhdI GACNNNNNGTC 1 cut(s) 852
AjnI CCWGG 2 cut(s) 197, 634
AloI GAACNNNNNNTCC 2 cut(s) 543, 575
AluBI AGCT 4 cut(s) 327, 529, 714, 985
AluI AGCT 4 cut(s) 327, 529, 714, 985
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 1 cut(s) 1027
AlwI GGATC 4 cut(s) 98, 693, 706, 861
AlwNI CAGNNNCTG 1 cut(s) 755
AoxI GGCC 2 cut(s) 275, 916
ApeKI GCWGC 4 cut(s) 302, 327, 529, 532
ApoI RAATTY 3 cut(s) 307, 417, 1099
Asp700I GAANNNNTTC 1 cut(s) 627
AspS9I GGNCC 5 cut(s) 40, 275, 647, 779, 846
AsuHPI GGTGA 2 cut(s) 167, 447
AvaII GGWCC 4 cut(s) 40, 647, 779, 846
BalI TGGCCA 1 cut(s) 918
BamHI GGATCC 1 cut(s) 698
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 4 cut(s) 289, 314, 516, 519
BccI CCATC 4 cut(s) 526, 905, 986, 1139
BciT130I CCWGG 2 cut(s) 199, 636
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 1 cut(s) 1027
BfaI CTAG 2 cut(s) 114, 1140
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 4 cut(s) 303, 328, 530, 533
BlsI GCNGC 4 cut(s) 304, 329, 531, 534
Bme1390I CCNGG 2 cut(s) 199, 636
Bme18I GGWCC 4 cut(s) 40, 647, 779, 846
BmeRI GACNNNNNGTC 1 cut(s) 852
BmgT120I GGNCC 5 cut(s) 40, 275, 647, 779, 846
BmiI GGNNCC 4 cut(s) 276, 497, 700, 847
BmrFI CCNGG 2 cut(s) 199, 636
BmsI GCATC 2 cut(s) 344, 1069
BpuEI CTTGAG 2 cut(s) 290, 1009
BsaBI GATNNNNATC 1 cut(s) 360
Bsc4I CCNNNNNNNGG 1 cut(s) 965
Bse1I ACTGG 2 cut(s) 821, 929
Bse3DI GCAATG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 2 cut(s) 199, 636
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 965
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 2 cut(s) 717, 978
BseNI ACTGG 2 cut(s) 821, 929
BseRI GAGGAG 1 cut(s) 1109
BseXI GCAGC 4 cut(s) 289, 314, 516, 519
BshFI GGCC 2 cut(s) 277, 918
BsiHKAI GWGCWC 1 cut(s) 406
BslFI GGGAC 2 cut(s) 859, 1079
BslI CCNNNNNNNGG 1 cut(s) 965
BsmAI GTCTC 1 cut(s) 1027
BsmFI GGGAC 2 cut(s) 859, 1079
BsnI GGCC 2 cut(s) 277, 918
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 8 cut(s) 69, 94, 103, 361, 587, 698, 866, 874
BspACI CCGC 1 cut(s) 1125
BspANI GGCC 2 cut(s) 277, 918
BspCNI CTCAG 2 cut(s) 716, 977
BspLI GGNNCC 4 cut(s) 276, 497, 700, 847
BspMI ACCTGC 1 cut(s) 177
BspPI GGATC 4 cut(s) 98, 693, 706, 861
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 2 cut(s) 821, 929
BssMI GATC 8 cut(s) 69, 94, 103, 361, 587, 698, 866, 874
Bst2UI CCWGG 2 cut(s) 199, 636
Bst4CI ACNGT 2 cut(s) 263, 1021
BstAPI GCANNNNNTGC 1 cut(s) 311
BstDEI CTNAG 4 cut(s) 703, 806, 964, 986
BstKTI GATC 8 cut(s) 72, 97, 106, 364, 590, 701, 869, 877
BstMAI GTCTC 1 cut(s) 1027
BstMBI GATC 8 cut(s) 69, 94, 103, 361, 587, 698, 866, 874
BstMWI GCNNNNNNNGC 2 cut(s) 311, 670
BstNI CCWGG 2 cut(s) 199, 636
BstNSI RCATGY 1 cut(s) 1196
BstSCI CCNGG 2 cut(s) 197, 634
BstV1I GCAGC 4 cut(s) 289, 314, 516, 519
BstX2I RGATCY 1 cut(s) 698
BstYI RGATCY 1 cut(s) 698
BsuRI GGCC 2 cut(s) 277, 918
BtsIMutI CAGTG 1 cut(s) 27
BveI ACCTGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 755
Cfr13I GGNCC 5 cut(s) 40, 275, 647, 779, 846
CseI GACGC 1 cut(s) 842
Csp6I GTAC 3 cut(s) 390, 1004, 1034
CviAII CATG 7 cut(s) 332, 580, 593, 932, 1071, 1076, 1193
CviQI GTAC 3 cut(s) 390, 1004, 1034
DdeI CTNAG 4 cut(s) 703, 806, 964, 986
DpnI GATC 8 cut(s) 71, 96, 105, 363, 589, 700, 868, 876
DpnII GATC 8 cut(s) 69, 94, 103, 361, 587, 698, 866, 874
DriI GACNNNNNGTC 1 cut(s) 852
EaeI YGGCCR 1 cut(s) 916
Eam1105I GACNNNNNGTC 1 cut(s) 852
Eco47I GGWCC 4 cut(s) 40, 647, 779, 846
EcoO109I RGGNCCY 2 cut(s) 275, 846
EcoRII CCWGG 2 cut(s) 197, 634
EcoT22I ATGCAT 1 cut(s) 337
FaeI CATG 7 cut(s) 335, 583, 596, 935, 1074, 1079, 1196
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FaqI GGGAC 2 cut(s) 859, 1079
FatI CATG 7 cut(s) 331, 579, 592, 931, 1070, 1075, 1192
FauI CCCGC 1 cut(s) 1132
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 4 cut(s) 303, 328, 530, 533
Fsp4HI GCNGC 4 cut(s) 303, 328, 530, 533
FspBI CTAG 2 cut(s) 114, 1140
GluI GCNGC 4 cut(s) 303, 328, 530, 533
HaeIII GGCC 2 cut(s) 277, 918
HgaI GACGC 1 cut(s) 842
Hin1II CATG 7 cut(s) 335, 583, 596, 935, 1074, 1079, 1196
HinfI GANTC 5 cut(s) 752, 814, 902, 928, 1067
HphI GGTGA 2 cut(s) 167, 447
Hpy166II GTNNAC 2 cut(s) 1034, 1156
Hpy188I TCNGA 4 cut(s) 99, 397, 523, 901
Hpy188III TCNNGA 2 cut(s) 114, 269
Hpy8I GTNNAC 2 cut(s) 1034, 1156
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 263, 1021
HpyCH4IV ACGT 2 cut(s) 186, 230
HpyCH4V TGCA 7 cut(s) 305, 335, 427, 579, 839, 935, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 670
HpyF3I CTNAG 4 cut(s) 703, 806, 964, 986
HpySE526I ACGT 2 cut(s) 186, 230
Hsp92II CATG 7 cut(s) 335, 583, 596, 935, 1074, 1079, 1196
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 8 cut(s) 69, 94, 103, 361, 587, 698, 866, 874
LmnI GCTCC 3 cut(s) 54, 319, 401
Lsp1109I GCAGC 4 cut(s) 289, 314, 516, 519
LweI GCATC 2 cut(s) 344, 1069
MaeI CTAG 2 cut(s) 114, 1140
MaeII ACGT 2 cut(s) 186, 230
MaeIII GTNAC 3 cut(s) 453, 604, 1084
MalI GATC 8 cut(s) 71, 96, 105, 363, 589, 700, 868, 876
MboI GATC 8 cut(s) 69, 94, 103, 361, 587, 698, 866, 874
MboII GAAGA 1 cut(s) 73
MflI RGATCY 1 cut(s) 698
MhlI GDGCHC 1 cut(s) 406
MlsI TGGCCA 1 cut(s) 918
MluCI AATT 7 cut(s) 139, 246, 307, 417, 1099, 1185, 1210
MluNI TGGCCA 1 cut(s) 918
MlyI GAGTC 1 cut(s) 1061
Mox20I TGGCCA 1 cut(s) 918
Mph1103I ATGCAT 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 627
MscI TGGCCA 1 cut(s) 918
MseI TTAA 3 cut(s) 860, 1038, 1188
Msp20I TGGCCA 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 1127
MspR9I CCNGG 2 cut(s) 199, 636
MvaI CCWGG 2 cut(s) 199, 636
MwoI GCNNNNNNNGC 2 cut(s) 311, 670
NdeII GATC 8 cut(s) 69, 94, 103, 361, 587, 698, 866, 874
NlaIII CATG 7 cut(s) 335, 583, 596, 935, 1074, 1079, 1196
NlaIV GGNNCC 4 cut(s) 276, 497, 700, 847
NmuCI GTSAC 2 cut(s) 453, 1084
NsiI ATGCAT 1 cut(s) 337
NspI RCATGY 1 cut(s) 1196
PaqCI CACCTGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 4 cut(s) 752, 814, 902, 928
PkrI GCNGC 4 cut(s) 304, 329, 531, 534
PleI GAGTC 1 cut(s) 1061
PpsI GAGTC 1 cut(s) 1061
PpuMI RGGWCCY 1 cut(s) 846
PsiI TTATAA 2 cut(s) 543, 1014
Psp5II RGGWCCY 1 cut(s) 846
Psp6I CCWGG 2 cut(s) 197, 634
PspGI CCWGG 2 cut(s) 197, 634
PspN4I GGNNCC 4 cut(s) 276, 497, 700, 847
PspPI GGNCC 5 cut(s) 40, 275, 647, 779, 846
PspPPI RGGWCCY 1 cut(s) 846
PstNI CAGNNNCTG 1 cut(s) 755
PsuI RGATCY 1 cut(s) 698
RsaI GTAC 3 cut(s) 391, 1005, 1035
RsaNI GTAC 3 cut(s) 390, 1004, 1034
SaqAI TTAA 3 cut(s) 860, 1038, 1188
SatI GCNGC 4 cut(s) 303, 328, 530, 533
Sau3AI GATC 8 cut(s) 69, 94, 103, 361, 587, 698, 866, 874
Sau96I GGNCC 5 cut(s) 40, 275, 647, 779, 846
SchI GAGTC 1 cut(s) 1061
ScrFI CCNGG 2 cut(s) 199, 636
SduI GDGCHC 1 cut(s) 406
SfaNI GCATC 2 cut(s) 344, 1069
SinI GGWCC 4 cut(s) 40, 647, 779, 846
SmlI CTYRAG 2 cut(s) 269, 1024
SmoI CTYRAG 2 cut(s) 269, 1024
Sse9I AATT 7 cut(s) 139, 246, 307, 417, 1099, 1185, 1210
SsiI CCGC 1 cut(s) 1125
SspI AATATT 1 cut(s) 216
SspMI CTAG 2 cut(s) 114, 1140
StyD4I CCNGG 2 cut(s) 197, 634
TaaI ACNGT 2 cut(s) 263, 1021
TaiI ACGT 2 cut(s) 189, 233
TaqI TCGA 1 cut(s) 1134
TasI AATT 7 cut(s) 139, 246, 307, 417, 1099, 1185, 1210
TatI WGTACW 2 cut(s) 1003, 1033
TfiI GAWTC 4 cut(s) 752, 814, 902, 928
Tru1I TTAA 3 cut(s) 860, 1038, 1188
Tru9I TTAA 3 cut(s) 860, 1038, 1188
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 2 cut(s) 453, 1084
TseI GCWGC 4 cut(s) 302, 327, 529, 532
Tsp45I GTSAC 2 cut(s) 453, 1084
TspDTI ATGAA 3 cut(s) 486, 596, 813
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 4 cut(s) 40, 647, 779, 846
XapI RAATTY 3 cut(s) 307, 417, 1099
XbaI TCTAGA 1 cut(s) 113
XceI RCATGY 1 cut(s) 1196
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 2 cut(s) 114, 1140
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.