Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001718

Physical Location & Seq

Genomic Coordinates Forward (+)

11876570 .. 11880933

Gene Structure 4364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09810.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAAGAATGTAGAAATGTGGAAATCAGTGGGAAGCATTCTGTTGCTGTCTCTGTTTCTGGTTTTGCTATTTTCCACGGTCCATGTCTCTGATATCCATAATCCACTTTCTAGATTCCGAACCAATTTCACCTTTTCCCCTCTTTTCTTCAATTCCAGTCACCACCTGCTTCACGCTTTTCATGTCTCTCCTATCAGAAATTTGGATAAAATAGTTGCAAAAAATTCAATGTCTGTTCCCCCAATAATAAATTTGAGGAAGGACCGGTTTCTCGAGGGGCCTGTGTTACAGGAATATACATTTGCTGCAAATTCTGTTCCTTTCAATAGCTGTCATGCTTCCACCATTGTTGAGGTTGATATAGATCATTTTTTAGTTGCCTATTTTGGAGGGTCATCAGAAGGAGCACCTGATGTGAAAATTTGGTTGCAGACTTACAAGAATGGCTATTGGCAGCCACCTGAGGTTGCTGATGAACAACCAGATGTTCCAATGTGGAACCCCGTGTTATTCAAACTTTCATCAGGGGAGCTGCTGTTGTTCTATAAAATAGGACAAGAGGTTCAAAAATGGAGTGGATGCTTGAAGAGGTCATATGATAAAGGTGTTACCTGGACAAAAAGAGAACAACTTCCTCCCGGTATATTAGGACCTATAAAGAATAAGCCTATCCTGCTGGAAAATGGAGATTTGCTCTGTGGATCCTCCGTTGAAAGTTGGAACTCTTGGGGGGCATGGGTGGAGGTTGCAACAGATTCTGTTAGGTCTTGGAGAAAGTATGGTCCCATTTACATTGAAAATGAAACTCTCAGTGTGATTCAGCCAGTTCCTTACCAGACTGCAAAAGGGACCTTGCGCCTTTTAATGCGATCCTTTGATCACATTGGTAGAGTTTGCATCTCAGAATCCCATGACGGTGGCCAAAACTGGGAATACGCAAAACCTACTGATCTCCCCAATCCAAATTCAGGGGTGTACTTAAAGTTGCGCTCTCGGATGATGATGGGGACTCATGGTGTGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BNR_2

Protein Analysis

343

Amino Acids

38.77

Weight (kDa)

8.24

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BNR_2	PF13088	123 - 388	4.6e-84	BNR repeat-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57700 AT5G57700 AT5G57700 AT5G57700 AT5G57700
fragaria_vesca	FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810
malus_domestica	MD13G1261500.v1.1
prunus_persica	Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1
pyrus_communis	pycom13g24920
rosa_chinensis	RchiOBHm_Chr4g0404611
rosa_laevigata	RLG00000008919
rosa_multiflora	Rmu_sc0002699.1_g000016
rosa_roxburghii	Rroxscaffold_5G00348760
rosa_rugosa	Rorug04G0047800 Rorug04G0047900.1
rosa_samantha	Rh4AG123900 Rh4BG117600 Rh4CG132000 Rh4DG116800
rosa_wichuraiana	Rw4G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	174
Acc36I	ACCTGC	1 cut(s)	174
AclWI	GGATC	3 cut(s)	696, 709, 864
AcoI	YGGCCR	1 cut(s)	919
AcsI	RAATTY	6 cut(s)	199, 223, 250, 310, 420, 964
AfaI	GTAC	1 cut(s)	977
AfiI	CCNNNNNNNGG	2 cut(s)	928, 968
AgeI	ACCGGT	1 cut(s)	264
AgsI	TTSAA	8 cut(s)	151, 228, 325, 514, 566, 586, 713, 797
AjnI	CCWGG	1 cut(s)	611
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
AluBI	AGCT	2 cut(s)	330, 532
AluI	AGCT	2 cut(s)	330, 532
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	3 cut(s)	54, 91, 190
AlwI	GGATC	3 cut(s)	696, 709, 864
AlwNI	CAGNNNCTG	1 cut(s)	758
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	278, 919
ApeKI	GCWGC	3 cut(s)	305, 454, 532
ApoI	RAATTY	6 cut(s)	199, 223, 250, 310, 420, 964
AsiGI	ACCGGT	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	858, 990
AspS9I	GGNCC	6 cut(s)	79, 262, 278, 650, 782, 849
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	2 cut(s)	121, 152
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	5 cut(s)	79, 262, 650, 782, 849
AxyI	CCTNAGG	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	921
BamHI	GGATCC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	3 cut(s)	292, 466, 519
BccI	CCATC	1 cut(s)	997
BciT130I	CCWGG	1 cut(s)	613
BclI	TGATCA	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	3 cut(s)	54, 91, 190
BfaI	CTAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	174
BisI	GCNGC	3 cut(s)	306, 455, 533
BlsI	GCNGC	3 cut(s)	307, 456, 534
Bme1390I	CCNGG	2 cut(s)	613, 639
Bme18I	GGWCC	5 cut(s)	79, 262, 650, 782, 849
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	6 cut(s)	79, 262, 278, 650, 782, 849
BmiI	GGNNCC	5 cut(s)	279, 500, 703, 784, 850
BmrFI	CCNGG	2 cut(s)	613, 639
BmrI	ACTGGG	1 cut(s)	937
BmsI	GCATC	3 cut(s)	569, 906, 1011
BmuI	ACTGGG	1 cut(s)	937
BplI	GAGNNNNNCTC	2 cut(s)	678, 710
BpuMI	CCSGG	1 cut(s)	639
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	928, 968
Bse118I	RCCGGY	1 cut(s)	264
Bse1I	ACTGG	3 cut(s)	156, 824, 932
Bse21I	CCTNAGG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	584, 1002
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	2 cut(s)	928, 968
BseMII	CTCAG	3 cut(s)	453, 823, 915
BseNI	ACTGG	3 cut(s)	156, 824, 932
BseXI	GCAGC	3 cut(s)	292, 466, 519
BshFI	GGCC	2 cut(s)	280, 921
BshTI	ACCGGT	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	265, 639
BslFI	GGGAC	3 cut(s)	768, 862, 1021
BslI	CCNNNNNNNGG	2 cut(s)	928, 968
BsmAI	GTCTC	3 cut(s)	54, 91, 190
BsmFI	GGGAC	3 cut(s)	768, 862, 1021
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	280, 921
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	5 cut(s)	364, 701, 869, 877, 949
BspANI	GGCC	2 cut(s)	280, 921
BspCNI	CTCAG	3 cut(s)	454, 822, 914
BspLI	GGNNCC	5 cut(s)	279, 500, 703, 784, 850
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	3 cut(s)	696, 709, 864
BsrFI	RCCGGY	1 cut(s)	264
BsrI	ACTGG	3 cut(s)	156, 824, 932
BssAI	RCCGGY	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	5 cut(s)	364, 701, 869, 877, 949
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	2 cut(s)	79, 917
Bst6I	CTCTTC	1 cut(s)	581
BstDEI	CTNAG	3 cut(s)	462, 809, 901
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	584, 1002
BstHHI	GCGC	2 cut(s)	858, 990
BstKTI	GATC	5 cut(s)	367, 704, 872, 880, 952
BstMAI	GTCTC	3 cut(s)	54, 91, 190
BstMBI	GATC	5 cut(s)	364, 701, 869, 877, 949
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	1 cut(s)	613
BstSCI	CCNGG	2 cut(s)	611, 637
BstV1I	GCAGC	3 cut(s)	292, 466, 519
BstX2I	RGATCY	1 cut(s)	701
BstXI	CCANNNNNNTGG	1 cut(s)	917
BstYI	RGATCY	1 cut(s)	701
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	280, 921
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	584, 1002
BtsIMutI	CAGTG	2 cut(s)	33, 817
BveI	ACCTGC	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	2 cut(s)	858, 990
Cfr10I	RCCGGY	1 cut(s)	264
Cfr13I	GGNCC	6 cut(s)	79, 262, 278, 650, 782, 849
Csp6I	GTAC	1 cut(s)	976
CspAI	ACCGGT	1 cut(s)	264
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	6 cut(s)	83, 182, 335, 735, 911, 1013
CviJI	RGCY	8 cut(s)	280, 330, 447, 457, 532, 667, 823, 921
CviKI_1	RGCY	8 cut(s)	280, 330, 447, 457, 532, 667, 823, 921
CviQI	GTAC	1 cut(s)	976
DdeI	CTNAG	3 cut(s)	462, 809, 901
DpnI	GATC	5 cut(s)	366, 703, 871, 879, 951
DpnII	GATC	5 cut(s)	364, 701, 869, 877, 949
EaeI	YGGCCR	1 cut(s)	919
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	5 cut(s)	79, 262, 650, 782, 849
Eco81I	CCTNAGG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	272
EcoO109I	RGGNCCY	3 cut(s)	278, 650, 849
EcoRII	CCWGG	1 cut(s)	611
EcoRV	GATATC	1 cut(s)	94
FaeI	CATG	6 cut(s)	86, 185, 338, 738, 914, 1016
FaqI	GGGAC	3 cut(s)	768, 862, 1021
FatI	CATG	6 cut(s)	82, 181, 334, 734, 910, 1012
FauNDI	CATATG	1 cut(s)	595
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	3 cut(s)	306, 455, 533
FokI	GGATG	2 cut(s)	591, 1009
Fsp4HI	GCNGC	3 cut(s)	306, 455, 533
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	2 cut(s)	857, 989
GluI	GCNGC	3 cut(s)	306, 455, 533
HaeIII	GGCC	2 cut(s)	280, 921
HapII	CCGG	2 cut(s)	265, 639
HhaI	GCGC	2 cut(s)	858, 990
Hin1II	CATG	6 cut(s)	86, 185, 338, 738, 914, 1016
Hin6I	GCGC	2 cut(s)	856, 988
HinP1I	GCGC	2 cut(s)	856, 988
HinfI	GANTC	5 cut(s)	114, 755, 817, 905, 1009
HpaII	CCGG	2 cut(s)	265, 639
HphI	GGTGA	2 cut(s)	121, 152
Hpy166II	GTNNAC	1 cut(s)	976
Hpy188I	TCNGA	6 cut(s)	91, 119, 197, 400, 904, 996
Hpy188III	TCNNGA	2 cut(s)	111, 272
Hpy8I	GTNNAC	1 cut(s)	976
HpyAV	CCTTC	2 cut(s)	253, 395
HpyCH4III	ACNGT	2 cut(s)	79, 917
HpyCH4V	TGCA	6 cut(s)	218, 308, 430, 749, 842, 897
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	3 cut(s)	462, 809, 901
Hsp92II	CATG	6 cut(s)	86, 185, 338, 738, 914, 1016
HspAI	GCGC	2 cut(s)	856, 988
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	5 cut(s)	364, 701, 869, 877, 949
LmnI	GCTCC	2 cut(s)	404, 529
Lsp1109I	GCAGC	3 cut(s)	292, 466, 519
LweI	GCATC	3 cut(s)	569, 906, 1011
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	158, 285, 607
MalI	GATC	5 cut(s)	366, 703, 871, 879, 951
MboI	GATC	5 cut(s)	364, 701, 869, 877, 949
MboII	GAAGA	3 cut(s)	16, 139, 598
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	921
MluCI	AATT	8 cut(s)	124, 151, 199, 223, 250, 310, 420, 964
MluNI	TGGCCA	1 cut(s)	921
MlyI	GAGTC	1 cut(s)	1003
MmeI	TCCRAC	1 cut(s)	698
Mox20I	TGGCCA	1 cut(s)	921
MroXI	GAANNNNTTC	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	921
MseI	TTAA	2 cut(s)	863, 980
MslI	CAYNNNNRTG	1 cut(s)	915
Msp20I	TGGCCA	1 cut(s)	921
MspI	CCGG	2 cut(s)	265, 639
MspR9I	CCNGG	2 cut(s)	613, 639
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	613
MwoI	GCNNNNNNNGC	1 cut(s)	673
NciI	CCSGG	1 cut(s)	639
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	5 cut(s)	364, 701, 869, 877, 949
NlaIII	CATG	6 cut(s)	86, 185, 338, 738, 914, 1016
NlaIV	GGNNCC	5 cut(s)	279, 500, 703, 784, 850
NmuCI	GTSAC	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	272
PaqCI	CACCTGC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	4 cut(s)	114, 755, 817, 905
PinAI	ACCGGT	1 cut(s)	264
PkrI	GCNGC	3 cut(s)	307, 456, 534
PleI	GAGTC	1 cut(s)	1003
PpsI	GAGTC	1 cut(s)	1003
PpuMI	RGGWCCY	2 cut(s)	650, 849
Psp5II	RGGWCCY	2 cut(s)	650, 849
Psp6I	CCWGG	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	611
PspN4I	GGNNCC	5 cut(s)	279, 500, 703, 784, 850
PspPI	GGNCC	6 cut(s)	79, 262, 278, 650, 782, 849
PspPPI	RGGWCCY	2 cut(s)	650, 849
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	1 cut(s)	701
RsaI	GTAC	1 cut(s)	977
RsaNI	GTAC	1 cut(s)	976
RseI	CAYNNNNRTG	1 cut(s)	915
SaqAI	TTAA	2 cut(s)	863, 980
SatI	GCNGC	3 cut(s)	306, 455, 533
Sau3AI	GATC	5 cut(s)	364, 701, 869, 877, 949
Sau96I	GGNCC	6 cut(s)	79, 262, 278, 650, 782, 849
SchI	GAGTC	1 cut(s)	1003
ScrFI	CCNGG	2 cut(s)	613, 639
SduI	GDGCHC	1 cut(s)	409
SfaNI	GCATC	3 cut(s)	569, 906, 1011
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	5 cut(s)	79, 262, 650, 782, 849
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	915
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	8 cut(s)	124, 151, 199, 223, 250, 310, 420, 964
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	611, 637
TaaI	ACNGT	2 cut(s)	79, 917
TaqI	TCGA	1 cut(s)	273
TasI	AATT	8 cut(s)	124, 151, 199, 223, 250, 310, 420, 964
TatI	WGTACW	1 cut(s)	975
TfiI	GAWTC	4 cut(s)	114, 755, 817, 905
Tru1I	TTAA	2 cut(s)	863, 980
Tru9I	TTAA	2 cut(s)	863, 980
TscAI	CASTG	2 cut(s)	33, 817
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	305, 454, 532
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	5 cut(s)	17, 170, 489, 510, 816
TspGWI	ACGGA	1 cut(s)	697
TspRI	CASTG	2 cut(s)	33, 817
VpaK11BI	GGWCC	5 cut(s)	79, 262, 650, 782, 849
XapI	RAATTY	6 cut(s)	199, 223, 250, 310, 420, 964
XbaI	TCTAGA	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.