Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001718

Physical Location & Seq

Genomic Coordinates Forward (+)

32880852 .. 32884880

Gene Structure 4029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1261500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTGGAAATCAGTGGGAAGCGTTGTGTTGCTTGTGTTGCTGTCTTTCTTTCTAGTTTTGGTATTTTCGGTGTTGAATGTGTTTGATCTGCTGCATCCTCGTACTCCTTTTTCCTTCAATTCCACTCTCGCATCCCATGCCCAACACCACCTCCTTCACTACTTTCCCATCAGAAAACTAGATAGAATATTTGCAGAAACCGCAACGACCGCGCCTGCAACCCCGAATGTAAGTATGAGGAAGGACTGTTACCTTGAGGGGCCTGTGTTAGAGGAATACACGTTTCCTGCACATTCTGCTCCCTTCAATAGCTGTCATGCTTCTACCATTGTTGAGGTTGATAAAGATCACTTCTTGGTTGCCTATTTCGGAGGTACGTCAGAGGGTGCACCTGATGTGAAGATTTGGTTGCAGACCTACAAGAATGGCTATTGGCAGTCACCTGTCGTTGCTGATGAACAACTTGACACCCCAATGTGGAACCCTGTATTGTTCAAACTTCCATCAGAGGAGCTGCTTCTGTTCTATAAAATAGGACCAGAGGTTCAAAAATGGAGTGGATGCATGAAGCGGTCATATGATAAAGGTGTTACTTGGACAGAAAGAGAGCAACTTCCTCCTGGTATATTAGGACCAATAAAGAATAAGCCTATCTTGCTGGAAAATGGTAATTTGCTATGTGGATCCTCTGTCGAAAGCTGGAACTCTTGGGGCGCATGGGTGGAGGTCGCAACAGATTCTGTTAGGTTGTGGAGAAAGTACGGTCCTATTTATGTTGAAAACGAAACTCTTAGTGTCATTCAACCAGTTCCTTACCAGACTGCAACAGGGACCTTGCGCCTTTTAATGCGATCCTTTGATCAGATTGGGAGAGTTTGTGTTGCAGAATCCAACGACGGTGGCCAGAACTGGAATCATGCAATACCTACTGAACTCCCCAATCCAAACTCAGGTATTGATGGGGTAAAGCTAAGAGATGGCTTTATTTTACTTGCTTATAACACGGTGTCAAGGGGTGTACTTAAAGTTGCACTCTCGAATGATGATGGGGACTCATGGCGTGATGCTGTGACATTGGAGGAGACTTTGGGAATGGAATTCTCGTATCCAGCTGTTATTCAGGCCAGTGATGAGTCTATTCACATCACTTACACTTATAATAGGACACAAATTAAGCATGTTGTCCTTAAGCCAAGATTATGCGAGGACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BNR_2

Protein Analysis

405

Amino Acids

45.45

Weight (kDa)

5.59

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BNR_2	PF13088	117 - 382	2.9e-81	BNR repeat-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57700 AT5G57700 AT5G57700 AT5G57700 AT5G57700
fragaria_vesca	FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810 FvH4_4g09810
malus_domestica	MD13G1261500.v1.1
prunus_persica	Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1 Prupe.1G095300_v2.0.a1
pyrus_communis	pycom13g24920
rosa_chinensis	RchiOBHm_Chr4g0404611
rosa_laevigata	RLG00000008919
rosa_multiflora	Rmu_sc0002699.1_g000016
rosa_roxburghii	Rroxscaffold_5G00348760
rosa_rugosa	Rorug04G0047800 Rorug04G0047900.1
rosa_samantha	Rh4AG123900 Rh4BG117600 Rh4CG132000 Rh4DG116800
rosa_wichuraiana	Rw4G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	999, 1158
AccII	CGCG	1 cut(s)	212
AciI	CCGC	3 cut(s)	201, 210, 571
AclWI	GGATC	3 cut(s)	678, 691, 846
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	1 cut(s)	1097
AfaI	GTAC	4 cut(s)	103, 376, 761, 1020
AfiI	CCNNNNNNNGG	2 cut(s)	477, 950
AflII	CTTAAG	1 cut(s)	1187
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	7 cut(s)	76, 118, 307, 496, 548, 779, 803
AjnI	CCWGG	1 cut(s)	619
AloI	GAACNNNNNNTCC	2 cut(s)	528, 560
AluBI	AGCT	5 cut(s)	312, 514, 699, 970, 1112
AluI	AGCT	5 cut(s)	312, 514, 699, 970, 1112
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	1076
Alw44I	GTGCAC	1 cut(s)	387
AlwI	GGATC	3 cut(s)	678, 691, 846
AlwNI	CAGNNNCTG	1 cut(s)	740
AoxI	GGCC	3 cut(s)	260, 901, 1122
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	91, 514
ApoI	RAATTY	1 cut(s)	1097
AspLEI	GCGC	3 cut(s)	214, 716, 840
AspS9I	GGNCC	6 cut(s)	260, 536, 632, 764, 831, 1207
AsuHPI	GGTGA	1 cut(s)	432
AvaII	GGWCC	5 cut(s)	536, 632, 764, 831, 1207
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	903
BamHI	GGATCC	1 cut(s)	683
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	78, 501
BccI	CCATC	5 cut(s)	176, 511, 953, 971, 1040
BciT130I	CCWGG	1 cut(s)	621
BciVI	GTATCC	1 cut(s)	1116
BclI	TGATCA	1 cut(s)	859
BcoDI	GTCTC	1 cut(s)	1076
BfaI	CTAG	2 cut(s)	53, 179
BfrI	CTTAAG	1 cut(s)	1187
BfuI	GTATCC	1 cut(s)	1116
BisI	GCNGC	2 cut(s)	92, 515
BlsI	GCNGC	2 cut(s)	93, 516
Bme1390I	CCNGG	1 cut(s)	621
Bme18I	GGWCC	5 cut(s)	536, 632, 764, 831, 1207
BmgT120I	GGNCC	6 cut(s)	260, 536, 632, 764, 831, 1207
BmiI	GGNNCC	5 cut(s)	261, 482, 685, 832, 1209
BmrFI	CCNGG	1 cut(s)	621
BmsI	GCATC	4 cut(s)	103, 140, 551, 1054
BpuEI	CTTGAG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	345
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 862, 892
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 950
Bse1I	ACTGG	3 cut(s)	806, 914, 1125
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	621
BseGI	GGATG	3 cut(s)	94, 131, 566
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	477, 950
BseMII	CTCAG	1 cut(s)	963
BseNI	ACTGG	3 cut(s)	806, 914, 1125
BseRI	GAGGAG	2 cut(s)	524, 1094
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	78, 501
BsgI	GTGCAG	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	262, 903, 1124
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	391
BslFI	GGGAC	2 cut(s)	844, 1064
BslI	CCNNNNNNNGG	2 cut(s)	477, 950
BsmAI	GTCTC	1 cut(s)	1076
BsmFI	GGGAC	2 cut(s)	844, 1064
BsnI	GGCC	3 cut(s)	262, 903, 1124
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	5 cut(s)	85, 346, 683, 851, 859
BspACI	CCGC	3 cut(s)	201, 210, 571
BspANI	GGCC	3 cut(s)	262, 903, 1124
BspCNI	CTCAG	1 cut(s)	962
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	5 cut(s)	261, 482, 685, 832, 1209
BspPI	GGATC	3 cut(s)	678, 691, 846
BspTI	CTTAAG	1 cut(s)	1187
BsrI	ACTGG	3 cut(s)	806, 914, 1125
BssMI	GATC	5 cut(s)	85, 346, 683, 851, 859
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	4 cut(s)	248, 764, 899, 1006
BstAFI	CTTAAG	1 cut(s)	1187
BstAPI	GCANNNNNTGC	2 cut(s)	137, 296
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	791, 949, 971
BstF5I	GGATG	3 cut(s)	94, 131, 566
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	3 cut(s)	214, 716, 840
BstKTI	GATC	5 cut(s)	88, 349, 686, 854, 862
BstMAI	GTCTC	1 cut(s)	1076
BstMBI	GATC	5 cut(s)	85, 346, 683, 851, 859
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 137, 200, 209, 296, 655
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	1 cut(s)	1181
BstSCI	CCNGG	1 cut(s)	619
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	78, 501
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BsuI	GTATCC	1 cut(s)	1116
BsuRI	GGCC	3 cut(s)	262, 903, 1124
BtsCI	GGATG	3 cut(s)	94, 131, 566
BtsIMutI	CAGTG	2 cut(s)	18, 1132
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	740
CfoI	GCGC	3 cut(s)	214, 716, 840
Cfr13I	GGNCC	6 cut(s)	260, 536, 632, 764, 831, 1207
Csp6I	GTAC	4 cut(s)	102, 375, 760, 1019
CspCI	CAANNNNNGTGG	2 cut(s)	880, 915
CviAII	CATG	8 cut(s)	137, 317, 565, 717, 917, 1056, 1178, 1212
CviQI	GTAC	4 cut(s)	102, 375, 760, 1019
DdeI	CTNAG	3 cut(s)	791, 949, 971
DpnI	GATC	5 cut(s)	87, 348, 685, 853, 861
DpnII	GATC	5 cut(s)	85, 346, 683, 851, 859
EaeI	YGGCCR	1 cut(s)	901
Eco47I	GGWCC	5 cut(s)	536, 632, 764, 831, 1207
EcoO109I	RGGNCCY	3 cut(s)	260, 831, 1207
EcoRI	GAATTC	1 cut(s)	1097
EcoRII	CCWGG	1 cut(s)	619
EcoT22I	ATGCAT	1 cut(s)	566
FaeI	CATG	8 cut(s)	140, 320, 568, 720, 920, 1059, 1181, 1215
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	2 cut(s)	844, 1064
FatI	CATG	8 cut(s)	136, 316, 564, 716, 916, 1055, 1177, 1211
FauNDI	CATATG	1 cut(s)	577
FbaI	TGATCA	1 cut(s)	859
Fnu4HI	GCNGC	2 cut(s)	92, 515
FokI	GGATG	3 cut(s)	81, 118, 573
Fsp4HI	GCNGC	2 cut(s)	92, 515
FspBI	CTAG	2 cut(s)	53, 179
GlaI	GCGC	3 cut(s)	213, 715, 839
GluI	GCNGC	2 cut(s)	92, 515
HaeIII	GGCC	3 cut(s)	262, 903, 1124
HhaI	GCGC	3 cut(s)	214, 716, 840
Hin1II	CATG	8 cut(s)	140, 320, 568, 720, 920, 1059, 1181, 1215
Hin6I	GCGC	3 cut(s)	212, 714, 838
HinP1I	GCGC	3 cut(s)	212, 714, 838
HinfI	GANTC	5 cut(s)	737, 887, 913, 1052, 1133
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	2 cut(s)	389, 1019
Hpy188I	TCNGA	5 cut(s)	173, 371, 382, 508, 864
Hpy188III	TCNNGA	1 cut(s)	1036
Hpy8I	GTNNAC	2 cut(s)	389, 1019
Hpy99I	CGWCG	1 cut(s)	899
HpyAV	CCTTC	4 cut(s)	124, 164, 235, 313
HpyCH4III	ACNGT	4 cut(s)	248, 764, 899, 1006
HpyCH4IV	ACGT	2 cut(s)	281, 377
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 137, 200, 209, 296, 655
HpyF3I	CTNAG	3 cut(s)	791, 949, 971
HpySE526I	ACGT	2 cut(s)	281, 377
Hsp92II	CATG	8 cut(s)	140, 320, 568, 720, 920, 1059, 1181, 1215
HspAI	GCGC	3 cut(s)	212, 714, 838
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	5 cut(s)	85, 346, 683, 851, 859
LmnI	GCTCC	2 cut(s)	304, 511
Lsp1109I	GCAGC	2 cut(s)	78, 501
LweI	GCATC	4 cut(s)	103, 140, 551, 1054
MaeI	CTAG	2 cut(s)	53, 179
MaeII	ACGT	2 cut(s)	281, 377
MaeIII	GTNAC	4 cut(s)	248, 438, 589, 1069
MalI	GATC	5 cut(s)	87, 348, 685, 853, 861
MboI	GATC	5 cut(s)	85, 346, 683, 851, 859
MboII	GAAGA	1 cut(s)	412
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	903
MluCI	AATT	4 cut(s)	118, 670, 1097, 1170
MluNI	TGGCCA	1 cut(s)	903
MlyI	GAGTC	2 cut(s)	1046, 1142
MmeI	TCCRAC	1 cut(s)	915
Mox20I	TGGCCA	1 cut(s)	903
Mph1103I	ATGCAT	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	903
MseI	TTAA	4 cut(s)	845, 1023, 1173, 1188
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	903
MspA1I	CMGCKG	1 cut(s)	1112
MspCI	CTTAAG	1 cut(s)	1187
MspR9I	CCNGG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	6 cut(s)	37, 137, 200, 209, 296, 655
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	5 cut(s)	85, 346, 683, 851, 859
NlaIII	CATG	8 cut(s)	140, 320, 568, 720, 920, 1059, 1181, 1215
NlaIV	GGNNCC	5 cut(s)	261, 482, 685, 832, 1209
NmuCI	GTSAC	2 cut(s)	438, 1069
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	1 cut(s)	1181
PfeI	GAWTC	3 cut(s)	737, 887, 913
PkrI	GCNGC	2 cut(s)	93, 516
PleI	GAGTC	2 cut(s)	1046, 1141
PpsI	GAGTC	2 cut(s)	1046, 1141
PpuMI	RGGWCCY	2 cut(s)	831, 1207
PsiI	TTATAA	2 cut(s)	999, 1158
Psp5II	RGGWCCY	2 cut(s)	831, 1207
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	5 cut(s)	261, 482, 685, 832, 1209
PspPI	GGNCC	6 cut(s)	260, 536, 632, 764, 831, 1207
PspPPI	RGGWCCY	2 cut(s)	831, 1207
PstNI	CAGNNNCTG	1 cut(s)	740
PsuI	RGATCY	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	1112
RsaI	GTAC	4 cut(s)	103, 376, 761, 1020
RsaNI	GTAC	4 cut(s)	102, 375, 760, 1019
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	4 cut(s)	845, 1023, 1173, 1188
SatI	GCNGC	2 cut(s)	92, 515
Sau3AI	GATC	5 cut(s)	85, 346, 683, 851, 859
Sau96I	GGNCC	6 cut(s)	260, 536, 632, 764, 831, 1207
SchI	GAGTC	2 cut(s)	1046, 1142
ScrFI	CCNGG	1 cut(s)	621
SduI	GDGCHC	1 cut(s)	391
SfaNI	GCATC	4 cut(s)	103, 140, 551, 1054
SinI	GGWCC	5 cut(s)	536, 632, 764, 831, 1207
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	254, 1187
SmoI	CTYRAG	2 cut(s)	254, 1187
Sse9I	AATT	4 cut(s)	118, 670, 1097, 1170
SsiI	CCGC	3 cut(s)	201, 210, 571
SspI	AATATT	1 cut(s)	189
SspMI	CTAG	2 cut(s)	53, 179
StyD4I	CCNGG	1 cut(s)	619
TaaI	ACNGT	4 cut(s)	248, 764, 899, 1006
TaiI	ACGT	2 cut(s)	284, 380
TaqI	TCGA	2 cut(s)	693, 1037
TasI	AATT	4 cut(s)	118, 670, 1097, 1170
TatI	WGTACW	1 cut(s)	1018
TfiI	GAWTC	3 cut(s)	737, 887, 913
Tru1I	TTAA	4 cut(s)	845, 1023, 1173, 1188
Tru9I	TTAA	4 cut(s)	845, 1023, 1173, 1188
TscAI	CASTG	2 cut(s)	18, 1132
TseFI	GTSAC	2 cut(s)	438, 1069
TseI	GCWGC	2 cut(s)	91, 514
Tsp45I	GTSAC	2 cut(s)	438, 1069
TspDTI	ATGAA	2 cut(s)	471, 581
TspRI	CASTG	2 cut(s)	18, 1132
Vha464I	CTTAAG	1 cut(s)	1187
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	5 cut(s)	536, 632, 764, 831, 1207
XapI	RAATTY	1 cut(s)	1097
XceI	RCATGY	1 cut(s)	1181
XspI	CTAG	2 cut(s)	53, 179
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.