Rorug04G0047800

BNR repeat-like domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
7424922 .. 7425946
1025 bp
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UTR
Exon/CDS
Intron
Rorug04G0047800.1

Sequence Viewer

Length: 582 bp
ATGAGTTACTCAAAGTTGCTTCTGCTCTTGTTTGGATTTGTAGTTCTGATCACTCCATCTCTCTCGGAATACCATGACCAACCTAAGCCACCCACCACCCCCACTTACAAGCCCCCATCAGCTCCCGTTAAGAAACCACCACCCCCAATTTACACACCACCACAAAACAAACCTCCAACCAAATTACCACCACCCCATCATTACAAACCAATTGTGCCTCCCAGAGAATTGAGGAGTCCACCGCCTTATAAGAAGCCATCACCGAATCTGCCACCTCCTGTTGTCGCGAAACCACCGCCTTATAAGAACCCATCACCGACTCTGCCACCTCCTGTTGTCGCCAAACCACCGCCTTATAAGAACCCATCACCGACTCTGCCACCTCCTGTTGTCGCCAAACCACCACCTCAACACAAGCCAACACCAGCTACTGGTCACTATCCGGGACACCCTCCATCGAAGAACCCTGAGCACAAGCACAAGCCGGAAGGAAAGGTTGTCCCACCTCCGACTCCATACAAGAAGCCGCCAAGAGCATACAAGCCGCCGCACAAGCCCCCAACTCCACCTAACCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

193

Amino Acids

21.25

Weight (kDa)

10.14

Isoelectric Point (pI)

83.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 249, 303, 357
AccB7I CCANNNNNTGG 1 cut(s) 431
AccII CGCG 1 cut(s) 287
AciI CCGC 6 cut(s) 242, 296, 350, 527, 545, 548
AfiI CCNNNNNNNGG 1 cut(s) 431
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
AluBI AGCT 2 cut(s) 122, 428
AluI AGCT 2 cut(s) 122, 428
Alw21I GWGCWC 1 cut(s) 474
AlwNI CAGNNNCTG 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 3 cut(s) 252, 306, 360
Bbv12I GWGCWC 1 cut(s) 474
BccI CCATC 7 cut(s) 64, 124, 204, 265, 319, 373, 463
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 1 cut(s) 444
BisI GCNGC 3 cut(s) 527, 545, 548
BlsI GCNGC 3 cut(s) 528, 546, 549
Bme1390I CCNGG 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 444
Bpu10I CCTNAGC 2 cut(s) 84, 468
BpuMI CCSGG 1 cut(s) 444
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 436
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 2 cut(s) 443, 485
BslFI GGGAC 2 cut(s) 459, 485
BslI CCNNNNNNNGG 1 cut(s) 431
BsmFI GGGAC 2 cut(s) 459, 485
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 1 cut(s) 48
Bsp68I TCGCGA 1 cut(s) 287
BspACI CCGC 6 cut(s) 242, 296, 350, 527, 545, 548
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 1 cut(s) 287
BsrI ACTGG 1 cut(s) 436
BssMI GATC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 84, 468
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 442
BstUI CGCG 1 cut(s) 287
BtuMI TCGCGA 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 431
CviAII CATG 1 cut(s) 74
DdeI CTNAG 2 cut(s) 84, 468
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
FaeI CATG 1 cut(s) 77
FaiI YATR 6 cut(s) 75, 249, 303, 357, 517, 538
FaqI GGGAC 2 cut(s) 459, 485
FatI CATG 1 cut(s) 73
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 527, 545, 548
Fsp4HI GCNGC 3 cut(s) 527, 545, 548
GluI GCNGC 3 cut(s) 527, 545, 548
HapII CCGG 2 cut(s) 443, 485
Hin1II CATG 1 cut(s) 77
HinfI GANTC 5 cut(s) 235, 265, 319, 373, 511
HpaII CCGG 2 cut(s) 443, 485
HphI GGTGA 3 cut(s) 252, 306, 360
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 3 cut(s) 48, 67, 510
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 553
HpyF3I CTNAG 2 cut(s) 84, 468
Hsp92II CATG 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 9 cut(s) 235, 291, 345, 399, 417, 438, 456, 480, 498
MaeIII GTNAC 2 cut(s) 5, 434
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 1 cut(s) 472
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 4 cut(s) 147, 182, 210, 227
MlyI GAGTC 4 cut(s) 244, 313, 367, 505
MmeI TCCRAC 2 cut(s) 200, 533
MnlI CCTC 9 cut(s) 183, 225, 228, 285, 339, 393, 417, 462, 516
MseI TTAA 1 cut(s) 129
MspI CCGG 2 cut(s) 443, 485
MspR9I CCNGG 1 cut(s) 444
MunI CAATTG 1 cut(s) 210
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 553
NciI CCSGG 1 cut(s) 444
NdeII GATC 1 cut(s) 48
NlaIII CATG 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 434
NruI TCGCGA 1 cut(s) 287
PfeI GAWTC 1 cut(s) 265
PflMI CCANNNNNTGG 1 cut(s) 431
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 3 cut(s) 528, 546, 549
PleI GAGTC 4 cut(s) 243, 313, 367, 505
PpsI GAGTC 4 cut(s) 243, 313, 367, 505
PsiI TTATAA 3 cut(s) 249, 303, 357
PstNI CAGNNNCTG 1 cut(s) 431
RruI TCGCGA 1 cut(s) 287
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 3 cut(s) 527, 545, 548
Sau3AI GATC 1 cut(s) 48
SchI GAGTC 4 cut(s) 244, 313, 367, 505
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 474
Sse9I AATT 4 cut(s) 147, 182, 210, 227
SsiI CCGC 6 cut(s) 242, 296, 350, 527, 545, 548
StyD4I CCNGG 1 cut(s) 442
TaqI TCGA 1 cut(s) 458
TasI AATT 4 cut(s) 147, 182, 210, 227
TauI GCSGC 3 cut(s) 529, 547, 550
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 434
Van91I CCANNNNNTGG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.