AT5G58000

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008517
Physical Location & Seq
Forward (+)
23476731 .. 23479598
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58000.2

Sequence Viewer

Length: 1464 bp
ATGACGCCGAGGAGATCGTTGTCTAGTAGTGATTCTAATGATAAGAGTCCGAGTGTGTCGGTGGTGGCGAAGAAGGCAAGATCTGAATCTGTAGAGGGGATTGAGAAGAAGACTACTCCGGGTCGAGTTAAGAAGATCCGATCGGAGGTCTGCACGACGATCGTTAAAGCCGGTGAATTTGATTCAGTTGCGTTGAGGAAAGTGAATTCGTTGCCATCTCCAAATTCTGAGAAATCTGATACGAAAACAGAGCAAGAAGTGACTATCATTGAGAATTCGAAGATCCCAGAAGAAGTCAAGGAGTTTGGTGTTTGTCAGGAGATGATCGTATCTGCTAAATCAAACGAAAATGAGCAGATTGACAATGGCGACCAGGAGATTGGTGATCAAGATGATTATGAAGAAGATGGAGATGAGGAGGAGGAAAGAGAAGTGGAGAAGAAGAGTGTTGATGTGAAGGAGATAAATGTAGCCAAGGAAAACAGAGTTGGTGGTGTTGAGATTAAAAAGTTTAGTCAATTTCAAAACAGAACATCTCCATCTCCGTCGTCCGTTCGTAAAATTTCGCCTCCGGTGATCAAAAGGGCAACTTCTGTTTACTCGGCCCCACCAAATTCTACTTCAAGCACAGATAGATTTGCAGAGCAAGAAGACAACTTTACTCATTCACAGAGTAAATTGCAGAGTCTGGTGGATCTGGTGATGTGGAGGGATGTATCAAGGTCGACGCTTGTGTTTGGCTTCGGAACATTCCTCATCATCTCTTCTTCCTACGCCAATGATCTCAATTTCAGCTTCATATCGGTGGTAGCGTACATGGGACTCATCTATCTCGGTCTCATGTTCGTATTAAAATCACTGATCCACAGGGGAATGGTGGAGGAGGAGAGACATAAAGTGGTTGGAGTTAGAGAGGAAGATGTCAAGAGGATGCTCAGACTCATAATGCCTTATCTCAACGAGTCTCTGCATCAACTCAGAGCTCTCTTCTCCGGTGATCCATCAACCACTCTCAAGATGGGAGTAGTGTTGTTTGTCTTGGCCAGGTGTGGCTCTTCTATCACTCTTTGGAACCTCGCCAAATTTGGCTTTTTGGGAGCATTTACAATACCTAAAATCTTCATATCATACTCAACACACTTCTCTGCATACGGAAATTTCTGGATGAGGAGATTCAGGGACGCATGGGAATCTTGCAATCACAAAAAGGCAGTGGCTTTGGCACTTTTCACCTTAGTTTGGAACCTCTCCTCAGTCACTGCCCGTGTTTGGGCAGCATTCATGTTACTCGTCGCCTTCAGATATTATCAACATAAGATGATTTGGACAACTGATCAAGCTGATGATGATGAGGATGACAATGAAGAAGAAGAAGCAGAAGAAGAAAAAGAACAAGTCCCTCCTAAACACAAAAGGGCTCCTCCTCATATGATGATGCCTAATAAACTCAAGAAAATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

487

Amino Acids

55.19

Weight (kDa)

5.98

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 337 - 486 3.4e-27 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 725
AclWI GGATC 5 cut(s) 130, 277, 702, 856, 992
AcoI YGGCCR 1 cut(s) 1041
AcsI RAATTY 9 cut(s) 176, 205, 223, 274, 561, 613, 1082, 1156, 1455
AcuI CTGAAG 1 cut(s) 1282
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 4 cut(s) 145, 1239, 1269, 1270
AgsI TTSAA 2 cut(s) 524, 624
AjnI CCWGG 2 cut(s) 372, 1043
AjuI GAANNNNNNNTTGG 4 cut(s) 471, 503, 604, 636
AluBI AGCT 3 cut(s) 795, 983, 1340
AluI AGCT 3 cut(s) 795, 983, 1340
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 3 cut(s) 842, 883, 969
AlwI GGATC 5 cut(s) 130, 277, 702, 856, 992
AlwNI CAGNNNCTG 2 cut(s) 688, 1259
AoxI GGCC 2 cut(s) 603, 1041
ApeKI GCWGC 1 cut(s) 1274
ApoI RAATTY 9 cut(s) 176, 205, 223, 274, 561, 613, 1082, 1156, 1455
AspS9I GGNCC 1 cut(s) 604
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 6 cut(s) 185, 395, 586, 712, 1007, 1222
AsuII TTCGAA 1 cut(s) 278
BalI TGGCCA 1 cut(s) 1043
BanII GRGCYC 2 cut(s) 985, 1420
BbsI GAAGAC 2 cut(s) 116, 657
Bbv12I GWGCWC 1 cut(s) 985
BbvI GCAGC 1 cut(s) 1286
BccI CCATC 5 cut(s) 223, 401, 547, 1009, 1012
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 2 cut(s) 374, 1045
BclI TGATCA 3 cut(s) 385, 576, 1333
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 842, 883, 969
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 90
BglII AGATCT 1 cut(s) 80
BisI GCNGC 1 cut(s) 1275
BlsI GCNGC 1 cut(s) 1276
Bme1390I CCNGG 3 cut(s) 120, 374, 1045
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 4 cut(s) 606, 1073, 1244, 1419
BmrFI CCNGG 3 cut(s) 120, 374, 1045
BmsI GCATC 3 cut(s) 921, 979, 1425
BpiI GAAGAC 2 cut(s) 116, 657
Bpu14I TTCGAA 1 cut(s) 278
BpuEI CTTGAG 2 cut(s) 998, 1433
BpuMI CCSGG 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 842
BsaJI CCNNGG 2 cut(s) 8, 474
BsaWI WCCGGW 2 cut(s) 571, 992
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 1239, 1269, 1270
Bse118I RCCGGY 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 85
BseBI CCWGG 2 cut(s) 374, 1045
BseDI CCNNGG 2 cut(s) 8, 474
BseGI GGATG 4 cut(s) 718, 936, 1170, 1360
BseJI GATNNNNATC 1 cut(s) 85
BseLI CCNNNNNNNGG 4 cut(s) 145, 1239, 1269, 1270
BseMII CTCAG 4 cut(s) 219, 949, 991, 1266
BseRI GAGGAG 9 cut(s) 25, 431, 434, 896, 899, 1183, 1240, 1410, 1413
BseXI GCAGC 1 cut(s) 1286
BsgI GTGCAG 1 cut(s) 136
Bsh1285I CGRYCG 2 cut(s) 143, 162
BshFI GGCC 2 cut(s) 605, 1043
BsiEI CGRYCG 2 cut(s) 143, 162
BsiHKAI GWGCWC 1 cut(s) 985
BsiSI CCGG 4 cut(s) 119, 171, 572, 993
BslFI GGGAC 3 cut(s) 834, 1193, 1382
BslI CCNNNNNNNGG 4 cut(s) 145, 1239, 1269, 1270
BsmAI GTCTC 3 cut(s) 842, 883, 969
BsmFI GGGAC 3 cut(s) 834, 1193, 1382
BsmI GAATGC 1 cut(s) 1277
BsnI GGCC 2 cut(s) 605, 1043
Bso31I GGTCTC 1 cut(s) 842
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 985, 1420
BspANI GGCC 2 cut(s) 605, 1043
BspCNI CTCAG 4 cut(s) 220, 948, 990, 1265
BspLI GGNNCC 4 cut(s) 606, 1073, 1244, 1419
BspPI GGATC 5 cut(s) 130, 277, 702, 856, 992
BspQI GCTCTTC 1 cut(s) 1060
BspT104I TTCGAA 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 842
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 8, 474
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 374, 1045
Bst6I CTCTTC 4 cut(s) 437, 769, 992, 1060
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 278
BstDEI CTNAG 5 cut(s) 228, 935, 977, 1234, 1252
BstF5I GGATG 4 cut(s) 718, 936, 1170, 1360
BstMAI GTCTC 3 cut(s) 842, 883, 969
BstMCI CGRYCG 2 cut(s) 143, 162
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 2 cut(s) 374, 1045
BstSCI CCNGG 3 cut(s) 118, 372, 1043
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 1286
BstV2I GAAGAC 2 cut(s) 116, 657
BstX2I RGATCY 4 cut(s) 80, 135, 282, 694
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 4 cut(s) 80, 135, 282, 694
BsuRI GGCC 2 cut(s) 605, 1043
BtsCI GGATG 4 cut(s) 718, 936, 1170, 1360
BtsI GCAGTG 2 cut(s) 1218, 1257
BtsIMutI CAGTG 3 cut(s) 857, 1218, 1257
CaiI CAGNNNCTG 2 cut(s) 688, 1259
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 604
CseI GACGC 3 cut(s) 13, 736, 1190
Csp6I GTAC 1 cut(s) 814
CviAII CATG 4 cut(s) 817, 841, 1185, 1282
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 5 cut(s) 228, 935, 977, 1234, 1252
EaeI YGGCCR 1 cut(s) 1041
Eam1104I CTCTTC 4 cut(s) 437, 769, 992, 1060
EarI CTCTTC 4 cut(s) 437, 769, 992, 1060
Ecl136II GAGCTC 1 cut(s) 983
Eco130I CCWWGG 1 cut(s) 474
Eco24I GRGCYC 2 cut(s) 985, 1420
Eco31I GGTCTC 1 cut(s) 842
Eco53kI GAGCTC 1 cut(s) 983
Eco57I CTGAAG 1 cut(s) 1282
EcoICRI GAGCTC 1 cut(s) 983
EcoRI GAATTC 2 cut(s) 205, 274
EcoRII CCWGG 2 cut(s) 372, 1043
EcoT14I CCWWGG 1 cut(s) 474
EcoT38I GRGCYC 2 cut(s) 985, 1420
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 4 cut(s) 820, 844, 1188, 1285
FalI AAGNNNNNCTT 2 cut(s) 574, 606
FaqI GGGAC 3 cut(s) 834, 1193, 1382
FatI CATG 4 cut(s) 816, 840, 1184, 1281
FauNDI CATATG 1 cut(s) 1428
FbaI TGATCA 3 cut(s) 385, 576, 1333
FblI GTMKAC 1 cut(s) 725
Fnu4HI GCNGC 1 cut(s) 1275
FokI GGATG 4 cut(s) 725, 943, 1177, 1367
FriOI GRGCYC 2 cut(s) 985, 1420
Fsp4HI GCNGC 1 cut(s) 1275
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 1275
HaeIII GGCC 2 cut(s) 605, 1043
HapII CCGG 4 cut(s) 119, 171, 572, 993
HgaI GACGC 3 cut(s) 13, 736, 1190
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 820, 844, 1188, 1285
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HpaII CCGG 4 cut(s) 119, 171, 572, 993
HphI GGTGA 6 cut(s) 185, 395, 586, 712, 1007, 1222
Hpy166II GTNNAC 2 cut(s) 598, 726
Hpy188III TCNNGA 6 cut(s) 317, 389, 925, 1015, 1162, 1450
Hpy8I GTNNAC 2 cut(s) 598, 726
Hpy99I CGWCG 4 cut(s) 160, 550, 730, 1295
HpyAV CCTTC 3 cut(s) 67, 451, 1306
HpyCH4V TGCA 6 cut(s) 153, 641, 682, 970, 1148, 1197
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 5 cut(s) 228, 935, 977, 1234, 1252
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 820, 844, 1188, 1285
Ksp22I TGATCA 3 cut(s) 385, 576, 1333
LguI GCTCTTC 1 cut(s) 1060
LmnI GCTCC 2 cut(s) 1097, 1423
Lsp1109I GCAGC 1 cut(s) 1286
LweI GCATC 3 cut(s) 921, 979, 1425
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 3 cut(s) 259, 1255, 1284
MflI RGATCY 4 cut(s) 80, 135, 282, 694
MhlI GDGCHC 2 cut(s) 985, 1420
MlsI TGGCCA 1 cut(s) 1043
MluNI TGGCCA 1 cut(s) 1043
MlyI GAGTC 5 cut(s) 55, 694, 816, 933, 971
MmeI TCCRAC 1 cut(s) 883
Mox20I TGGCCA 1 cut(s) 1043
MscI TGGCCA 1 cut(s) 1043
MseI TTAA 5 cut(s) 129, 165, 504, 851, 1462
MslI CAYNNNNRTG 1 cut(s) 803
Msp20I TGGCCA 1 cut(s) 1043
MspI CCGG 4 cut(s) 119, 171, 572, 993
MspR9I CCNGG 3 cut(s) 120, 374, 1045
Mva1269I GAATGC 1 cut(s) 1277
MvaI CCWGG 2 cut(s) 374, 1045
MwoI GCNNNNNNNGC 1 cut(s) 74
NciI CCSGG 1 cut(s) 120
NdeI CATATG 1 cut(s) 1428
NlaIII CATG 4 cut(s) 820, 844, 1188, 1285
NlaIV GGNNCC 4 cut(s) 606, 1073, 1244, 1419
NmeAIII GCCGAG 2 cut(s) 33, 581
NmuCI GTSAC 2 cut(s) 259, 1255
NspV TTCGAA 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 1060
PcsI WCGNNNNNNNCGW 2 cut(s) 65, 809
PctI GAATGC 1 cut(s) 1277
PfeI GAWTC 5 cut(s) 32, 86, 182, 1173, 1190
PkrI GCNGC 1 cut(s) 1276
Ple19I CGATCG 2 cut(s) 143, 162
PleI GAGTC 5 cut(s) 54, 693, 816, 933, 970
PpsI GAGTC 5 cut(s) 54, 693, 816, 933, 970
Psp124BI GAGCTC 1 cut(s) 985
Psp6I CCWGG 2 cut(s) 372, 1043
PspGI CCWGG 2 cut(s) 372, 1043
PspN4I GGNNCC 4 cut(s) 606, 1073, 1244, 1419
PspPI GGNCC 1 cut(s) 604
PstNI CAGNNNCTG 2 cut(s) 688, 1259
PsuI RGATCY 4 cut(s) 80, 135, 282, 694
PvuI CGATCG 2 cut(s) 143, 162
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
RseI CAYNNNNRTG 1 cut(s) 803
SacI GAGCTC 1 cut(s) 985
SalI GTCGAC 1 cut(s) 724
SapI GCTCTTC 1 cut(s) 1060
SaqAI TTAA 5 cut(s) 129, 165, 504, 851, 1462
SatI GCNGC 1 cut(s) 1275
Sau96I GGNCC 1 cut(s) 604
SchI GAGTC 5 cut(s) 55, 694, 816, 933, 971
ScrFI CCNGG 3 cut(s) 120, 374, 1045
SduI GDGCHC 2 cut(s) 985, 1420
SfaNI GCATC 3 cut(s) 921, 979, 1425
SfcI CTRYAG 1 cut(s) 90
SfuI TTCGAA 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 803
SmlI CTYRAG 2 cut(s) 1013, 1448
SmoI CTYRAG 2 cut(s) 1013, 1448
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 985
StyD4I CCNGG 3 cut(s) 118, 372, 1043
StyI CCWWGG 1 cut(s) 474
TaqI TCGA 3 cut(s) 124, 278, 725
TaqII GACCGA 1 cut(s) 824
TfiI GAWTC 5 cut(s) 32, 86, 182, 1173, 1190
Tru1I TTAA 5 cut(s) 129, 165, 504, 851, 1462
Tru9I TTAA 5 cut(s) 129, 165, 504, 851, 1462
TscAI CASTG 3 cut(s) 864, 1218, 1264
TseFI GTSAC 2 cut(s) 259, 1255
TseI GCWGC 1 cut(s) 1274
Tsp45I GTSAC 2 cut(s) 259, 1255
TspDTI ATGAA 5 cut(s) 414, 787, 1111, 1270, 1377
TspGWI ACGGA 3 cut(s) 534, 541, 1167
TspRI CASTG 3 cut(s) 864, 1218, 1264
XapI RAATTY 9 cut(s) 176, 205, 223, 274, 561, 613, 1082, 1156, 1455
XcmI CCANNNNNNNNNTGG 1 cut(s) 1015
XmiI GTMKAC 1 cut(s) 725
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.