Rorug01G0463400

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008517
Physical Location & Seq
Reverse (-)
55589841 .. 55590404
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0463400.1

Sequence Viewer

Length: 381 bp
ATGCTCAAGTCTGGAGTTTCGATGGAGGCGGTGGCGCGGCTTAGATCGGAGGTTTGGAGGAATTTGTCGATGCAGATCGATGCTAGGTTGGTTTTGAAGGCCACGACGGGGCAGTTTTCCCGAACCAAGACGACGATATGGTGGTGCACCGGAGAAAAGACCGCCCTATCTGAGAAGGCGGAGGAGAAGAAGGAGAAGACGGCGTCCATGGATGCACGGTTGATGTTTGATAAAATGTCGCAGGGGGATGTTGTCATGTGGAACATAGTGATGACTCTGTTGATGAATAGAGGTGATATAGAGGAAGGTTATGATTTGATTTCGGGGATGCCGGATAGAAGTGTGAGGTCATGGACGCTGATGACTTCGGGGTTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

126

Amino Acids

14.29

Weight (kDa)

8.82

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 37
AciI CCGC 4 cut(s) 29, 37, 162, 179
AcsI RAATTY 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 97
Alw21I GWGCWC 1 cut(s) 149
Alw44I GTGCAC 1 cut(s) 145
AoxI GGCC 1 cut(s) 99
ApaLI GTGCAC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 61
AspLEI GCGC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 149
BccI CCATC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 216
BfaI CTAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BmsI GCATC 4 cut(s) 60, 70, 202, 318
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 33
Bsa29I ATCGAT 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 74
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 3 cut(s) 217, 253, 333
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 2 cut(s) 150, 332
BslI CCNNNNNNNGG 1 cut(s) 108
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 44, 75
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 4 cut(s) 29, 37, 162, 179
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 163
BspDI ATCGAT 1 cut(s) 78
BspFNI CGCG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 44, 75
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 41, 171
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 3 cut(s) 217, 253, 333
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 2 cut(s) 47, 78
BstMBI GATC 2 cut(s) 44, 75
BstSLI GKGCMC 1 cut(s) 149
BstUI CGCG 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 203
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 1 cut(s) 101
BsuTUI ATCGAT 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 3 cut(s) 217, 253, 333
CfoI GCGC 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 78
CseI GACGC 2 cut(s) 192, 364
CviAII CATG 3 cut(s) 208, 256, 351
CviJI RGCY 2 cut(s) 40, 101
CviKI_1 RGCY 2 cut(s) 40, 101
DdeI CTNAG 2 cut(s) 41, 171
DpnI GATC 2 cut(s) 46, 77
DpnII GATC 2 cut(s) 44, 75
EciI GGCGGA 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 3 cut(s) 211, 259, 354
FaiI YATR 7 cut(s) 139, 209, 257, 266, 299, 312, 352
FatI CATG 3 cut(s) 207, 255, 350
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 3 cut(s) 224, 260, 340
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 1 cut(s) 101
HapII CCGG 2 cut(s) 150, 332
HgaI GACGC 2 cut(s) 192, 364
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 3 cut(s) 211, 259, 354
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 1 cut(s) 274
HpaII CCGG 2 cut(s) 150, 332
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 2 cut(s) 49, 172
Hpy188III TCNNGA 2 cut(s) 12, 120
Hpy8I GTNNAC 1 cut(s) 147
Hpy99I CGWCG 2 cut(s) 109, 136
HpyAV CCTTC 4 cut(s) 91, 169, 184, 299
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 3 cut(s) 73, 147, 215
HpyF3I CTNAG 2 cut(s) 41, 171
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 3 cut(s) 211, 259, 354
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 44, 75
LpnPI CCDG 3 cut(s) 163, 227, 345
LweI GCATC 4 cut(s) 60, 70, 202, 318
MaeI CTAG 1 cut(s) 84
MalI GATC 2 cut(s) 46, 77
MboI GATC 2 cut(s) 44, 75
MboII GAAGA 2 cut(s) 199, 208
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 1 cut(s) 61
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 7 cut(s) 19, 43, 51, 175, 284, 295, 339
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 2 cut(s) 150, 332
MvnI CGCG 1 cut(s) 37
NcoI CCATGG 1 cut(s) 207
NdeII GATC 2 cut(s) 44, 75
NlaIII CATG 3 cut(s) 211, 259, 354
PflFI GACNNNGTC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PsyI GACNNNGTC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 44, 75
SchI GAGTC 1 cut(s) 268
SduI GDGCHC 1 cut(s) 149
SetI ASST 5 cut(s) 54, 89, 295, 310, 350
SfaNI GCATC 4 cut(s) 60, 70, 202, 318
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 1 cut(s) 61
SsiI CCGC 4 cut(s) 29, 37, 162, 179
SspMI CTAG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 219
TaqI TCGA 3 cut(s) 20, 68, 78
TasI AATT 1 cut(s) 61
TauI GCSGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 299
Tth111I GACNNNGTC 1 cut(s) 202
VneI GTGCAC 1 cut(s) 145
XapI RAATTY 1 cut(s) 61
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.