FvH4_1g01050

Reticulon-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
530906 .. 535292
4387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01050.t3

Sequence Viewer

Length: 2016 bp
ATGGATGTGGGTAGAAGGAGATCAGATGCAGCAGGAGTACTCAGAACTGGGAACAGTGTGGTTGCAGGGTCAGTGTGGGAGAGCAGGATGAAGCTTGATGAAGTCAGAGGTGGAATTAAGGTCTTCAATGGTGATCAGGAGAATTCTGAGGAGAGTAGTAGTAATGGTGTTGCTGCAACAACGTTAACTCCTCGCGCAAAGCTGAAGAGAGATCAGTCTCTCAACAATGGCAAGAGAAAGACATGGAATTCTGGTACAGGCAAATCTGAGTTGAAGAGTCCTGATGAGAAGTGTAAAGAGTTGAGTGTTTCTGTTGATGGGATCAAGAACAGTCCGACTCAGGTGAGGTCTGTGAGGAGGATTAGATCTGAGGGAAGCAAGGAGAGTCAAAATGGTGTTGCTTCAAGCCCTGTTGGGAGTAGGAAGACAAAGATTGAATCGGTGAGAAGTGTCTGTGATTTGGGTAAGGATGAGGGAACTGAGAAGAATTTGGGTCAGTTGAGGAAGGTGAAATCAGAGTCAATAAAGGGGAGTGATTCTTCTAGCAATGCAATTCAGTTGAGGAAGGTGAAATCAGAGTCGAATAAGGCCTCCCCAGATGAATTAGATGAGGGAGTTGAGAATTGTGTTGAGGTGATTGAGAAAATCCCAGTTGAGGAGGAGATTGGAGAGTGTGAATCTGATGAGAATTGCAAGGAGTTTGGTGTGTGCAAAGAAATGGTGATCCCAAGCAATGTGGATGTGGTGAAATCTGATTCAGCAGAATTGGTGAATGATGTTGCGGATCATGATGAAGATGGTGATGAAGATGAAGAAGATGAATTGGAGGAAGAGGTGGATGAGGAAATTGAGGTTGAAGTTGAAAAGATAAGCGTTGATGTCAAGGAAATCAATGCACCAGTACTAGAGAAACCACCAGTTGAAGAAAAAGCTCCAGTTCAAGAGAGAGCACCAGTTCAAGAAAAAGCTCCAGTTCAAGAGAGAGCACCGGTTCAAGAGAAATTGAGGAAGGTTGTGAATGAAGTGAAGGTAGTGAATGAAGTTAAGAAGTTCCAATTATTTGACCGCAGATCAAGAAATCAAGAAGTGAAAAAGATTCAACATGTTCATCAAAAGGCAGAAACCATCTCCGTTGATCTGAAAAAACAGTCTCCTGTTATGAGACGTGCAGCAGTCTACTCATATGTCCCTAAACATACATCATATGCAGCTTCAAATGATCAGTACCATAGCTTCCCAGAAACACATAGCAAATTGCAAAGTTTAGTGGATTTAGTAATGTGGAAAGATGTATCAAGATCAGTTTTTATATTTGGAATTGGAACATTTGTGATACTATCATCCTCCTACATGAAGGATCTAAATATCAGCTTCATTTCTGTGATATCATATATGAGCCTTGTTTATCTGGCTGTCAAATTCCTCTTCAGGTCCATAATCTGCAGGGGAGCTTATGAAATAGATAATGCAACCACTGTGGTGGGTGAAGAAGAAGCAATTTGGTTTCTCAAACTGGTCCTGCCTTACTTGAATGAGTTCCTGCTCAAGTTTAAAGCTTTGTTTTCTGGTGACCCTGCCACCACTATTAAGTTAGCAGTGCTGCTCTTTGTTTTGGCCAGGTGTGGCAGCTCCATAACCATTTGGACAATGGCCAAAGTAGGCTTTTTCGGAGTTTTTACCGTACCGAAAGTCTGCTCTTTGTATTCTACCCAAATAACAATCTACGCTAAATTTTGGGTTCGACGGTTTCGGGATGCTTGGGACTCCTGCACCCACAAGAGAGCAGTGACCATTGCAATATTTCTACTAGTATGGAACTTATCTTCAGTCGGAGCGCGAATTTGGGCAGCGTTCATATTGGTGGTGGCGTTCCGATACTATCAGCAGAAGTTGGTGGCGGAGGAGTGGGTGGAAGATGATGTAGCAGCAGAAGAAGGAGCTGAAGAAACTTGGCAAGGAGAAGAAAGAGCCACTCCAGTTGATATTCATATCACTAAACAAAAGAAAGGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

672

Amino Acids

75.19

Weight (kDa)

5.55

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 421 - 574 5.8e-21 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1176
AccII CGCG 2 cut(s) 195, 1837
AciI CCGC 3 cut(s) 782, 1066, 1898
AclI AACGTT 1 cut(s) 182
AclWI GGATC 4 cut(s) 329, 718, 792, 1365
AcoI YGGCCR 2 cut(s) 1614, 1650
AcsI RAATTY 6 cut(s) 142, 247, 487, 1418, 1730, 1839
AcuI CTGAAG 4 cut(s) 224, 1411, 1809, 1962
AfaI GTAC 5 cut(s) 39, 256, 903, 1226, 1683
AfiI CCNNNNNNNGG 1 cut(s) 655
AflIII ACRYGT 1 cut(s) 1102
AgeI ACCGGT 1 cut(s) 988
AhlI ACTAGT 1 cut(s) 1807
AjiI CACGTC 1 cut(s) 1166
AjnI CCWGG 1 cut(s) 1616
AleI CACNNNNGTG 1 cut(s) 1478
Alw21I GWGCWC 2 cut(s) 952, 988
Alw26I GTCTC 3 cut(s) 222, 1155, 1156
AlwI GGATC 4 cut(s) 329, 718, 792, 1365
AoxI GGCC 3 cut(s) 588, 1614, 1650
ApeKI GCWGC 8 cut(s) 29, 173, 1169, 1208, 1600, 1626, 1847, 1925
ApoI RAATTY 6 cut(s) 142, 247, 487, 1418, 1730, 1839
AsiGI ACCGGT 1 cut(s) 988
Asp700I GAANNNNTTC 2 cut(s) 1535, 2009
AspLEI GCGC 2 cut(s) 197, 1837
AspS9I GGNCC 2 cut(s) 1431, 1516
AvaII GGWCC 2 cut(s) 1431, 1516
BalI TGGCCA 2 cut(s) 1616, 1652
BarI GAAGNNNNNNTAC 2 cut(s) 1217, 1249
BbsI GAAGAC 2 cut(s) 115, 431
Bbv12I GWGCWC 2 cut(s) 952, 988
BbvI GCAGC 8 cut(s) 41, 160, 1181, 1220, 1587, 1638, 1859, 1937
BccI CCATC 3 cut(s) 311, 791, 1133
BciT130I CCWGG 1 cut(s) 1618
BclI TGATCA 2 cut(s) 133, 1219
BcoDI GTCTC 3 cut(s) 222, 1155, 1156
BcuI ACTAGT 1 cut(s) 1807
BfaI CTAG 4 cut(s) 543, 905, 1808, 2014
BfmI CTRYAG 1 cut(s) 1441
BglII AGATCT 1 cut(s) 365
BisI GCNGC 8 cut(s) 30, 174, 1170, 1209, 1601, 1627, 1848, 1926
BlsI GCNGC 8 cut(s) 31, 175, 1171, 1210, 1602, 1628, 1849, 1927
BmcAI AGTACT 2 cut(s) 39, 903
Bme1390I CCNGG 1 cut(s) 1618
Bme18I GGWCC 2 cut(s) 1431, 1516
BmgBI CACGTC 1 cut(s) 1166
BmgT120I GGNCC 2 cut(s) 1431, 1516
BmrFI CCNGG 1 cut(s) 1618
BmrI ACTGGG 2 cut(s) 57, 644
BmsI GCATC 2 cut(s) 16, 1744
BmuI ACTGGG 2 cut(s) 57, 644
BpiI GAAGAC 2 cut(s) 115, 431
BpmI CTGGAG 3 cut(s) 918, 954, 1959
BpuEI CTTGAG 1 cut(s) 1529
BsaWI WCCGGW 1 cut(s) 988
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse118I RCCGGY 1 cut(s) 988
Bse1I ACTGG 9 cut(s) 52, 650, 899, 917, 935, 953, 971, 1518, 1976
Bse3DI GCAATG 3 cut(s) 553, 739, 1791
BseBI CCWGG 1 cut(s) 1618
BseGI GGATG 7 cut(s) 10, 93, 475, 745, 844, 1340, 1759
BseLI CCNNNNNNNGG 1 cut(s) 655
BseMI GCAATG 3 cut(s) 553, 739, 1791
BseMII CTCAG 6 cut(s) 55, 138, 258, 353, 360, 471
BseNI ACTGG 9 cut(s) 52, 650, 899, 917, 935, 953, 971, 1518, 1976
BseRI GAGGAG 6 cut(s) 164, 180, 370, 671, 674, 1916
BseXI GCAGC 8 cut(s) 41, 160, 1181, 1220, 1587, 1638, 1859, 1937
BsgI GTGCAG 2 cut(s) 1188, 1753
Bsh1236I CGCG 2 cut(s) 195, 1837
BshFI GGCC 3 cut(s) 590, 1616, 1652
BshTI ACCGGT 1 cut(s) 988
BsiHKAI GWGCWC 2 cut(s) 952, 988
BsiSI CCGG 1 cut(s) 989
BslFI GGGAC 2 cut(s) 1172, 1775
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 3 cut(s) 222, 1155, 1156
BsmBI CGTCTC 1 cut(s) 1156
BsmFI GGGAC 2 cut(s) 1172, 1775
BsnI GGCC 3 cut(s) 590, 1616, 1652
Bsp1286I GDGCHC 2 cut(s) 952, 988
BspACI CCGC 3 cut(s) 782, 1066, 1898
BspANI GGCC 3 cut(s) 590, 1616, 1652
BspCNI CTCAG 6 cut(s) 54, 139, 259, 352, 361, 472
BspFNI CGCG 2 cut(s) 195, 1837
BspHI TCATGA 1 cut(s) 787
BspMAI CTGCAG 1 cut(s) 1445
BspPI GGATC 4 cut(s) 329, 718, 792, 1365
BsrDI GCAATG 3 cut(s) 553, 739, 1791
BsrFI RCCGGY 1 cut(s) 988
BsrI ACTGG 9 cut(s) 52, 650, 899, 917, 935, 953, 971, 1518, 1976
BssAI RCCGGY 1 cut(s) 988
Bst2UI CCWGG 1 cut(s) 1618
Bst4CI ACNGT 6 cut(s) 56, 332, 1149, 1477, 1681, 1746
Bst6I CTCTTC 4 cut(s) 200, 269, 825, 1430
BstDEI CTNAG 6 cut(s) 41, 147, 267, 339, 369, 480
BstEII GGTNACC 1 cut(s) 1568
BstF5I GGATG 7 cut(s) 10, 93, 475, 745, 844, 1340, 1759
BstFNI CGCG 2 cut(s) 195, 1837
BstHHI GCGC 2 cut(s) 197, 1837
BstMAI GTCTC 3 cut(s) 222, 1155, 1156
BstNI CCWGG 1 cut(s) 1618
BstNSI RCATGY 1 cut(s) 1106
BstPI GGTNACC 1 cut(s) 1568
BstSCI CCNGG 1 cut(s) 1616
BstSFI CTRYAG 1 cut(s) 1441
BstUI CGCG 2 cut(s) 195, 1837
BstV1I GCAGC 8 cut(s) 41, 160, 1181, 1220, 1587, 1638, 1859, 1937
BstV2I GAAGAC 2 cut(s) 115, 431
BstX2I RGATCY 2 cut(s) 365, 1357
BstXI CCANNNNNNTGG 1 cut(s) 1480
BstYI RGATCY 2 cut(s) 365, 1357
BsuRI GGCC 3 cut(s) 590, 1616, 1652
BtrI CACGTC 1 cut(s) 1166
BtsCI GGATG 7 cut(s) 10, 93, 475, 745, 844, 1340, 1759
BtsI GCAGTG 2 cut(s) 1602, 1791
BtsIMutI CAGTG 5 cut(s) 61, 78, 1473, 1602, 1791
CciI TCATGA 1 cut(s) 787
CfoI GCGC 2 cut(s) 197, 1837
Cfr10I RCCGGY 1 cut(s) 988
Cfr13I GGNCC 2 cut(s) 1431, 1516
Csp6I GTAC 5 cut(s) 38, 255, 902, 1225, 1682
CspAI ACCGGT 1 cut(s) 988
CspCI CAANNNNNGTGG 6 cut(s) 717, 752, 1458, 1493, 1960, 1995
CviAII CATG 4 cut(s) 243, 788, 1103, 1351
CviQI GTAC 5 cut(s) 38, 255, 902, 1225, 1682
DdeI CTNAG 6 cut(s) 41, 147, 267, 339, 369, 480
DraI TTTAAA 1 cut(s) 1552
EaeI YGGCCR 2 cut(s) 1614, 1650
Eam1104I CTCTTC 4 cut(s) 200, 269, 825, 1430
EarI CTCTTC 4 cut(s) 200, 269, 825, 1430
EciI GGCGGA 1 cut(s) 1913
Eco147I AGGCCT 1 cut(s) 590
Eco32I GATATC 1 cut(s) 1386
Eco47I GGWCC 2 cut(s) 1431, 1516
Eco57I CTGAAG 4 cut(s) 224, 1411, 1809, 1962
Eco91I GGTNACC 1 cut(s) 1568
EcoO65I GGTNACC 1 cut(s) 1568
EcoRI GAATTC 2 cut(s) 142, 247
EcoRII CCWGG 1 cut(s) 1616
EcoRV GATATC 1 cut(s) 1386
Esp3I CGTCTC 1 cut(s) 1156
FaeI CATG 4 cut(s) 246, 791, 1106, 1354
FaqI GGGAC 2 cut(s) 1172, 1775
FatI CATG 4 cut(s) 242, 787, 1102, 1350
FauNDI CATATG 2 cut(s) 1183, 1204
FbaI TGATCA 2 cut(s) 133, 1219
FblI GTMKAC 1 cut(s) 1176
Fnu4HI GCNGC 8 cut(s) 30, 174, 1170, 1209, 1601, 1627, 1848, 1926
FokI GGATG 7 cut(s) 17, 100, 482, 752, 851, 1327, 1766
Fsp4HI GCNGC 8 cut(s) 30, 174, 1170, 1209, 1601, 1627, 1848, 1926
FspBI CTAG 4 cut(s) 543, 905, 1808, 2014
GlaI GCGC 2 cut(s) 196, 1836
GluI GCNGC 8 cut(s) 30, 174, 1170, 1209, 1601, 1627, 1848, 1926
GsuI CTGGAG 3 cut(s) 918, 954, 1959
HaeIII GGCC 3 cut(s) 590, 1616, 1652
HapII CCGG 1 cut(s) 989
HhaI GCGC 2 cut(s) 197, 1837
Hin1II CATG 4 cut(s) 246, 791, 1106, 1354
Hin6I GCGC 2 cut(s) 195, 1835
HinP1I GCGC 2 cut(s) 195, 1835
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HindIII AAGCTT 2 cut(s) 92, 1554
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 1 cut(s) 989
Hpy166II GTNNAC 2 cut(s) 186, 1177
Hpy8I GTNNAC 2 cut(s) 186, 1177
Hpy99I CGWCG 1 cut(s) 1746
HpyAV CCTTC 7 cut(s) 9, 499, 559, 1003, 1021, 1348, 1928
HpyCH4III ACNGT 6 cut(s) 56, 332, 1149, 1477, 1681, 1746
HpyCH4IV ACGT 2 cut(s) 182, 1165
HpyF3I CTNAG 6 cut(s) 41, 147, 267, 339, 369, 480
HpySE526I ACGT 2 cut(s) 182, 1165
Hsp92II CATG 4 cut(s) 246, 791, 1106, 1354
HspAI GCGC 2 cut(s) 195, 1835
Ksp22I TGATCA 2 cut(s) 133, 1219
KspAI GTTAAC 1 cut(s) 186
LmnI GCTCC 6 cut(s) 937, 973, 1448, 1634, 1832, 1937
Lsp1109I GCAGC 8 cut(s) 41, 160, 1181, 1220, 1587, 1638, 1859, 1937
LweI GCATC 2 cut(s) 16, 1744
MaeI CTAG 4 cut(s) 543, 905, 1808, 2014
MaeII ACGT 2 cut(s) 182, 1165
MaeIII GTNAC 2 cut(s) 1568, 1786
MflI RGATCY 2 cut(s) 365, 1357
MhlI GDGCHC 2 cut(s) 952, 988
MlsI TGGCCA 2 cut(s) 1616, 1652
MluNI TGGCCA 2 cut(s) 1616, 1652
MlyI GAGTC 6 cut(s) 286, 331, 394, 527, 587, 1757
MmeI TCCRAC 2 cut(s) 359, 1810
Mox20I TGGCCA 2 cut(s) 1616, 1652
MroXI GAANNNNTTC 2 cut(s) 1535, 2009
MscI TGGCCA 2 cut(s) 1616, 1652
MseI TTAA 5 cut(s) 117, 185, 1044, 1551, 1587
MslI CAYNNNNRTG 3 cut(s) 1379, 1478, 1859
Msp20I TGGCCA 2 cut(s) 1616, 1652
MspI CCGG 1 cut(s) 989
MspR9I CCNGG 1 cut(s) 1618
MvaI CCWGG 1 cut(s) 1618
MvnI CGCG 2 cut(s) 195, 1837
NdeI CATATG 2 cut(s) 1183, 1204
NlaIII CATG 4 cut(s) 246, 791, 1106, 1354
NmuCI GTSAC 2 cut(s) 1568, 1786
NspI RCATGY 1 cut(s) 1106
OliI CACNNNNGTG 1 cut(s) 1478
PagI TCATGA 1 cut(s) 787
PceI AGGCCT 1 cut(s) 590
PciI ACATGT 1 cut(s) 1102
PdmI GAANNNNTTC 2 cut(s) 1535, 2009
PfeI GAWTC 6 cut(s) 437, 536, 677, 755, 1096, 2010
PinAI ACCGGT 1 cut(s) 988
PkrI GCNGC 8 cut(s) 31, 175, 1171, 1210, 1602, 1628, 1849, 1927
PleI GAGTC 6 cut(s) 285, 331, 393, 526, 586, 1757
PpsI GAGTC 6 cut(s) 285, 331, 393, 526, 586, 1757
PscI ACATGT 1 cut(s) 1102
Psp1406I AACGTT 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 1616
PspEI GGTNACC 1 cut(s) 1568
PspGI CCWGG 1 cut(s) 1616
PspPI GGNCC 2 cut(s) 1431, 1516
PstI CTGCAG 1 cut(s) 1445
PsuI RGATCY 2 cut(s) 365, 1357
RsaI GTAC 5 cut(s) 39, 256, 903, 1226, 1683
RsaNI GTAC 5 cut(s) 38, 255, 902, 1225, 1682
RseI CAYNNNNRTG 3 cut(s) 1379, 1478, 1859
SaqAI TTAA 5 cut(s) 117, 185, 1044, 1551, 1587
SatI GCNGC 8 cut(s) 30, 174, 1170, 1209, 1601, 1627, 1848, 1926
Sau96I GGNCC 2 cut(s) 1431, 1516
ScaI AGTACT 2 cut(s) 39, 903
SchI GAGTC 6 cut(s) 286, 331, 394, 527, 587, 1757
ScrFI CCNGG 1 cut(s) 1618
SduI GDGCHC 2 cut(s) 952, 988
SfaNI GCATC 2 cut(s) 16, 1744
SfcI CTRYAG 1 cut(s) 1441
SinI GGWCC 2 cut(s) 1431, 1516
SmiMI CAYNNNNRTG 3 cut(s) 1379, 1478, 1859
SmlI CTYRAG 1 cut(s) 1544
SmoI CTYRAG 1 cut(s) 1544
SpeI ACTAGT 1 cut(s) 1807
SseBI AGGCCT 1 cut(s) 590
SsiI CCGC 3 cut(s) 782, 1066, 1898
SspI AATATT 1 cut(s) 1800
SspMI CTAG 4 cut(s) 543, 905, 1808, 2014
StuI AGGCCT 1 cut(s) 590
StyD4I CCNGG 1 cut(s) 1616
TaaI ACNGT 6 cut(s) 56, 332, 1149, 1477, 1681, 1746
TaiI ACGT 2 cut(s) 185, 1168
TaqI TCGA 2 cut(s) 581, 1741
TatI WGTACW 2 cut(s) 37, 901
TfiI GAWTC 6 cut(s) 437, 536, 677, 755, 1096, 2010
Tru1I TTAA 5 cut(s) 117, 185, 1044, 1551, 1587
Tru9I TTAA 5 cut(s) 117, 185, 1044, 1551, 1587
TscAI CASTG 5 cut(s) 61, 78, 1480, 1602, 1791
TseFI GTSAC 2 cut(s) 1568, 1786
TseI GCWGC 8 cut(s) 29, 173, 1169, 1208, 1600, 1626, 1847, 1925
Tsp45I GTSAC 2 cut(s) 1568, 1786
TspGWI ACGGA 1 cut(s) 1120
TspRI CASTG 5 cut(s) 61, 78, 1480, 1602, 1791
VpaK11BI GGWCC 2 cut(s) 1431, 1516
XapI RAATTY 6 cut(s) 142, 247, 487, 1418, 1730, 1839
XceI RCATGY 1 cut(s) 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 1645
XmiI GTMKAC 1 cut(s) 1176
XmnI GAANNNNTTC 2 cut(s) 1535, 2009
XspI CTAG 4 cut(s) 543, 905, 1808, 2014
ZrmI AGTACT 2 cut(s) 39, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.