Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008517

Physical Location & Seq

Genomic Coordinates Forward (+)

928165 .. 931971

Gene Structure 3807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G001110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGGATGTGGGTAGGAGGAGATCAGATGCAGGAGTGCTCAGAACTGGGAACAGTGTGGTTGCAGGGTCAGTGTGGGAGAACAGGATGAAGCTTGATGAAGTTAGAGGTGGGATTAAGGTCTTCAATGGTGATCAGGAGAATTCTGAAGAGAGCAGCAGCAGTAATGGGGTTGCTGCAACAACAACTCCTAGCACAAGGTTGAAGAGAGGTCAATCTGTTGGTGGAGCAGTGAGTAATGGAAAGAGAAAGACTTGGAAATCTGATACAAGGGTTGAAGGTTTGGAGAAGAGTGGGGCTCAATTGTCCAGAGGAAAATCTGAGTTGAAGAATTCTGATGAACAGTGCAAGGAGTTGAGTGTTTCTGTCGATGGGATCAAGAACAGCCCAACTCAGGTGAGGTCTGTGAGGAGACTTAGATCTGAGGGAAGCAAGGAGAGTCAAAATGCTGTTGCTTCTGATAAAGCTGAGAGGAGCCCAGTTGGCAGTAGGAAGGCAAGGACTGAATTGCTGAAAAGTGCTAGTGATTTGGGTAAGGAGGAGGGAATTGAGAAGAACTTGGGTCAGTTGAGGAAGGTGAAATCAGAGTCGATCAGGGGAAGTGATTCTTCTGGCAATGCAATTCAATTGGGGAAGGTGAAATCGGAATTGAATAAGGCCTCCCCAGATGAATTGGATAAGGGAGTTGAGAAGTCTGTTGAGGTGATTGAGAAAATCCCAGTTGAGGAGGAGACTGGAGATGGTGGATCTGATGAGAATTGCAAGGAGTTTGGTGTGTGCAGAGAAATGGTGGTTCCAAGCAATGTGGATGTGGTCAAATCTGATCCAACAGAATTGGTGAATGATGTTGCTGATGATGAAGATGGTGATGAAGAAGAAGAAGGAGAAGAATTGGAGGAAGAGGTAGATGAAGAAATTGAGGTTGAAGTTGAAAAGATGAGCCTTGATATTAAGGAAATCAATGCACCGGTACAAGAGAAAGCACCAGTTGAAGAAGAAGCGCCAGTTGAAGAAAAAGCACCAGTTCAAGAAGAAGCACCAGTTCAAGAAAAAGCACCAGTTCAAGTGAGAGCACCAGTTCAAGAAAAAGCACCAGTTCAAGTGAGAGCACCAGTTCAAGAGAAAGTGAGAGCACCAGTGCAAGAGAAATTAAGCAAGGTTGTGAATGAAGTGAAGGTAGTGAATGAAGTTAAGAAGTTTCAATTATTTGACCGCAAATTAAGAAACCAAGAAGTGAAAAAGCTTCAACATGTTCATCAAAAGCCAGAAACGATCTCCGTTAATCTGAAAAAGCAATCTCCTGTTATGAAACGTGCAGAAGTCTACTCAAATGTCCCTAAACAAACATCATATGCAGCTCCAAATGATCAGTACCATAGCTTCCCAGAAACACACAGCAGATTGCAAAGTTTAGCGGATTTAGTAATGTGGAAAGATGTATCAAGATCAGTTTTTATATTTGGGATTGGAACATTTGTGATACTATCATCCTCCTACATGAAGGATCTAAATATCAGCTTCATTTCTGTCATATCCTATATGAGCCTTGTTTATCTGGCTGTCATCTTCCTCTTCAGGTCCATCATCTTGAGGGGAGCTTATGAAATAGAAAATGCAAACTCTGTGGTGGGTGAAGAAGAAGCAATTTGGTTACTGAAACTGGTCCTGCCTTACTTGAATGAGTTCCTGCTAAAGTTTAAAGCTTTGTTTTCTGGTGACCCTGCCACCACAATTAAGTTGGCGGTGCTGCTCTTTGTTTTGGCCAGGTGTGGCAGCTCCATAACCATTTGGACAATGGCCAAAGTAGGCTTTTTCGGAGTTTTCACCGTACCAAAAGTGTGCTCTTTGTATTCTACCCAGATAACAGTCTTCGCTAAATTTTGGGTTCGACGGTTTCGGGATGCTTGGGACTCCTGCTCTCACAAGAAACCAGTGACCATTGCGATCTTTCTACTAGTATGGAACTTATCTTCAGTAGAGGCTCGAATTTGGGCAGCGTTCATTTTGGTGGTGGCGTTCCGATACCATCAGCAGAAGTTGGTGACGGAGGAGTGGGTGGAAGATGATGTAGCAGCAGCAGAAGAAGAAGAAGGAGCTGAAGAAACTTGGCAGGGAGGACAAAGAGCCACTCCAGTTGATATTCACATCACTAAACAAAAGAAAGGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

722

Amino Acids

80.31

Weight (kDa)

5.45

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	471 - 624	2.1e-21	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58000 AT5G58000
fragaria_vesca	FvH4_1g01050 FvH4_1g01050 FvH4_1g01050 FvH4_1g01050 FvH4_1g01050 FvH4_1g01050
malus_domestica	MD15G1153100.v1.1
prunus_persica	Prupe.7G261500_v2.0.a1 Prupe.7G261500_v2.0.a1
pyrus_communis	pycom15g13770
rosa_chinensis	RchiOBHm_Chr2g0085811
rosa_laevigata	RLG00000015720
rosa_multiflora	Rmu_sc0012872.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155030
rosa_rugosa	Rorug01G0463400 Rorug01G0463500.1
rosa_samantha	Rh2AG012500 Rh2BG013200 Rh2CG013800 Rh2DG014900
rosa_wichuraiana	Rw2G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1320
AciI	CCGC	3 cut(s)	1210, 1412, 1739
AclWI	GGATC	4 cut(s)	380, 751, 815, 1509
AcoI	YGGCCR	2 cut(s)	1758, 1794
AcsI	RAATTY	4 cut(s)	139, 328, 1874, 1983
AcuI	CTGAAG	4 cut(s)	165, 1555, 1953, 2115
AfaI	GTAC	3 cut(s)	969, 1370, 1827
AfiI	CCNNNNNNNGG	2 cut(s)	391, 721
AflIII	ACRYGT	1 cut(s)	1246
AgeI	ACCGGT	1 cut(s)	964
AhlI	ACTAGT	1 cut(s)	1951
AjnI	CCWGG	1 cut(s)	1760
Alw21I	GWGCWC	5 cut(s)	39, 1072, 1108, 1132, 1841
Alw26I	GTCTC	2 cut(s)	403, 722
AlwI	GGATC	4 cut(s)	380, 751, 815, 1509
AoxI	GGCC	3 cut(s)	654, 1758, 1794
ApeKI	GCWGC	9 cut(s)	153, 156, 173, 1352, 1744, 1770, 1991, 2069, 2072
ApoI	RAATTY	4 cut(s)	139, 328, 1874, 1983
AsiGI	ACCGGT	1 cut(s)	964
Asp700I	GAANNNNTTC	3 cut(s)	601, 1679, 2162
AspLEI	GCGC	1 cut(s)	1000
AspS9I	GGNCC	2 cut(s)	1575, 1660
AvaII	GGWCC	2 cut(s)	1575, 1660
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BalI	TGGCCA	2 cut(s)	1760, 1796
BanII	GRGCYC	2 cut(s)	298, 476
BarI	GAAGNNNNNNTAC	2 cut(s)	1361, 1393
BbsI	GAAGAC	2 cut(s)	112, 1858
Bbv12I	GWGCWC	5 cut(s)	39, 1072, 1108, 1132, 1841
BbvI	GCAGC	9 cut(s)	160, 165, 168, 1364, 1731, 1782, 2003, 2081, 2084
BccI	CCATC	5 cut(s)	362, 731, 854, 1586, 2031
BciT130I	CCWGG	1 cut(s)	1762
BclI	TGATCA	2 cut(s)	130, 1363
BcoDI	GTCTC	2 cut(s)	403, 722
BcuI	ACTAGT	1 cut(s)	1951
BfaI	CTAG	3 cut(s)	189, 519, 1952
BfoI	RGCGCY	1 cut(s)	1001
BglI	GCCNNNNNGGC	1 cut(s)	480
BglII	AGATCT	1 cut(s)	416
BisI	GCNGC	9 cut(s)	154, 157, 174, 1353, 1745, 1771, 1992, 2070, 2073
BlsI	GCNGC	9 cut(s)	155, 158, 175, 1354, 1746, 1772, 1993, 2071, 2074
Bme1390I	CCNGG	1 cut(s)	1762
Bme18I	GGWCC	2 cut(s)	1575, 1660
BmgT120I	GGNCC	2 cut(s)	1575, 1660
BmiI	GGNNCC	2 cut(s)	473, 792
BmrFI	CCNGG	1 cut(s)	1762
BmrI	ACTGGG	3 cut(s)	54, 470, 710
BmsI	GCATC	2 cut(s)	16, 1888
BmuI	ACTGGG	3 cut(s)	54, 470, 710
BpiI	GAAGAC	2 cut(s)	112, 1858
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	2 cut(s)	753, 2112
BpuEI	CTTGAG	1 cut(s)	1606
BsaWI	WCCGGW	1 cut(s)	964
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 721
Bse118I	RCCGGY	1 cut(s)	964
Bse3DI	GCAATG	3 cut(s)	619, 805, 1935
BseBI	CCWGG	1 cut(s)	1762
BseGI	GGATG	5 cut(s)	10, 90, 811, 1484, 1903
BseLI	CCNNNNNNNGG	2 cut(s)	391, 721
BseMI	GCAATG	3 cut(s)	619, 805, 1935
BseMII	CTCAG	5 cut(s)	52, 309, 404, 411, 456
BseRI	GAGGAG	7 cut(s)	31, 421, 484, 551, 737, 740, 2060
BseXI	GCAGC	9 cut(s)	160, 165, 168, 1364, 1731, 1782, 2003, 2081, 2084
BsgI	GTGCAG	2 cut(s)	796, 1332
BshFI	GGCC	3 cut(s)	656, 1760, 1796
BshTI	ACCGGT	1 cut(s)	964
BsiHKAI	GWGCWC	5 cut(s)	39, 1072, 1108, 1132, 1841
BsiSI	CCGG	1 cut(s)	965
BslFI	GGGAC	2 cut(s)	1316, 1919
BslI	CCNNNNNNNGG	2 cut(s)	391, 721
BsmAI	GTCTC	2 cut(s)	403, 722
BsmFI	GGGAC	2 cut(s)	1316, 1919
BsnI	GGCC	3 cut(s)	656, 1760, 1796
Bsp1286I	GDGCHC	7 cut(s)	39, 298, 476, 1072, 1108, 1132, 1841
BspACI	CCGC	3 cut(s)	1210, 1412, 1739
BspANI	GGCC	3 cut(s)	656, 1760, 1796
BspCNI	CTCAG	5 cut(s)	51, 310, 403, 412, 457
BspLI	GGNNCC	2 cut(s)	473, 792
BspPI	GGATC	4 cut(s)	380, 751, 815, 1509
BsrDI	GCAATG	3 cut(s)	619, 805, 1935
BsrFI	RCCGGY	1 cut(s)	964
BssAI	RCCGGY	1 cut(s)	964
Bst2UI	CCWGG	1 cut(s)	1762
Bst4CI	ACNGT	5 cut(s)	53, 342, 1825, 1864, 1890
Bst6I	CTCTTC	5 cut(s)	141, 197, 281, 891, 1574
BstDEI	CTNAG	6 cut(s)	38, 318, 390, 413, 420, 465
BstEII	GGTNACC	1 cut(s)	1712
BstF5I	GGATG	5 cut(s)	10, 90, 811, 1484, 1903
BstH2I	RGCGCY	1 cut(s)	1001
BstHHI	GCGC	1 cut(s)	1000
BstMAI	GTCTC	2 cut(s)	403, 722
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstNI	CCWGG	1 cut(s)	1762
BstNSI	RCATGY	1 cut(s)	1250
BstPI	GGTNACC	1 cut(s)	1712
BstSCI	CCNGG	1 cut(s)	1760
BstV1I	GCAGC	9 cut(s)	160, 165, 168, 1364, 1731, 1782, 2003, 2081, 2084
BstV2I	GAAGAC	2 cut(s)	112, 1858
BstX2I	RGATCY	3 cut(s)	416, 743, 1501
BstYI	RGATCY	3 cut(s)	416, 743, 1501
BsuRI	GGCC	3 cut(s)	656, 1760, 1796
BtsCI	GGATG	5 cut(s)	10, 90, 811, 1484, 1903
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	6 cut(s)	58, 75, 234, 347, 1140, 1935
CfoI	GCGC	1 cut(s)	1000
Cfr10I	RCCGGY	1 cut(s)	964
Cfr13I	GGNCC	2 cut(s)	1575, 1660
Csp6I	GTAC	3 cut(s)	968, 1369, 1826
CspAI	ACCGGT	1 cut(s)	964
CspCI	CAANNNNNGTGG	6 cut(s)	783, 818, 1602, 1637, 2113, 2148
CviAII	CATG	2 cut(s)	1247, 1495
CviQI	GTAC	3 cut(s)	968, 1369, 1826
DdeI	CTNAG	6 cut(s)	38, 318, 390, 413, 420, 465
DraI	TTTAAA	1 cut(s)	1696
EaeI	YGGCCR	2 cut(s)	1758, 1794
Eam1104I	CTCTTC	5 cut(s)	141, 197, 281, 891, 1574
EarI	CTCTTC	5 cut(s)	141, 197, 281, 891, 1574
Eco147I	AGGCCT	1 cut(s)	656
Eco24I	GRGCYC	2 cut(s)	298, 476
Eco47I	GGWCC	2 cut(s)	1575, 1660
Eco57I	CTGAAG	4 cut(s)	165, 1555, 1953, 2115
Eco91I	GGTNACC	1 cut(s)	1712
EcoO65I	GGTNACC	1 cut(s)	1712
EcoRI	GAATTC	2 cut(s)	139, 328
EcoRII	CCWGG	1 cut(s)	1760
EcoT38I	GRGCYC	2 cut(s)	298, 476
FaeI	CATG	2 cut(s)	1250, 1498
FalI	AAGNNNNNCTT	2 cut(s)	589, 621
FaqI	GGGAC	2 cut(s)	1316, 1919
FatI	CATG	2 cut(s)	1246, 1494
FauNDI	CATATG	1 cut(s)	1348
FbaI	TGATCA	2 cut(s)	130, 1363
FblI	GTMKAC	1 cut(s)	1320
Fnu4HI	GCNGC	9 cut(s)	154, 157, 174, 1353, 1745, 1771, 1992, 2070, 2073
FokI	GGATG	5 cut(s)	17, 97, 818, 1471, 1910
FriOI	GRGCYC	2 cut(s)	298, 476
Fsp4HI	GCNGC	9 cut(s)	154, 157, 174, 1353, 1745, 1771, 1992, 2070, 2073
FspBI	CTAG	3 cut(s)	189, 519, 1952
GlaI	GCGC	1 cut(s)	999
GluI	GCNGC	9 cut(s)	154, 157, 174, 1353, 1745, 1771, 1992, 2070, 2073
GsuI	CTGGAG	2 cut(s)	753, 2112
HaeII	RGCGCY	1 cut(s)	1001
HaeIII	GGCC	3 cut(s)	656, 1760, 1796
HapII	CCGG	1 cut(s)	965
HhaI	GCGC	1 cut(s)	1000
Hin1II	CATG	2 cut(s)	1250, 1498
Hin6I	GCGC	1 cut(s)	998
HinP1I	GCGC	1 cut(s)	998
HindIII	AAGCTT	3 cut(s)	89, 1238, 1698
HinfI	GANTC	5 cut(s)	436, 584, 602, 1907, 2163
HpaII	CCGG	1 cut(s)	965
Hpy166II	GTNNAC	1 cut(s)	1321
Hpy8I	GTNNAC	1 cut(s)	1321
Hpy99I	CGWCG	1 cut(s)	1890
HpyAV	CCTTC	8 cut(s)	269, 484, 565, 625, 872, 1165, 1492, 2081
HpyCH4III	ACNGT	5 cut(s)	53, 342, 1825, 1864, 1890
HpyCH4IV	ACGT	1 cut(s)	1309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpyF3I	CTNAG	6 cut(s)	38, 318, 390, 413, 420, 465
HpySE526I	ACGT	1 cut(s)	1309
Hsp92II	CATG	2 cut(s)	1250, 1498
HspAI	GCGC	1 cut(s)	998
Ksp22I	TGATCA	2 cut(s)	130, 1363
LmnI	GCTCC	6 cut(s)	224, 471, 1360, 1592, 1778, 2090
Lsp1109I	GCAGC	9 cut(s)	160, 165, 168, 1364, 1731, 1782, 2003, 2081, 2084
LweI	GCATC	2 cut(s)	16, 1888
MaeI	CTAG	3 cut(s)	189, 519, 1952
MaeII	ACGT	1 cut(s)	1309
MaeIII	GTNAC	4 cut(s)	1647, 1712, 1930, 2038
MfeI	CAATTG	2 cut(s)	299, 623
MflI	RGATCY	3 cut(s)	416, 743, 1501
MhlI	GDGCHC	7 cut(s)	39, 298, 476, 1072, 1108, 1132, 1841
MlsI	TGGCCA	2 cut(s)	1760, 1796
MluNI	TGGCCA	2 cut(s)	1760, 1796
MlyI	GAGTC	3 cut(s)	445, 593, 1901
MmeI	TCCRAC	1 cut(s)	848
Mox20I	TGGCCA	2 cut(s)	1760, 1796
MroXI	GAANNNNTTC	3 cut(s)	601, 1679, 2162
MscI	TGGCCA	2 cut(s)	1760, 1796
MseI	TTAA	8 cut(s)	114, 948, 1148, 1188, 1217, 1278, 1695, 1731
MslI	CAYNNNNRTG	1 cut(s)	2003
Msp20I	TGGCCA	2 cut(s)	1760, 1796
MspI	CCGG	1 cut(s)	965
MspR9I	CCNGG	1 cut(s)	1762
MunI	CAATTG	2 cut(s)	299, 623
MvaI	CCWGG	1 cut(s)	1762
MwoI	GCNNNNNNNGC	1 cut(s)	480
NdeI	CATATG	1 cut(s)	1348
NlaIII	CATG	2 cut(s)	1250, 1498
NlaIV	GGNNCC	2 cut(s)	473, 792
NmuCI	GTSAC	3 cut(s)	1712, 1930, 2038
NspI	RCATGY	1 cut(s)	1250
PceI	AGGCCT	1 cut(s)	656
PciI	ACATGT	1 cut(s)	1246
PdmI	GAANNNNTTC	3 cut(s)	601, 1679, 2162
PfeI	GAWTC	2 cut(s)	602, 2163
PinAI	ACCGGT	1 cut(s)	964
PkrI	GCNGC	9 cut(s)	155, 158, 175, 1354, 1746, 1772, 1993, 2071, 2074
PleI	GAGTC	3 cut(s)	444, 592, 1901
PpsI	GAGTC	3 cut(s)	444, 592, 1901
PscI	ACATGT	1 cut(s)	1246
Psp6I	CCWGG	1 cut(s)	1760
PspEI	GGTNACC	1 cut(s)	1712
PspGI	CCWGG	1 cut(s)	1760
PspN4I	GGNNCC	2 cut(s)	473, 792
PspPI	GGNCC	2 cut(s)	1575, 1660
PsuI	RGATCY	3 cut(s)	416, 743, 1501
RsaI	GTAC	3 cut(s)	969, 1370, 1827
RsaNI	GTAC	3 cut(s)	968, 1369, 1826
RseI	CAYNNNNRTG	1 cut(s)	2003
SaqAI	TTAA	8 cut(s)	114, 948, 1148, 1188, 1217, 1278, 1695, 1731
SatI	GCNGC	9 cut(s)	154, 157, 174, 1353, 1745, 1771, 1992, 2070, 2073
Sau96I	GGNCC	2 cut(s)	1575, 1660
SchI	GAGTC	3 cut(s)	445, 593, 1901
ScrFI	CCNGG	1 cut(s)	1762
SduI	GDGCHC	7 cut(s)	39, 298, 476, 1072, 1108, 1132, 1841
SfaNI	GCATC	2 cut(s)	16, 1888
SinI	GGWCC	2 cut(s)	1575, 1660
SmiMI	CAYNNNNRTG	1 cut(s)	2003
SmlI	CTYRAG	1 cut(s)	1585
SmoI	CTYRAG	1 cut(s)	1585
SpeI	ACTAGT	1 cut(s)	1951
SseBI	AGGCCT	1 cut(s)	656
SsiI	CCGC	3 cut(s)	1210, 1412, 1739
SspMI	CTAG	3 cut(s)	189, 519, 1952
StuI	AGGCCT	1 cut(s)	656
StyD4I	CCNGG	1 cut(s)	1760
TaaI	ACNGT	5 cut(s)	53, 342, 1825, 1864, 1890
TaiI	ACGT	1 cut(s)	1312
TaqI	TCGA	4 cut(s)	366, 587, 1885, 1981
TfiI	GAWTC	2 cut(s)	602, 2163
Tru1I	TTAA	8 cut(s)	114, 948, 1148, 1188, 1217, 1278, 1695, 1731
Tru9I	TTAA	8 cut(s)	114, 948, 1148, 1188, 1217, 1278, 1695, 1731
TscAI	CASTG	6 cut(s)	58, 75, 234, 347, 1140, 1935
TseFI	GTSAC	3 cut(s)	1712, 1930, 2038
TseI	GCWGC	9 cut(s)	153, 156, 173, 1352, 1744, 1770, 1991, 2069, 2072
Tsp45I	GTSAC	3 cut(s)	1712, 1930, 2038
TspGWI	ACGGA	2 cut(s)	1264, 2057
TspRI	CASTG	6 cut(s)	58, 75, 234, 347, 1140, 1935
VpaK11BI	GGWCC	2 cut(s)	1575, 1660
XapI	RAATTY	4 cut(s)	139, 328, 1874, 1983
XceI	RCATGY	1 cut(s)	1250
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1732, 1789
XmiI	GTMKAC	1 cut(s)	1320
XmnI	GAANNNNTTC	3 cut(s)	601, 1679, 2162
XspI	CTAG	3 cut(s)	189, 519, 1952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.