Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008517

Physical Location & Seq

Genomic Coordinates Forward (+)

989180 .. 993581

Gene Structure 4402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG012500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2052 bp

ATGGATGTGGGTAGGAGGAGATCAGATGCAGGAGTGCTCAGAACTGGGAACAGTGTGGTTGCAGGGTCAGTGTGGGAGAACAGGATGAAGCTTGATGAAGTCAGAGGTGGGATTAAGGTCTTCAATGGTGATCAGGAGAATTCTGAAGAGAGCAGCAGCAGCAGTAATGGGGTTGCTGCAACAACAACTCCTAGCACAAGGTTGAAGAGAGGTCAATCTGTTGGTGGAGCAGTGAGTAATGGAAAGAGAAAGACTTGGAAATCTGATACAAGGGTTGAAGGTTTGGAGAAGAGTGGGGCTCAATTGTCCAGAGGAAAATCTGAGTTGAAGAATTCTGATGAACAGTGCAAGGAGTTGAGTGTTTCTGTCGATGGGATCAAGAACAGCCCAACTCAGGTGAGGTCTGTGAGGAGACTTAGATCTGAGGGAAGCAAGGAGAGTCAAAATGCTGTTGCTTCTGATAAAGCTGAGAGGAGCCCAGTTGGCAGTAGGAAGGCAAGGACTGAATTGCTGAAAAGTGCTAGTGATTTGGGTAAGGAGGAGGGAATTGAGAAGAACTTGGGTCAGTTGAGGAAGGTGAAATCAGAGTCGATCAGGGGAAGTGATTCTTCTGGCAATGCAATTCAATTGGGGAAGGTGAAATCGGAATTGAATAAGGCCTCCCCAGATGAATTGGATAAGGGAGTTGAGAAGTCTGTTGAGGTGATTGAGAAAATCCCAGTTGAGGAGGAGACTGGAGATGGTGGATCTGATGAGAATTGCAAGGAGTTTGGTGTGTGCAGAGAAATGGTGGTTCCAAGCAATGTGGATGTGGTCAAATCTGATCCAACAGAATTGGTGAATGATGTTGCTGATGATGAAGATGGTGAGGAAGAAGAAGAAGGAGAAGAATTGGAGGAAGAGGTGGATGAAGAAATTGAGGTTGAAGTTGAAAAGATGAGCCTTGATATTAAGGAAATCAATGCACCGGTACAAGAGAAAGCACCAGTTGAAGAAGAAGCGCCAGTTGAAGAAAAAGCACCAGTTCAAGAAAAAGCACCAGTTCAAGAAAAAGCACCAGTTCAAGTGAGAGCACCAGTTCAAGAAAAAGCACCAGTTCAAGTGAGAGCACCAGTTCAAGAGAAAGTGAGAGCACCAGTGCAAGAGAAATTAAGCAAGGTTGTGAATGAAGTGAAGGTAGTGAATGAAGTTAAGAAGTTTCAATTATTTGACCGCAAATTAAGAAACCAAGAAGTGAAAAAGCTTCAACATGTTCATCAAAAGCCAGAAACGATCTCCGTTAATCTGAAAAAGCAATCTCCTGTTATGAAACGTGCAGAAGTCTACTCAAATGTCCCTAAACAAACATCATGTAAGTTCTCTCTCTCTCTTTTAAACTCTGCATCCTTTTCTTCTTATTATGGAATTGAGCCTGGACTGTTCTGTTTGTACCAATTAGATGCAGCTCCAAATGATCAGTACCATAGCTTCCCAGAAACACACAGCAGATTGCAAAGTTTAGCGGATTTAGTAATGTGGAAAGATGTATCAAGATCAGTTTTTATATTTGGGATTGGAACATTTGTGATACTATCATCCTCCTACATGAAGGATCTAAATATCAGCTTCATTTCTGTCATATCCTATATGAGCCTTGTTTATCTGGCTGTCATCTTCCTCTTCAGGTCCATCATCTTGAGGGGAGATTATGAAATAGAAAATGCAAATTCTGTGGTGGGTGAAGAAGAAGCAATTTGGTTACTGAAACTGGTCCTGCCTTACTTGAATGAGTTCCTGCTAAAGTTTAAAGCTTTGTTTTCTGGTGACCCTGCCACCACAATTAAGTTGGCAGTGCTGCTCTTTGTTTTGGCCAGGTGTGGCAGCTCCATAACCATTTGGACAATGGCCAAAGTAGGCTTTTTCGGAGTTTTCACCGTACCAAAAGTGTGCTCTTTGTATTCTACCCAGATAACAGTCTTCGGTAAATTCCTGCAATCATTTTCTCCCTTACTAATCATGCATAGTATTATTATTACAAAGTTACTGTACCAAATTTTACACCATTATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

683

Amino Acids

75.67

Weight (kDa)

5.63

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	501 - 651	1.1e-21	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58000 AT5G58000
fragaria_vesca	FvH4_1g01050 FvH4_1g01050 FvH4_1g01050 FvH4_1g01050 FvH4_1g01050 FvH4_1g01050
malus_domestica	MD15G1153100.v1.1
prunus_persica	Prupe.7G261500_v2.0.a1 Prupe.7G261500_v2.0.a1
pyrus_communis	pycom15g13770
rosa_chinensis	RchiOBHm_Chr2g0085811
rosa_laevigata	RLG00000015720
rosa_multiflora	Rmu_sc0012872.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155030
rosa_rugosa	Rorug01G0463400 Rorug01G0463500.1
rosa_samantha	Rh2AG012500 Rh2BG013200 Rh2CG013800 Rh2DG014900
rosa_wichuraiana	Rw2G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1323
AciI	CCGC	2 cut(s)	1213, 1502
AclWI	GGATC	4 cut(s)	383, 754, 818, 1599
AcoI	YGGCCR	2 cut(s)	1848, 1884
AcsI	RAATTY	5 cut(s)	139, 331, 1705, 1964, 2031
AcuI	CTGAAG	2 cut(s)	165, 1645
AfaI	GTAC	5 cut(s)	972, 1430, 1460, 1917, 2027
AfiI	CCNNNNNNNGG	2 cut(s)	394, 724
AflIII	ACRYGT	1 cut(s)	1249
AgeI	ACCGGT	1 cut(s)	967
AjnI	CCWGG	2 cut(s)	1411, 1850
AluBI	AGCT	8 cut(s)	91, 467, 1243, 1445, 1467, 1605, 1790, 1863
AluI	AGCT	8 cut(s)	91, 467, 1243, 1445, 1467, 1605, 1790, 1863
Alw21I	GWGCWC	5 cut(s)	39, 1075, 1111, 1135, 1931
Alw26I	GTCTC	2 cut(s)	406, 725
AlwI	GGATC	4 cut(s)	383, 754, 818, 1599
AoxI	GGCC	3 cut(s)	657, 1848, 1884
ApeKI	GCWGC	7 cut(s)	153, 156, 159, 176, 1442, 1834, 1860
ApoI	RAATTY	5 cut(s)	139, 331, 1705, 1964, 2031
AsiGI	ACCGGT	1 cut(s)	967
Asp700I	GAANNNNTTC	2 cut(s)	604, 1769
AspLEI	GCGC	1 cut(s)	1003
AspS9I	GGNCC	2 cut(s)	1665, 1750
AvaII	GGWCC	2 cut(s)	1665, 1750
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BalI	TGGCCA	2 cut(s)	1850, 1886
BanII	GRGCYC	2 cut(s)	301, 479
BarI	GAAGNNNNNNTAC	2 cut(s)	1451, 1483
BbsI	GAAGAC	2 cut(s)	112, 1948
Bbv12I	GWGCWC	5 cut(s)	39, 1075, 1111, 1135, 1931
BbvI	GCAGC	7 cut(s)	163, 165, 168, 171, 1454, 1821, 1872
BccI	CCATC	4 cut(s)	365, 734, 857, 1676
BciT130I	CCWGG	2 cut(s)	1413, 1852
BclI	TGATCA	2 cut(s)	130, 1453
BcoDI	GTCTC	2 cut(s)	406, 725
BfaI	CTAG	2 cut(s)	192, 522
BfoI	RGCGCY	1 cut(s)	1004
BglI	GCCNNNNNGGC	1 cut(s)	483
BglII	AGATCT	1 cut(s)	419
BisI	GCNGC	7 cut(s)	154, 157, 160, 177, 1443, 1835, 1861
BlsI	GCNGC	7 cut(s)	155, 158, 161, 178, 1444, 1836, 1862
Bme1390I	CCNGG	2 cut(s)	1413, 1852
Bme18I	GGWCC	2 cut(s)	1665, 1750
BmgT120I	GGNCC	2 cut(s)	1665, 1750
BmiI	GGNNCC	2 cut(s)	476, 795
BmrFI	CCNGG	2 cut(s)	1413, 1852
BmrI	ACTGGG	3 cut(s)	54, 473, 713
BmsI	GCATC	3 cut(s)	16, 1391, 1429
BmuI	ACTGGG	3 cut(s)	54, 473, 713
BpiI	GAAGAC	2 cut(s)	112, 1948
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpmI	CTGGAG	1 cut(s)	756
BpuEI	CTTGAG	1 cut(s)	1696
BsaWI	WCCGGW	1 cut(s)	967
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 724
Bse118I	RCCGGY	1 cut(s)	967
Bse3DI	GCAATG	2 cut(s)	622, 808
BseBI	CCWGG	2 cut(s)	1413, 1852
BseGI	GGATG	6 cut(s)	10, 90, 814, 913, 1382, 1574
BseLI	CCNNNNNNNGG	2 cut(s)	394, 724
BseMI	GCAATG	2 cut(s)	622, 808
BseMII	CTCAG	5 cut(s)	52, 312, 407, 414, 459
BseRI	GAGGAG	6 cut(s)	31, 424, 487, 554, 740, 743
BseXI	GCAGC	7 cut(s)	163, 165, 168, 171, 1454, 1821, 1872
BsgI	GTGCAG	2 cut(s)	799, 1335
BshFI	GGCC	3 cut(s)	659, 1850, 1886
BshTI	ACCGGT	1 cut(s)	967
BsiHKAI	GWGCWC	5 cut(s)	39, 1075, 1111, 1135, 1931
BsiSI	CCGG	1 cut(s)	968
BslFI	GGGAC	1 cut(s)	1319
BslI	CCNNNNNNNGG	2 cut(s)	394, 724
BsmAI	GTCTC	2 cut(s)	406, 725
BsmFI	GGGAC	1 cut(s)	1319
BsnI	GGCC	3 cut(s)	659, 1850, 1886
Bsp1286I	GDGCHC	7 cut(s)	39, 301, 479, 1075, 1111, 1135, 1931
BspACI	CCGC	2 cut(s)	1213, 1502
BspANI	GGCC	3 cut(s)	659, 1850, 1886
BspCNI	CTCAG	5 cut(s)	51, 313, 406, 415, 460
BspLI	GGNNCC	2 cut(s)	476, 795
BspPI	GGATC	4 cut(s)	383, 754, 818, 1599
BsrDI	GCAATG	2 cut(s)	622, 808
BsrFI	RCCGGY	1 cut(s)	967
BssAI	RCCGGY	1 cut(s)	967
Bst2UI	CCWGG	2 cut(s)	1413, 1852
Bst4CI	ACNGT	6 cut(s)	53, 345, 1419, 1915, 1954, 2025
Bst6I	CTCTTC	5 cut(s)	141, 200, 284, 894, 1664
BstDEI	CTNAG	6 cut(s)	38, 321, 393, 416, 423, 468
BstEII	GGTNACC	1 cut(s)	1802
BstF5I	GGATG	6 cut(s)	10, 90, 814, 913, 1382, 1574
BstH2I	RGCGCY	1 cut(s)	1004
BstHHI	GCGC	1 cut(s)	1003
BstMAI	GTCTC	2 cut(s)	406, 725
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 483
BstNI	CCWGG	2 cut(s)	1413, 1852
BstNSI	RCATGY	1 cut(s)	1253
BstPI	GGTNACC	1 cut(s)	1802
BstSCI	CCNGG	2 cut(s)	1411, 1850
BstV1I	GCAGC	7 cut(s)	163, 165, 168, 171, 1454, 1821, 1872
BstV2I	GAAGAC	2 cut(s)	112, 1948
BstX2I	RGATCY	3 cut(s)	419, 746, 1591
BstYI	RGATCY	3 cut(s)	419, 746, 1591
BsuRI	GGCC	3 cut(s)	659, 1850, 1886
BtsCI	GGATG	6 cut(s)	10, 90, 814, 913, 1382, 1574
BtsI	GCAGTG	2 cut(s)	237, 1836
BtsIMutI	CAGTG	6 cut(s)	58, 75, 237, 350, 1143, 1836
CfoI	GCGC	1 cut(s)	1003
Cfr10I	RCCGGY	1 cut(s)	967
Cfr13I	GGNCC	2 cut(s)	1665, 1750
Csp6I	GTAC	5 cut(s)	971, 1429, 1459, 1916, 2026
CspAI	ACCGGT	1 cut(s)	967
CspCI	CAANNNNNGTGG	4 cut(s)	786, 821, 1692, 1727
CviAII	CATG	4 cut(s)	1250, 1350, 1585, 1996
CviQI	GTAC	5 cut(s)	971, 1429, 1459, 1916, 2026
DdeI	CTNAG	6 cut(s)	38, 321, 393, 416, 423, 468
DraI	TTTAAA	2 cut(s)	1374, 1786
EaeI	YGGCCR	2 cut(s)	1848, 1884
Eam1104I	CTCTTC	5 cut(s)	141, 200, 284, 894, 1664
EarI	CTCTTC	5 cut(s)	141, 200, 284, 894, 1664
Eco147I	AGGCCT	1 cut(s)	659
Eco24I	GRGCYC	2 cut(s)	301, 479
Eco47I	GGWCC	2 cut(s)	1665, 1750
Eco57I	CTGAAG	2 cut(s)	165, 1645
Eco91I	GGTNACC	1 cut(s)	1802
EcoO65I	GGTNACC	1 cut(s)	1802
EcoRI	GAATTC	2 cut(s)	139, 331
EcoRII	CCWGG	2 cut(s)	1411, 1850
EcoT22I	ATGCAT	1 cut(s)	2001
EcoT38I	GRGCYC	2 cut(s)	301, 479
FaeI	CATG	4 cut(s)	1253, 1353, 1588, 1999
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FaqI	GGGAC	1 cut(s)	1319
FatI	CATG	4 cut(s)	1249, 1349, 1584, 1995
FbaI	TGATCA	2 cut(s)	130, 1453
FblI	GTMKAC	1 cut(s)	1323
Fnu4HI	GCNGC	7 cut(s)	154, 157, 160, 177, 1443, 1835, 1861
FokI	GGATG	6 cut(s)	17, 97, 821, 920, 1369, 1561
FriOI	GRGCYC	2 cut(s)	301, 479
Fsp4HI	GCNGC	7 cut(s)	154, 157, 160, 177, 1443, 1835, 1861
FspBI	CTAG	2 cut(s)	192, 522
GlaI	GCGC	1 cut(s)	1002
GluI	GCNGC	7 cut(s)	154, 157, 160, 177, 1443, 1835, 1861
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	1004
HaeIII	GGCC	3 cut(s)	659, 1850, 1886
HapII	CCGG	1 cut(s)	968
HhaI	GCGC	1 cut(s)	1003
Hin1II	CATG	4 cut(s)	1253, 1353, 1588, 1999
Hin6I	GCGC	1 cut(s)	1001
HinP1I	GCGC	1 cut(s)	1001
HindIII	AAGCTT	3 cut(s)	89, 1241, 1788
HinfI	GANTC	3 cut(s)	439, 587, 605
HpaII	CCGG	1 cut(s)	968
Hpy166II	GTNNAC	1 cut(s)	1324
Hpy188III	TCNNGA	9 cut(s)	134, 309, 379, 1028, 1046, 1082, 1118, 1530, 1675
Hpy8I	GTNNAC	1 cut(s)	1324
HpyAV	CCTTC	7 cut(s)	272, 487, 568, 628, 875, 1168, 1582
HpyCH4III	ACNGT	6 cut(s)	53, 345, 1419, 1915, 1954, 2025
HpyCH4IV	ACGT	1 cut(s)	1312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 483
HpyF3I	CTNAG	6 cut(s)	38, 321, 393, 416, 423, 468
HpySE526I	ACGT	1 cut(s)	1312
Hsp92II	CATG	4 cut(s)	1253, 1353, 1588, 1999
HspAI	GCGC	1 cut(s)	1001
Ksp22I	TGATCA	2 cut(s)	130, 1453
LmnI	GCTCC	4 cut(s)	227, 474, 1450, 1868
Lsp1109I	GCAGC	7 cut(s)	163, 165, 168, 171, 1454, 1821, 1872
LweI	GCATC	3 cut(s)	16, 1391, 1429
MaeI	CTAG	2 cut(s)	192, 522
MaeII	ACGT	1 cut(s)	1312
MaeIII	GTNAC	3 cut(s)	1737, 1802, 2019
MfeI	CAATTG	2 cut(s)	302, 626
MflI	RGATCY	3 cut(s)	419, 746, 1591
MhlI	GDGCHC	7 cut(s)	39, 301, 479, 1075, 1111, 1135, 1931
MlsI	TGGCCA	2 cut(s)	1850, 1886
MluNI	TGGCCA	2 cut(s)	1850, 1886
MlyI	GAGTC	2 cut(s)	448, 596
MmeI	TCCRAC	1 cut(s)	851
Mox20I	TGGCCA	2 cut(s)	1850, 1886
Mph1103I	ATGCAT	1 cut(s)	2001
MroXI	GAANNNNTTC	2 cut(s)	604, 1769
MscI	TGGCCA	2 cut(s)	1850, 1886
MseI	TTAA	9 cut(s)	114, 951, 1151, 1191, 1220, 1281, 1373, 1785, 1821
Msp20I	TGGCCA	2 cut(s)	1850, 1886
MspI	CCGG	1 cut(s)	968
MspR9I	CCNGG	2 cut(s)	1413, 1852
MunI	CAATTG	2 cut(s)	302, 626
MvaI	CCWGG	2 cut(s)	1413, 1852
MwoI	GCNNNNNNNGC	2 cut(s)	159, 483
NlaIII	CATG	4 cut(s)	1253, 1353, 1588, 1999
NlaIV	GGNNCC	2 cut(s)	476, 795
NmuCI	GTSAC	1 cut(s)	1802
NsiI	ATGCAT	1 cut(s)	2001
NspI	RCATGY	1 cut(s)	1253
PceI	AGGCCT	1 cut(s)	659
PciI	ACATGT	1 cut(s)	1249
PdmI	GAANNNNTTC	2 cut(s)	604, 1769
PfeI	GAWTC	1 cut(s)	605
PinAI	ACCGGT	1 cut(s)	967
PkrI	GCNGC	7 cut(s)	155, 158, 161, 178, 1444, 1836, 1862
PleI	GAGTC	2 cut(s)	447, 595
PpsI	GAGTC	2 cut(s)	447, 595
PscI	ACATGT	1 cut(s)	1249
Psp6I	CCWGG	2 cut(s)	1411, 1850
PspEI	GGTNACC	1 cut(s)	1802
PspGI	CCWGG	2 cut(s)	1411, 1850
PspN4I	GGNNCC	2 cut(s)	476, 795
PspPI	GGNCC	2 cut(s)	1665, 1750
PsuI	RGATCY	3 cut(s)	419, 746, 1591
RsaI	GTAC	5 cut(s)	972, 1430, 1460, 1917, 2027
RsaNI	GTAC	5 cut(s)	971, 1429, 1459, 1916, 2026
SaqAI	TTAA	9 cut(s)	114, 951, 1151, 1191, 1220, 1281, 1373, 1785, 1821
SatI	GCNGC	7 cut(s)	154, 157, 160, 177, 1443, 1835, 1861
Sau96I	GGNCC	2 cut(s)	1665, 1750
SchI	GAGTC	2 cut(s)	448, 596
ScrFI	CCNGG	2 cut(s)	1413, 1852
SduI	GDGCHC	7 cut(s)	39, 301, 479, 1075, 1111, 1135, 1931
SfaNI	GCATC	3 cut(s)	16, 1391, 1429
SinI	GGWCC	2 cut(s)	1665, 1750
SmlI	CTYRAG	1 cut(s)	1675
SmoI	CTYRAG	1 cut(s)	1675
SseBI	AGGCCT	1 cut(s)	659
SsiI	CCGC	2 cut(s)	1213, 1502
SspMI	CTAG	2 cut(s)	192, 522
StuI	AGGCCT	1 cut(s)	659
StyD4I	CCNGG	2 cut(s)	1411, 1850
TaaI	ACNGT	6 cut(s)	53, 345, 1419, 1915, 1954, 2025
TaiI	ACGT	1 cut(s)	1315
TaqI	TCGA	2 cut(s)	369, 590
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	9 cut(s)	114, 951, 1151, 1191, 1220, 1281, 1373, 1785, 1821
Tru9I	TTAA	9 cut(s)	114, 951, 1151, 1191, 1220, 1281, 1373, 1785, 1821
TscAI	CASTG	6 cut(s)	58, 75, 237, 350, 1143, 1836
TseFI	GTSAC	1 cut(s)	1802
TseI	GCWGC	7 cut(s)	153, 156, 159, 176, 1442, 1834, 1860
Tsp45I	GTSAC	1 cut(s)	1802
TspGWI	ACGGA	1 cut(s)	1267
TspRI	CASTG	6 cut(s)	58, 75, 237, 350, 1143, 1836
VpaK11BI	GGWCC	2 cut(s)	1665, 1750
XapI	RAATTY	5 cut(s)	139, 331, 1705, 1964, 2031
XceI	RCATGY	1 cut(s)	1253
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1822, 1879
XmiI	GTMKAC	1 cut(s)	1323
XmnI	GAANNNNTTC	2 cut(s)	604, 1769
XspI	CTAG	2 cut(s)	192, 522
Zsp2I	ATGCAT	1 cut(s)	2001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.