Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008517

Physical Location & Seq

Genomic Coordinates Forward (+)

1089316 .. 1098127

Gene Structure 8812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG013800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3408 bp

ATGGATGTGGGTAGGAGGAGATCAGATGCAGGAGTGCTCAGAACTGGGAACAGTGTGGTTGCAGGGTCAGTGTGGGAGAACAGGATGAAGCTTGATGAAGTCAGAGGTGGGATTAAGGTCTTCAATGGTGATCAGGAGAATTCTGAAGAGAGCAGCAGCAGCAGTAATGGGGTTGCTGCAACAACAACTCCTAGCACAAGGTTGAAGAGAGGTCAATCTGTTGGTGGAGCAGTGAGTAATGGAAAGAGAAAGACTTGGAAATCTGATACAAGGGTTGAAGGTTTGGAGAAGAGTGGGGCTCAATTGTCCAGAGGAAAATCTGAGTTGAAGAATTATGATGAACAGTGCAAGGAGTTGAGTGCTTCTGTCGATGGGATCAAGAACAGCCCAACTCAGGTGAGGTCTGTGAGGAGACTTAGATCTGAGGGAAGCAAGGAGAGTCAAAATGCTGTTGCTTCTGATAAAGCTGAGAGGAGCCCAGTTGGCAGTAGGAAGCCAAGGACTGAATTGCTGAAAAGTGCTAGTGATTTGGGTAAGGAGGAGGGAATTGAGAAGAACTTGGGTCAGTTGAGGAAGGTGAAATCAGAATCGATCAGGGGAAGTGATTCTTCTGGCAATGCAATTCAATTGGGGAAGGTGAAATCGGAATTGAATAAGGCCTCCCCAGATGAATTGGATAAGGGAGTTGAGAAGTCTGTTGAGGTGATTGAGAAAATCCCAGTTGAGGAGGAGACTGGAGATGGTGGATCTGATGAGAATTGCAAGGAGTTTGGTGTGTGCAGAGAAATGGTGGTTCCAAGCAATGTGGATGTGGTCAAATCTGATCCAACAGAATTGGTGAATGATGTTGCTGATGATGAAGATGGTGATGAAGAAGAAGAATTGGAGGAAGAGGTGGATGAAGAAATTGAGGTTGAAGTTGAAAAGATGAGCCTTGATATTAAGGAAATCAATGCACCGGTACAAGAGAAAGCACCAGTTGAAGAAGAAGCGCCAGTTGAAGAAAAAGCACCAGTTCAAGTGAGAGCACCAGTTCATGAAAAAGCACCAGTTCAAGTGAGAGCACCAGTTCAAGAGAAAGTGAGAGCACCAGTGCAAGAGAAATTAAGCAAGGTTGTGAATGAAGTGAAGGTAGTGAATGAAGTTAAGAAGTTTCAATTATTTGACCGCAAATTTAGAAACCAAGAAGTGAAAAAGCTTCAACATGTTCATCAAAAGCCAGAAACGATCTCCGTTAATCTGAAAAAGCAATCTCCTGTTATGAAACGTGCAGAAGTCTACTCAAATGTCCCTAAACAAACATCATATGCAGCTCCAAATGATCAGTACCATAGCTTCCCAGAAACACACAGCAGATTGCAAAGTTTAGCGGATTTAGTAATGTGGAAAGATGTATCAAGATCAGTTTTTATATTTGGGATTGGAACATTTGTGATACTATCATCCTCCTACATGAAGGATCTAAATATCAGCTTCATTTCTGTCATATCCTATATGAGCCTTGTCTATCTGGCTGTCATCTTCCTCTTCAGGTCCATCATCTTGAGGGGAGCTTATGAAGTAGAAAATGCAGACTCTGTGGTGGGTGAAGAAGAAGCAATTTGGTTACTGAAACTGGTCCTGCCTTACTTGAATGAGTTCCTGCTAAAGTTTAAAGCTTTGTTTTCTGGTGACCCTGCCACCACAATTAAGTTGGCAGTGCTGCTCTTTGTTTTGGCCAGGTGTGGCAGCTCCATAACCATTTGGACAATGGCCAAAGTAGGCTTTTTCGGAGTTTTCACCGTACCAAAGGTGTGCTCTTTGTATTCTACCCAGATAACAGTCTTCGCTAAATTTTGGGTTCGGCGGTTTCGGGATGCTTGGGACTCCTGCTCTCACAAGAAACCAGTGACCATTGTGATCTTTCTACTAGTATGGAACTTATCTTCAGTAGAGGCTCGAATTTGGGCAGCATTCATTTTGGTGGTGGCGTTCCGATACTATCAACAGAACTTCTCTGCAACCCTAACCCCAACAACTGCTTCGCAACCCATCACGATGAGTCTTGCCGAGTCCCCAGTGCACTCTTCTAGCAGTGATGGGTTTGCTGGGTTGCTTGAGAGAGAACTAGAGTCTGGTTCTTCGGAGTCGTCACCAGATGAAGGAGATAAAGCAGCTGATGACGATGGCAGTGATGTTGAAAGTGAGAGCAGGATAAAAAGGCGTAAGGTAGAGAATCTGGAAAGCTTAGAGGAAACCGTTGCGTCAACTTCACAAGGACTCTCAGAAGAAAAGTCAGAAGCAACTGCAATAGAGGATATGTGTGCACATCCTGGTTCATTTGGAGATATGTGTTTTCTTTGTGGCCAGAGGTTGATTGAGCAGTCTGGTGTGACATTTGGGTACATTCACAAGGGATTAAGACTTAATAATGATGAAATCGACCGGTTACGCAACACTGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTTGATCTTGATCATACGCTGCTAAATTCCACCCAGCTGAATCATATGACGGCAGAGGAAGAATATTTGATGAGCCCACCAGATTCTCTGCCAGATGTTTTGAAAGGCAGCCTCTTCAGACTAGACTTTATGCGCATGATGACCAAGTTAAGGCCCTTCATTAAGACATTTTTGAAGGAAGCCAGTGAAATATTTGAAATGTATGTGTATACAATGGGTGACCGAGCCTATGCATTGGAAATGGCCAAGTTGCTTGATCCCAAAAAAGAGTACTTTGGTGATAGAGTGATATCACGCGATGATGGCACCCAAAAACATCAAAAGGGTCTAGATATTGTGCTTGGGCAAGAAAGTGCTGTTTTGATACTGGATGATACAGAGAATGCGTGGATAAAGCACAAGGACAATCTAATCTTGATGGAAAGATATCATTTCTTTAGATCTAGTTGTGCCCAATTTGGGTTCAATTGTGAGTCTCTTTCGGAGTTGAAGAGTGATGAGTGTGAGCCTGAAGGAGCTCTTGCAAATGTTCTTGACCTTCTTAAGCGAATTCACAAGATTTTCTTTTATGAATTGGAAGGCAATCTTATAGATAGAGATGTGAGGCAGGTTCTGAAAACCGTTAGAAAGGAAGTTTTGAAGGGGTGCAAAGTTGTGTTCAGCCGTATAATTCCTTCAAAAGTCCAGGCTGATAGTCATCACCTGTGGAAGATGGCAGAGCAGCTGGGAGCCATATGTTCAACCGAGGTGGATTCATCAGTGACCCATGTAGTTGCATTAGATGCGGGAACTGAAAAGTCTCGCTGGGCAGTGAAACAGAATAAGTTTTTGGTCCATCCTCTCTGGCTGGAAGCAGTGAATTATATGTGGCGAAAGCAACCGGAAGAGAAGTTTCCTGTCACTGAAACGAAATCGAAAACCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

1135

Amino Acids

127.31

Weight (kDa)

5.61

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	457 - 610	2.1e-21	Reticulon
NIF	PF03031	825 - 971	6.9e-26	NLI interacting factor-like phosphatase
BRCT	PF00533	1038 - 1111	4.2e-06	BRCA1 C Terminus (BRCT) domain
PTCB-BRCT	PF12738	1057 - 1109	1.2e-06	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58000 AT5G58000
fragaria_vesca	FvH4_1g01050 FvH4_1g01050 FvH4_1g01050 FvH4_1g01050 FvH4_1g01050 FvH4_1g01050
malus_domestica	MD15G1153100.v1.1
prunus_persica	Prupe.7G261500_v2.0.a1 Prupe.7G261500_v2.0.a1
pyrus_communis	pycom15g13770
rosa_chinensis	RchiOBHm_Chr2g0085811
rosa_laevigata	RLG00000015720
rosa_multiflora	Rmu_sc0012872.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155030
rosa_rugosa	Rorug01G0463400 Rorug01G0463500.1
rosa_samantha	Rh2AG012500 Rh2BG013200 Rh2CG013800 Rh2DG014900
rosa_wichuraiana	Rw2G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2615
Acc36I	ACCTGC	1 cut(s)	3079
AccB1I	GGYRCC	1 cut(s)	2786
AccI	GTMKAC	2 cut(s)	1278, 2690
AccII	CGCG	1 cut(s)	2778
AciI	CCGC	4 cut(s)	1168, 1370, 1846, 3266
AclWI	GGATC	5 cut(s)	383, 754, 818, 1467, 2732
AcoI	YGGCCR	4 cut(s)	1716, 1752, 2344, 2724
AcsI	RAATTY	6 cut(s)	139, 1172, 1832, 1941, 2506, 3030
AcuI	CTGAAG	5 cut(s)	165, 1513, 1911, 2581, 3012
AfaI	GTAC	6 cut(s)	963, 1328, 1785, 2384, 2481, 2753
AfiI	CCNNNNNNNGG	5 cut(s)	394, 724, 2141, 2631, 2940
AflII	CTTAAG	1 cut(s)	3023
AflIII	ACRYGT	1 cut(s)	1204
AgeI	ACCGGT	2 cut(s)	958, 2424
AhlI	ACTAGT	1 cut(s)	1909
AjnI	CCWGG	3 cut(s)	1718, 2311, 3165
AjuI	GAANNNNNNNTTGG	6 cut(s)	2005, 2037, 2459, 2491, 3293, 3325
Alw21I	GWGCWC	8 cut(s)	39, 1030, 1066, 1090, 1799, 2064, 2308, 3001
Alw26I	GTCTC	4 cut(s)	406, 725, 2961, 3285
Alw44I	GTGCAC	2 cut(s)	2060, 2304
AlwI	GGATC	5 cut(s)	383, 754, 818, 1467, 2732
AlwNI	CAGNNNCTG	2 cut(s)	1577, 3094
AoxI	GGCC	6 cut(s)	657, 1716, 1752, 2344, 2633, 2724
ApaLI	GTGCAC	2 cut(s)	2060, 2304
ApoI	RAATTY	6 cut(s)	139, 1172, 1832, 1941, 2506, 3030
AsiGI	ACCGGT	2 cut(s)	958, 2424
Asp700I	GAANNNNTTC	2 cut(s)	604, 1637
AspLEI	GCGC	2 cut(s)	994, 2616
AspS9I	GGNCC	4 cut(s)	1533, 1618, 2634, 3313
AvaII	GGWCC	3 cut(s)	1533, 1618, 3313
BaeGI	GKGCMC	3 cut(s)	2064, 2308, 2935
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BalI	TGGCCA	4 cut(s)	1718, 1754, 2346, 2726
BanI	GGYRCC	1 cut(s)	2786
BanII	GRGCYC	4 cut(s)	301, 479, 2558, 3001
BarI	GAAGNNNNNNTAC	4 cut(s)	1319, 1351, 3139, 3171
BbsI	GAAGAC	2 cut(s)	112, 1816
Bbv12I	GWGCWC	8 cut(s)	39, 1030, 1066, 1090, 1799, 2064, 2308, 3001
BceAI	ACGGC	2 cut(s)	2547, 3129
BciT130I	CCWGG	3 cut(s)	1720, 2313, 3167
BclI	TGATCA	3 cut(s)	130, 1321, 2491
BcoDI	GTCTC	4 cut(s)	406, 725, 2961, 3285
BcuI	ACTAGT	1 cut(s)	1909
BfaI	CTAG	8 cut(s)	192, 522, 1910, 2070, 2108, 2603, 2810, 2925
BfoI	RGCGCY	1 cut(s)	995
BfrI	CTTAAG	1 cut(s)	3023
BfuAI	ACCTGC	1 cut(s)	3079
BglI	GCCNNNNNGGC	1 cut(s)	483
BglII	AGATCT	2 cut(s)	419, 2921
BmcAI	AGTACT	1 cut(s)	2753
Bme1390I	CCNGG	3 cut(s)	1720, 2313, 3167
Bme18I	GGWCC	3 cut(s)	1533, 1618, 3313
BmgT120I	GGNCC	4 cut(s)	1533, 1618, 2634, 3313
BmiI	GGNNCC	4 cut(s)	476, 795, 2788, 3211
BmrFI	CCNGG	3 cut(s)	1720, 2313, 3167
BmrI	ACTGGG	4 cut(s)	54, 473, 713, 2051
BmsI	GCATC	3 cut(s)	16, 1846, 3253
BmuI	ACTGGG	4 cut(s)	54, 473, 713, 2051
BpiI	GAAGAC	2 cut(s)	112, 1816
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpmI	CTGGAG	1 cut(s)	756
BpuEI	CTTGAG	2 cut(s)	1564, 2117
Bsa29I	ATCGAT	1 cut(s)	590
BsaBI	GATNNNNATC	2 cut(s)	2490, 3177
BsaJI	CCNNGG	2 cut(s)	497, 3225
BsaWI	WCCGGW	3 cut(s)	958, 2424, 3361
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	5 cut(s)	394, 724, 2141, 2631, 2940
Bse118I	RCCGGY	2 cut(s)	958, 2424
Bse3DI	GCAATG	2 cut(s)	622, 808
Bse8I	GATNNNNATC	2 cut(s)	2490, 3177
BseBI	CCWGG	3 cut(s)	1720, 2313, 3167
BseCI	ATCGAT	1 cut(s)	590
BseDI	CCNNGG	2 cut(s)	497, 3225
BseGI	GGATG	9 cut(s)	10, 90, 814, 904, 1442, 1861, 2308, 2857, 3316
BseJI	GATNNNNATC	2 cut(s)	2490, 3177
BseLI	CCNNNNNNNGG	5 cut(s)	394, 724, 2141, 2631, 2940
BseMI	GCAATG	2 cut(s)	622, 808
BseMII	CTCAG	6 cut(s)	52, 312, 407, 414, 459, 2277
BseRI	GAGGAG	6 cut(s)	31, 424, 487, 554, 740, 743
BseSI	GKGCMC	3 cut(s)	2064, 2308, 2935
BseYI	CCCAGC	4 cut(s)	2087, 2514, 3205, 3285
BsgI	GTGCAG	2 cut(s)	799, 1290
Bsh1236I	CGCG	1 cut(s)	2778
Bsh1285I	CGRYCG	1 cut(s)	2425
BshFI	GGCC	6 cut(s)	659, 1718, 1754, 2346, 2635, 2726
BshNI	GGYRCC	1 cut(s)	2786
BshTI	ACCGGT	2 cut(s)	958, 2424
BshVI	ATCGAT	1 cut(s)	590
BsiEI	CGRYCG	1 cut(s)	2425
BsiHKAI	GWGCWC	8 cut(s)	39, 1030, 1066, 1090, 1799, 2064, 2308, 3001
BsiSI	CCGG	3 cut(s)	959, 2425, 3362
BslFI	GGGAC	3 cut(s)	1274, 1877, 2038
BslI	CCNNNNNNNGG	5 cut(s)	394, 724, 2141, 2631, 2940
BsmAI	GTCTC	4 cut(s)	406, 725, 2961, 3285
BsmFI	GGGAC	3 cut(s)	1274, 1877, 2038
BsmI	GAATGC	2 cut(s)	1952, 2869
BsnI	GGCC	6 cut(s)	659, 1718, 1754, 2346, 2635, 2726
BspACI	CCGC	4 cut(s)	1168, 1370, 1846, 3266
BspANI	GGCC	6 cut(s)	659, 1718, 1754, 2346, 2635, 2726
BspCNI	CTCAG	6 cut(s)	51, 313, 406, 415, 460, 2276
BspDI	ATCGAT	1 cut(s)	590
BspFNI	CGCG	1 cut(s)	2778
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	4 cut(s)	476, 795, 2788, 3211
BspMI	ACCTGC	1 cut(s)	3079
BspPI	GGATC	5 cut(s)	383, 754, 818, 1467, 2732
BspT107I	GGYRCC	1 cut(s)	2786
BspTI	CTTAAG	1 cut(s)	3023
BsrDI	GCAATG	2 cut(s)	622, 808
BsrFI	RCCGGY	2 cut(s)	958, 2424
BssAI	RCCGGY	2 cut(s)	958, 2424
BssECI	CCNNGG	2 cut(s)	497, 3225
BssNAI	GTATAC	1 cut(s)	2691
BssT1I	CCWWGG	1 cut(s)	497
Bst1107I	GTATAC	1 cut(s)	2691
Bst2UI	CCWGG	3 cut(s)	1720, 2313, 3167
Bst4CI	ACNGT	6 cut(s)	53, 345, 1783, 1822, 2239, 3103
Bst6I	CTCTTC	9 cut(s)	141, 200, 284, 885, 1532, 2071, 2600, 2966, 3360
BstAFI	CTTAAG	1 cut(s)	3023
BstAPI	GCANNNNNTGC	1 cut(s)	3263
BstDEI	CTNAG	8 cut(s)	38, 321, 393, 416, 423, 468, 2227, 2263
BstEII	GGTNACC	2 cut(s)	1670, 2699
BstF5I	GGATG	9 cut(s)	10, 90, 814, 904, 1442, 1861, 2308, 2857, 3316
BstFNI	CGCG	1 cut(s)	2778
BstH2I	RGCGCY	1 cut(s)	995
BstHHI	GCGC	2 cut(s)	994, 2616
BstMAI	GTCTC	4 cut(s)	406, 725, 2961, 3285
BstMCI	CGRYCG	1 cut(s)	2425
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 483, 2784, 3263
BstNI	CCWGG	3 cut(s)	1720, 2313, 3167
BstNSI	RCATGY	1 cut(s)	1208
BstPI	GGTNACC	2 cut(s)	1670, 2699
BstSCI	CCNGG	3 cut(s)	1718, 2311, 3165
BstSLI	GKGCMC	3 cut(s)	2064, 2308, 2935
BstUI	CGCG	1 cut(s)	2778
BstV2I	GAAGAC	2 cut(s)	112, 1816
BstX2I	RGATCY	4 cut(s)	419, 746, 1459, 2921
BstYI	RGATCY	4 cut(s)	419, 746, 1459, 2921
BstZ17I	GTATAC	1 cut(s)	2691
Bsu15I	ATCGAT	1 cut(s)	590
BsuRI	GGCC	6 cut(s)	659, 1718, 1754, 2346, 2635, 2726
BsuTUI	ATCGAT	1 cut(s)	590
BtgZI	GCGATG	1 cut(s)	2793
BtsCI	GGATG	9 cut(s)	10, 90, 814, 904, 1442, 1861, 2308, 2857, 3316
BtsI	GCAGTG	6 cut(s)	237, 1704, 2080, 2176, 3297, 3342
BveI	ACCTGC	1 cut(s)	3079
CaiI	CAGNNNCTG	2 cut(s)	1577, 3094
CciI	TCATGA	1 cut(s)	1036
CfoI	GCGC	2 cut(s)	994, 2616
Cfr10I	RCCGGY	2 cut(s)	958, 2424
Cfr13I	GGNCC	4 cut(s)	1533, 1618, 2634, 3313
ClaI	ATCGAT	1 cut(s)	590
CseI	GACGC	1 cut(s)	2232
Csp6I	GTAC	6 cut(s)	962, 1327, 1784, 2383, 2480, 2752
CspAI	ACCGGT	2 cut(s)	958, 2424
CspCI	CAANNNNNGTGG	4 cut(s)	786, 821, 3210, 3245
CviAII	CATG	5 cut(s)	1037, 1205, 1453, 2617, 3248
CviQI	GTAC	6 cut(s)	962, 1327, 1784, 2383, 2480, 2752
DdeI	CTNAG	8 cut(s)	38, 321, 393, 416, 423, 468, 2227, 2263
DraI	TTTAAA	1 cut(s)	1654
EaeI	YGGCCR	4 cut(s)	1716, 1752, 2344, 2724
Eam1104I	CTCTTC	9 cut(s)	141, 200, 284, 885, 1532, 2071, 2600, 2966, 3360
EarI	CTCTTC	9 cut(s)	141, 200, 284, 885, 1532, 2071, 2600, 2966, 3360
Ecl136II	GAGCTC	1 cut(s)	2999
Eco130I	CCWWGG	1 cut(s)	497
Eco147I	AGGCCT	1 cut(s)	659
Eco24I	GRGCYC	4 cut(s)	301, 479, 2558, 3001
Eco32I	GATATC	2 cut(s)	2772, 2909
Eco47I	GGWCC	3 cut(s)	1533, 1618, 3313
Eco53kI	GAGCTC	1 cut(s)	2999
Eco57I	CTGAAG	5 cut(s)	165, 1513, 1911, 2581, 3012
Eco91I	GGTNACC	2 cut(s)	1670, 2699
EcoICRI	GAGCTC	1 cut(s)	2999
EcoO109I	RGGNCCY	1 cut(s)	2634
EcoO65I	GGTNACC	2 cut(s)	1670, 2699
EcoRI	GAATTC	2 cut(s)	139, 3030
EcoRII	CCWGG	3 cut(s)	1718, 2311, 3165
EcoRV	GATATC	2 cut(s)	2772, 2909
EcoT14I	CCWWGG	1 cut(s)	497
EcoT22I	ATGCAT	1 cut(s)	2716
EcoT38I	GRGCYC	4 cut(s)	301, 479, 2558, 3001
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	5 cut(s)	1040, 1208, 1456, 2620, 3251
FalI	AAGNNNNNCTT	8 cut(s)	592, 624, 2985, 3017, 3029, 3061, 3051, 3083
FaqI	GGGAC	3 cut(s)	1274, 1877, 2038
FatI	CATG	5 cut(s)	1036, 1204, 1452, 2616, 3247
FauI	CCCGC	1 cut(s)	3259
FauNDI	CATATG	3 cut(s)	1306, 2526, 3215
FbaI	TGATCA	3 cut(s)	130, 1321, 2491
FblI	GTMKAC	2 cut(s)	1278, 2690
FokI	GGATG	9 cut(s)	17, 97, 821, 911, 1429, 1868, 2295, 2864, 3303
FriOI	GRGCYC	4 cut(s)	301, 479, 2558, 3001
FspAI	RTGCGCAY	1 cut(s)	2615
FspBI	CTAG	8 cut(s)	192, 522, 1910, 2070, 2108, 2603, 2810, 2925
FspI	TGCGCA	1 cut(s)	2615
GlaI	GCGC	2 cut(s)	993, 2615
GsaI	CCCAGC	4 cut(s)	2091, 2518, 3209, 3289
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	995
HaeIII	GGCC	6 cut(s)	659, 1718, 1754, 2346, 2635, 2726
HapII	CCGG	3 cut(s)	959, 2425, 3362
HgaI	GACGC	1 cut(s)	2232
HhaI	GCGC	2 cut(s)	994, 2616
Hin1II	CATG	5 cut(s)	1040, 1208, 1456, 2620, 3251
Hin6I	GCGC	2 cut(s)	992, 2614
HinP1I	GCGC	2 cut(s)	992, 2614
HincII	GTYRAC	1 cut(s)	2247
HindII	GTYRAC	1 cut(s)	2247
HindIII	AAGCTT	4 cut(s)	89, 1196, 1656, 2224
HpaII	CCGG	3 cut(s)	959, 2425, 3362
Hpy166II	GTNNAC	5 cut(s)	1279, 2062, 2247, 2306, 2691
Hpy8I	GTNNAC	5 cut(s)	1279, 2062, 2247, 2306, 2691
HpyCH4III	ACNGT	6 cut(s)	53, 345, 1783, 1822, 2239, 3103
HpyCH4IV	ACGT	1 cut(s)	1267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 483, 2784, 3263
HpyF3I	CTNAG	8 cut(s)	38, 321, 393, 416, 423, 468, 2227, 2263
HpySE526I	ACGT	1 cut(s)	1267
Hsp92II	CATG	5 cut(s)	1040, 1208, 1456, 2620, 3251
HspAI	GCGC	2 cut(s)	992, 2614
Ksp22I	TGATCA	3 cut(s)	130, 1321, 2491
LmnI	GCTCC	7 cut(s)	227, 474, 1318, 1550, 1736, 2996, 3209
LweI	GCATC	3 cut(s)	16, 1846, 3253
MaeI	CTAG	8 cut(s)	192, 522, 1910, 2070, 2108, 2603, 2810, 2925
MaeII	ACGT	1 cut(s)	1267
MaeIII	GTNAC	9 cut(s)	1605, 1670, 1888, 2130, 2371, 2427, 2699, 3241, 3379
MfeI	CAATTG	3 cut(s)	302, 626, 2947
MflI	RGATCY	4 cut(s)	419, 746, 1459, 2921
MlsI	TGGCCA	4 cut(s)	1718, 1754, 2346, 2726
MluNI	TGGCCA	4 cut(s)	1718, 1754, 2346, 2726
MlyI	GAGTC	9 cut(s)	448, 1568, 1859, 2050, 2060, 2120, 2135, 2253, 2963
MmeI	TCCRAC	1 cut(s)	851
Mox20I	TGGCCA	4 cut(s)	1718, 1754, 2346, 2726
Mph1103I	ATGCAT	1 cut(s)	2716
MroXI	GAANNNNTTC	2 cut(s)	604, 1637
MscI	TGGCCA	4 cut(s)	1718, 1754, 2346, 2726
MslI	CAYNNNNRTG	2 cut(s)	1961, 2036
Msp20I	TGGCCA	4 cut(s)	1718, 1754, 2346, 2726
MspA1I	CMGCKG	3 cut(s)	2156, 2518, 3205
MspCI	CTTAAG	1 cut(s)	3023
MspI	CCGG	3 cut(s)	959, 2425, 3362
MspR9I	CCNGG	3 cut(s)	1720, 2313, 3167
MunI	CAATTG	3 cut(s)	302, 626, 2947
Mva1269I	GAATGC	2 cut(s)	1952, 2869
MvaI	CCWGG	3 cut(s)	1720, 2313, 3167
MvnI	CGCG	1 cut(s)	2778
MwoI	GCNNNNNNNGC	4 cut(s)	159, 483, 2784, 3263
NdeI	CATATG	3 cut(s)	1306, 2526, 3215
NlaIII	CATG	5 cut(s)	1040, 1208, 1456, 2620, 3251
NlaIV	GGNNCC	4 cut(s)	476, 795, 2788, 3211
NmeAIII	GCCGAG	1 cut(s)	2074
NmuCI	GTSAC	7 cut(s)	1670, 1888, 2130, 2371, 2699, 3241, 3379
NsbI	TGCGCA	1 cut(s)	2615
NsiI	ATGCAT	1 cut(s)	2716
NspI	RCATGY	1 cut(s)	1208
PagI	TCATGA	1 cut(s)	1036
PceI	AGGCCT	1 cut(s)	659
PciI	ACATGT	1 cut(s)	1204
PctI	GAATGC	2 cut(s)	1952, 2869
PdmI	GAANNNNTTC	2 cut(s)	604, 1637
PfeI	GAWTC	6 cut(s)	587, 605, 2215, 2521, 2564, 3233
PinAI	ACCGGT	2 cut(s)	958, 2424
PleI	GAGTC	9 cut(s)	447, 1568, 1859, 2049, 2059, 2119, 2134, 2253, 2962
PpsI	GAGTC	9 cut(s)	447, 1568, 1859, 2049, 2059, 2119, 2134, 2253, 2962
PscI	ACATGT	1 cut(s)	1204
Psp124BI	GAGCTC	1 cut(s)	3001
Psp6I	CCWGG	3 cut(s)	1718, 2311, 3165
PspEI	GGTNACC	2 cut(s)	1670, 2699
PspFI	CCCAGC	4 cut(s)	2087, 2514, 3205, 3285
PspGI	CCWGG	3 cut(s)	1718, 2311, 3165
PspN4I	GGNNCC	4 cut(s)	476, 795, 2788, 3211
PspPI	GGNCC	4 cut(s)	1533, 1618, 2634, 3313
PstNI	CAGNNNCTG	2 cut(s)	1577, 3094
PsuI	RGATCY	4 cut(s)	419, 746, 1459, 2921
PvuII	CAGCTG	3 cut(s)	2156, 2518, 3205
RsaI	GTAC	6 cut(s)	963, 1328, 1785, 2384, 2481, 2753
RsaNI	GTAC	6 cut(s)	962, 1327, 1784, 2383, 2480, 2752
RseI	CAYNNNNRTG	2 cut(s)	1961, 2036
SacI	GAGCTC	1 cut(s)	3001
Sau96I	GGNCC	4 cut(s)	1533, 1618, 2634, 3313
ScaI	AGTACT	1 cut(s)	2753
SchI	GAGTC	9 cut(s)	448, 1568, 1859, 2050, 2060, 2120, 2135, 2253, 2963
ScrFI	CCNGG	3 cut(s)	1720, 2313, 3167
SfaNI	GCATC	3 cut(s)	16, 1846, 3253
SinI	GGWCC	3 cut(s)	1533, 1618, 3313
SmiMI	CAYNNNNRTG	2 cut(s)	1961, 2036
SmlI	CTYRAG	3 cut(s)	1543, 2096, 3023
SmoI	CTYRAG	3 cut(s)	1543, 2096, 3023
SpeI	ACTAGT	1 cut(s)	1909
SseBI	AGGCCT	1 cut(s)	659
SsiI	CCGC	4 cut(s)	1168, 1370, 1846, 3266
SspI	AATATT	2 cut(s)	2546, 2673
SspMI	CTAG	8 cut(s)	192, 522, 1910, 2070, 2108, 2603, 2810, 2925
SstI	GAGCTC	1 cut(s)	3001
StuI	AGGCCT	1 cut(s)	659
StyD4I	CCNGG	3 cut(s)	1718, 2311, 3165
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	6 cut(s)	53, 345, 1783, 1822, 2239, 3103
TaiI	ACGT	1 cut(s)	1270
TaqI	TCGA	5 cut(s)	369, 590, 1939, 2421, 3395
TaqII	GACCGA	1 cut(s)	2718
TatI	WGTACW	1 cut(s)	2751
TfiI	GAWTC	6 cut(s)	587, 605, 2215, 2521, 2564, 3233
TseFI	GTSAC	7 cut(s)	1670, 1888, 2130, 2371, 2699, 3241, 3379
Tsp45I	GTSAC	7 cut(s)	1670, 1888, 2130, 2371, 2699, 3241, 3379
TspGWI	ACGGA	1 cut(s)	1222
Vha464I	CTTAAG	1 cut(s)	3023
VneI	GTGCAC	2 cut(s)	2060, 2304
VpaK11BI	GGWCC	3 cut(s)	1533, 1618, 3313
XapI	RAATTY	6 cut(s)	139, 1172, 1832, 1941, 2506, 3030
XbaI	TCTAGA	1 cut(s)	2809
XceI	RCATGY	1 cut(s)	1208
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1690, 1747
XmiI	GTMKAC	2 cut(s)	1278, 2690
XmnI	GAANNNNTTC	2 cut(s)	604, 1637
XspI	CTAG	8 cut(s)	192, 522, 1910, 2070, 2108, 2603, 2810, 2925
ZrmI	AGTACT	1 cut(s)	2753
Zsp2I	ATGCAT	1 cut(s)	2716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.