AT5G58005

cytochrome c oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009367
Physical Location & Seq
Forward (+)
23482179 .. 23483277
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58005.2

Sequence Viewer

Length: 351 bp
ATGGCTCTCGATACTTATGCGTCGTCGAACCCTAATGATGTTCATGAGGATGTTCTTCTTAAAGCTAGAGATGCTTGTTACAAGGCCAGAGATGCTTTTTACGCTTGTCTAGAAAAGGAATCTGGTAAAAAACCAACTGAAATCGCCACCGTGGGTCTTCTCTATCCTAAGGAGTGTAGCAATTCTAGAACCCAATTCGTCAACAACTGTCGGTCCTCTTGGGTGAAACATTTCGATAGAGAGTACTGTAGGAACAAGAGAGTTCAAAGGCTGTTGGATGATGGAGATGAGAGGAAAGGTCCAATGTCACTTCCTCAGCCTTACACTTTCAAGCCTTCTCCTTCCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX6B

Protein Analysis

116

Amino Acids

13.3

Weight (kDa)

8.6

Isoelectric Point (pI)

58.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX6B PF02297 21 - 92 5e-16 Cytochrome oxidase c subunit VIb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 245
AgsI TTSAA 2 cut(s) 266, 331
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
AoxI GGCC 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 213, 299
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 2 cut(s) 213, 299
AxyI CCTNAGG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 315
BccI CCATC 1 cut(s) 275
BcgI CGANNNNNNTGC 1 cut(s) 33
BfaI CTAG 3 cut(s) 66, 110, 186
BfmI CTRYAG 1 cut(s) 247
BmcAI AGTACT 1 cut(s) 245
Bme18I GGWCC 2 cut(s) 213, 299
BmgT120I GGNCC 2 cut(s) 213, 299
BmsI GCATC 2 cut(s) 61, 82
BpiI GAAGAC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 150
Bse21I CCTNAGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 55, 283
BseMII CTCAG 1 cut(s) 329
BshFI GGCC 1 cut(s) 86
BsnI GGCC 1 cut(s) 86
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 328
BspHI TCATGA 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 151, 209, 248
BstDEI CTNAG 3 cut(s) 168, 315, 348
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 2 cut(s) 55, 283
BstMWI GCNNNNNNNGC 3 cut(s) 71, 92, 101
BstSFI CTRYAG 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 149
Bsu36I CCTNAGG 1 cut(s) 168
BsuRI GGCC 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 55, 283
CciI TCATGA 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 213, 299
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 44
CviJI RGCY 6 cut(s) 5, 65, 86, 271, 319, 334
CviKI_1 RGCY 6 cut(s) 5, 65, 86, 271, 319, 334
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 3 cut(s) 168, 315, 348
Eco47I GGWCC 2 cut(s) 213, 299
Eco81I CCTNAGG 1 cut(s) 168
FaeI CATG 1 cut(s) 47
FaiI YATR 2 cut(s) 18, 45
FatI CATG 1 cut(s) 43
FokI GGATG 2 cut(s) 62, 290
FspBI CTAG 3 cut(s) 66, 110, 186
HaeIII GGCC 1 cut(s) 86
HgaI GACGC 1 cut(s) 9
Hin1II CATG 1 cut(s) 47
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 119
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 202
Hpy188III TCNNGA 4 cut(s) 8, 44, 110, 186
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 2 cut(s) 345, 351
HpyCH4III ACNGT 3 cut(s) 151, 209, 248
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 92, 101
HpyF3I CTNAG 3 cut(s) 168, 315, 348
Hsp92II CATG 1 cut(s) 47
LpnPI CCDG 2 cut(s) 100, 108
LweI GCATC 2 cut(s) 61, 82
MaeI CTAG 3 cut(s) 66, 110, 186
MaeIII GTNAC 2 cut(s) 77, 306
MboII GAAGA 2 cut(s) 47, 149
MluCI AATT 2 cut(s) 181, 194
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 4 cut(s) 40, 226, 285, 324
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 71, 92, 101
NlaIII CATG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 306
PagI TCATGA 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 119
PspPI GGNCC 2 cut(s) 213, 299
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 213, 299
ScaI AGTACT 1 cut(s) 245
SetI ASST 2 cut(s) 67, 301
SfaNI GCATC 2 cut(s) 61, 82
SfcI CTRYAG 1 cut(s) 247
SinI GGWCC 2 cut(s) 213, 299
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 2 cut(s) 181, 194
SspMI CTAG 3 cut(s) 66, 110, 186
TaaI ACNGT 3 cut(s) 151, 209, 248
TaqI TCGA 3 cut(s) 9, 26, 234
TaqII GACCGA 1 cut(s) 201
TasI AATT 2 cut(s) 181, 194
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseFI GTSAC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 213, 299
XbaI TCTAGA 2 cut(s) 109, 185
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 3 cut(s) 66, 110, 186
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.