RLG00000015725

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009367
Physical Location & Seq
Forward (+)
1043410 .. 1044421
1012 bp
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UTR
Exon/CDS
Intron
RLM00000015725

Sequence Viewer

Length: 306 bp
ATGGCCAATGAAGCTTTAACAGCACGAAACCCAGATGGGGTACACACCGATGTGCTCTCTAGTGCAAGACAAGCTTGCTATAAGGCACGAGACGCATTCTATGCTTGTTTGGAGAAAGAATCAGATAAGAAGCAGACTGAAATTGCGTCCAAGGGTCTGTTATACCCAGCACAGTGCAAACCCGCCAGGGATCAGTACGTCAATAACTGCCGTGCTTCTTGGGTGAAGCATTTTGATGCGCTGCACTGCAAGAACAGGAGTTTGAAGAGGCTTTTGGATGATAAAGAATCGAGGAGAGGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX6B

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

9.2

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX6B PF02297 20 - 86 2.3e-15 Cytochrome oxidase c subunit VIb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 42, 197
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AleI CACNNNNGTG 1 cut(s) 50
AluBI AGCT 2 cut(s) 14, 74
AluI AGCT 2 cut(s) 14, 74
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 198
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 241
AspLEI GCGC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 235
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 228
BccI CCATC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 150, 186
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 150, 186
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 228
BseYI CCCAGC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 227
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 150, 186
BssMI GATC 1 cut(s) 190
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 76
BstF5I GGATG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 71, 92, 101
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 179, 244
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 241
CseI GACGC 2 cut(s) 101, 135
Csp6I GTAC 2 cut(s) 41, 196
CviJI RGCY 4 cut(s) 5, 14, 74, 271
CviKI_1 RGCY 4 cut(s) 5, 14, 74, 271
CviQI GTAC 2 cut(s) 41, 196
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 84
FaiI YATR 3 cut(s) 81, 102, 163
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 242
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 242
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 242
GsaI CCCAGC 1 cut(s) 170
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 2 cut(s) 101, 135
HhaI GCGC 1 cut(s) 241
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HindIII AAGCTT 2 cut(s) 12, 72
HinfI GANTC 2 cut(s) 119, 287
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 65, 177, 244, 249
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 71, 92, 101
HpySE526I ACGT 1 cut(s) 198
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 45, 172, 180, 199, 241
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 198
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 57
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 261, 285, 290
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 17, 304
MslI CAYNNNNRTG 3 cut(s) 48, 50, 234
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 187
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 71, 92, 101
NdeII GATC 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 50
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 119, 287
PkrI GCNGC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 166
PspGI CCWGG 1 cut(s) 185
RsaI GTAC 2 cut(s) 42, 197
RsaNI GTAC 2 cut(s) 41, 196
RseI CAYNNNNRTG 3 cut(s) 48, 50, 234
SaqAI TTAA 2 cut(s) 17, 304
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 57
SetI ASST 3 cut(s) 16, 76, 201
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 3 cut(s) 48, 50, 234
Sse9I AATT 1 cut(s) 141
SsiI CCGC 1 cut(s) 183
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 174
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 290
TasI AATT 1 cut(s) 141
TfiI GAWTC 2 cut(s) 119, 287
Tru1I TTAA 2 cut(s) 17, 304
Tru9I TTAA 2 cut(s) 17, 304
TscAI CASTG 2 cut(s) 179, 251
TseI GCWGC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 2 cut(s) 179, 251
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.