Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001748.1

Orthogroup ID

OG0009367

Physical Location & Seq

Genomic Coordinates Reverse (-)

27342 .. 28536

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001748.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgcttctcaagttccctcccttggcaattcgcgctaatcatactcttgcagaagcaaaaggttctctctttagcgaagccatggccaatgaagctttaccagcacgaaacccagatggggttcactccgatgtgctctctagtgcaagacaagcttgctataaggcacgagacgcattctatgcttgtttggagaaagaatcagataagaaacagactgaaattgcgtctaagggtctgttatacccagcacagtgcaaacccgccagggatcagttcgtcaataactgccgtgcttcttgggtgaagcattttgatgcgctgcactgcaagaacagaagtttgaagaggcttttggatgataaagaatcgaggagaggggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

COX6B

Protein Analysis

128

Amino Acids

14.35

Weight (kDa)

9.32

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58005 AT5G58005
fragaria_vesca	FvH4_1g01100
malus_domestica	MD02G1009100.v1.1 MD15G1154500.v1.1
prunus_persica	Prupe.7G260900_v2.0.a1 Prupe.7G260900_v2.0.a1
pyrus_communis	pycom02g00810 pycom15g13810
rosa_chinensis	RchiOBHm_Chr2g0085901
rosa_laevigata	RLG00000015725
rosa_multiflora	Rmu_co8462621.1_g000001 Rmu_sc0001748.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154950
rosa_rugosa	Rorug01G0464300 Rorug01G0464300 Rorug01G0464300
rosa_samantha	Rh2AG013100 Rh2BG013800 Rh2CG014300 Rh2DG015600
rosa_wichuraiana	Rw2G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	33
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	22, 118
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	266
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	2 cut(s)	95, 155
AluI	AGCT	2 cut(s)	95, 155
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	322
AspLEI	GCGC	2 cut(s)	35, 322
AsuHPI	GGTGA	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	86
BauI	CACGAG	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	141
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	307
BsaJI	CCNNGG	3 cut(s)	21, 81, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 118
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	21, 81, 267
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	2 cut(s)	22, 118
BseXI	GCAGC	1 cut(s)	309
BseYI	CCCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	22, 118
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	271
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	33
BspPI	GGATC	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	21, 81, 267
BssMI	GATC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	21, 81
Bst2BI	CACGAG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	35, 322
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 92, 101, 152, 173, 182
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	260, 325
Cac8I	GCNNGC	1 cut(s)	157
CfoI	GCGC	2 cut(s)	35, 322
CseI	GACGC	2 cut(s)	182, 216
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	5 cut(s)	80, 86, 95, 155, 352
CviKI_1	RGCY	5 cut(s)	80, 86, 95, 155, 352
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	21, 81
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	21, 81
ErhI	CCWWGG	2 cut(s)	21, 81
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	1 cut(s)	85
FaiI	YATR	5 cut(s)	42, 83, 162, 183, 244
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FatI	CATG	1 cut(s)	81
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	323
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	2 cut(s)	34, 321
GluI	GCNGC	1 cut(s)	323
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	86
HgaI	GACGC	2 cut(s)	182, 216
HhaI	GCGC	2 cut(s)	35, 322
Hin1II	CATG	1 cut(s)	85
Hin6I	GCGC	2 cut(s)	33, 320
HinP1I	GCGC	2 cut(s)	33, 320
HindIII	AAGCTT	2 cut(s)	93, 153
HinfI	GANTC	2 cut(s)	200, 368
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	130, 205
Hpy8I	GTNNAC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	50, 146, 258, 325, 330
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 92, 101, 152, 173, 182
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	85
HspAI	GCGC	2 cut(s)	33, 320
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	114, 126, 253, 261, 280
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	141
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	2 cut(s)	27, 222
MluNI	TGGCCA	1 cut(s)	86
MnlI	CCTC	4 cut(s)	27, 342, 366, 371
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	1 cut(s)	385
MslI	CAYNNNNRTG	2 cut(s)	129, 315
Msp20I	TGGCCA	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	6 cut(s)	32, 92, 101, 152, 173, 182
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	85
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	200, 368
PkrI	GCNGC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	266
RseI	CAYNNNNRTG	2 cut(s)	129, 315
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	3 cut(s)	64, 97, 157
SfaNI	GCATC	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	129, 315
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	27, 222
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	2 cut(s)	21, 81
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	371
TasI	AATT	2 cut(s)	27, 222
TfiI	GAWTC	2 cut(s)	200, 368
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TscAI	CASTG	2 cut(s)	260, 332
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	2 cut(s)	260, 332
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.