Prupe.7G260900_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009367
Physical Location & Seq
Reverse (-)
21689622 .. 21691899
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G260900.1

Sequence Viewer

Length: 351 bp
ATGGCCACGGAAGCTTACGCGGCACGAAGCCCGGATGAGATTCACACTGACGTACTCTCTAGTTCCAGACAAGCTTGCTATAAGGCTCGAGACGCTTTCTATGCGTGTTTGGAGAAAGAATCGGACAAAAAACAGACTGAAATCGCTTCCAAGGGGCTGTTGTACCCAGCTGAGTGCAAAGCTTCGAGGGAGGAGTTTGTCAATCACTGCCGTGCTTCTTGGGTTAAGCATTTTGATGCTCTCTACTGCAAGAACAAGAGTCTGAAGAGGCTTTTGGATGATAAAGATTCGAGGAGAGGTCCGTTGTCACTTCCACAGCCTTACACTTTCAAGCCTACCACAAGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX6B

Protein Analysis

117

Amino Acids

13.2

Weight (kDa)

8.8

Isoelectric Point (pI)

76.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 2 cut(s) 54, 164
AgsI TTSAA 1 cut(s) 331
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 4 cut(s) 14, 74, 170, 182
AluI AGCT 4 cut(s) 14, 74, 170, 182
Alw26I GTCTC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 87
AvaII GGWCC 1 cut(s) 299
BalI TGGCCA 1 cut(s) 5
BceAI ACGGC 1 cut(s) 195
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 299
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 6, 150
BseDI CCNNGG 2 cut(s) 6, 150
BseGI GGATG 2 cut(s) 40, 283
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 2 cut(s) 206, 307
BseYI CCCAGC 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 87
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 6, 150
BssT1I CCWWGG 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 40, 283
BstFNI CGCG 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 84
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 101
BstSCI CCNGG 1 cut(s) 30
BstUI CGCG 1 cut(s) 20
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 40, 283
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 45, 205
Cac8I GCNNGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 299
CseI GACGC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 53, 163
CviQI GTAC 2 cut(s) 53, 163
DdeI CTNAG 1 cut(s) 171
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 84
FaiI YATR 2 cut(s) 81, 102
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 2 cut(s) 47, 290
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 21
GsaI CCCAGC 1 cut(s) 170
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 101
HindIII AAGCTT 3 cut(s) 12, 72, 180
HinfI GANTC 4 cut(s) 40, 119, 259, 287
HpaII CCGG 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 124, 264
Hpy188III TCNNGA 2 cut(s) 66, 89
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 177, 249
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 101
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 51
LpnPI CCDG 3 cut(s) 45, 79, 180
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 306
MboII GAAGA 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 5 cut(s) 180, 184, 261, 285, 290
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 225, 349
MslI CAYNNNNRTG 2 cut(s) 210, 234
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 101
NciI CCSGG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 306
OliI CACNNNNGTG 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 87
PfeI GAWTC 3 cut(s) 40, 119, 287
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 54, 164
RsaNI GTAC 2 cut(s) 53, 163
RseI CAYNNNNRTG 2 cut(s) 210, 234
SaqAI TTAA 2 cut(s) 225, 349
SatI GCNGC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 32
SetI ASST 6 cut(s) 16, 54, 76, 172, 184, 301
SfaNI GCATC 1 cut(s) 226
Sfr274I CTCGAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 87
SmiMI CAYNNNNRTG 2 cut(s) 210, 234
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 88, 185, 290
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 3 cut(s) 40, 119, 287
Tru1I TTAA 2 cut(s) 225, 349
Tru9I TTAA 2 cut(s) 225, 349
TscAI CASTG 2 cut(s) 52, 212
TseFI GTSAC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 306
TspGWI ACGGA 2 cut(s) 23, 291
TspRI CASTG 2 cut(s) 52, 212
VpaK11BI GGWCC 1 cut(s) 299
XhoI CTCGAG 1 cut(s) 87
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.