Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009367

Physical Location & Seq

Genomic Coordinates Forward (+)

480396 .. 481550

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTGAATCATGGTCCTCTCCGACTAACAGCAACCGAATCAAAGATTCAGAGCTCTCTCTCTTCTGATTTCGAATCAATGGCCAAGGAAGCTTACGCCGCACGAAACCCAGATGAGGTTCACACAGACGTGCTCTCCAATGCCAGACAAGCTTGCTATAAGGCTCGGGACGCTTTCTATGCGTGTGTGGAGAAAGAATCGGACAAGAAGCAGACCGAAATCGCATCGAAGGGCCTGTTGTACGCAGCAGAATGCAAAGCTTCGAGGGAGGAGTTTGTCAAACACTGCCGTACTTCTTGGGTGAAGCATTTTGATGCGCTCTACTGCAAGAACAAGAGTCTGAAGAGGCTTTTGGATGATAAGGATTCGAGGAGAGGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

COX6B

Protein Analysis

128

Amino Acids

14.44

Weight (kDa)

8.79

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58005 AT5G58005
fragaria_vesca	FvH4_1g01100
malus_domestica	MD02G1009100.v1.1 MD15G1154500.v1.1
prunus_persica	Prupe.7G260900_v2.0.a1 Prupe.7G260900_v2.0.a1
pyrus_communis	pycom02g00810 pycom15g13810
rosa_chinensis	RchiOBHm_Chr2g0085901
rosa_laevigata	RLG00000015725
rosa_multiflora	Rmu_co8462621.1_g000001 Rmu_sc0001748.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154950
rosa_rugosa	Rorug01G0464300 Rorug01G0464300 Rorug01G0464300
rosa_samantha	Rh2AG013100 Rh2BG013800 Rh2CG014300 Rh2DG015600
rosa_wichuraiana	Rw2G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	242, 292
AfiI	CCNNNNNNNGG	1 cut(s)	115
AjiI	CACGTC	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	54, 92, 152, 260
AluI	AGCT	4 cut(s)	54, 92, 152, 260
Alw21I	GWGCWC	2 cut(s)	56, 135
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	2 cut(s)	81, 232
ApeKI	GCWGC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	2 cut(s)	14, 232
AsuHPI	GGTGA	1 cut(s)	313
AsuII	TTCGAA	1 cut(s)	72
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	56, 135
BbvI	GCAGC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	273
BisI	GCNGC	2 cut(s)	99, 246
BlsI	GCNGC	2 cut(s)	100, 247
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	14, 232
BmsI	GCATC	2 cut(s)	233, 304
Bpu14I	TTCGAA	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	257
BshFI	GGCC	2 cut(s)	83, 234
BsiHKAI	GWGCWC	2 cut(s)	56, 135
BsiHKCI	CYCGRG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	83, 234
BsoBI	CYCGRG	1 cut(s)	165
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	56, 135
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	2 cut(s)	83, 234
BspT104I	TTCGAA	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	84
Bst6I	CTCTTC	2 cut(s)	67, 338
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 98, 149, 170, 179
BstV1I	GCAGC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	83, 234
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	154
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	14, 232
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	241, 291
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	8 cut(s)	54, 83, 92, 152, 164, 234, 260, 349
CviKI_1	RGCY	8 cut(s)	54, 83, 92, 152, 164, 234, 260, 349
CviQI	GTAC	2 cut(s)	241, 291
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	67, 338
EarI	CTCTTC	2 cut(s)	67, 338
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	14
FaiI	YATR	4 cut(s)	12, 159, 180, 382
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	99, 246
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	99, 246
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	2 cut(s)	99, 246
HaeIII	GGCC	2 cut(s)	83, 234
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HindIII	AAGCTT	3 cut(s)	90, 150, 258
HinfI	GANTC	7 cut(s)	7, 38, 46, 74, 197, 337, 365
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	5 cut(s)	23, 51, 67, 202, 342
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	255, 327
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 98, 149, 170, 179
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	1 cut(s)	317
LpnPI	CCDG	3 cut(s)	123, 157, 248
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	2 cut(s)	233, 304
MaeII	ACGT	1 cut(s)	129
MboII	GAAGA	2 cut(s)	54, 355
MhlI	GDGCHC	2 cut(s)	56, 135
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	7 cut(s)	27, 109, 258, 262, 339, 363, 368
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MslI	CAYNNNNRTG	2 cut(s)	128, 312
Msp20I	TGGCCA	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	257
MwoI	GCNNNNNNNGC	5 cut(s)	89, 98, 149, 170, 179
NlaIII	CATG	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	72
OliI	CACNNNNGTG	1 cut(s)	128
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	6 cut(s)	7, 38, 46, 74, 197, 365
PkrI	GCNGC	2 cut(s)	100, 247
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	56
PspPI	GGNCC	2 cut(s)	14, 232
RsaI	GTAC	2 cut(s)	242, 292
RsaNI	GTAC	2 cut(s)	241, 291
RseI	CAYNNNNRTG	2 cut(s)	128, 312
SacI	GAGCTC	1 cut(s)	56
SatI	GCNGC	2 cut(s)	99, 246
Sau96I	GGNCC	2 cut(s)	14, 232
SchI	GAGTC	1 cut(s)	346
SduI	GDGCHC	2 cut(s)	56, 135
SetI	ASST	6 cut(s)	56, 94, 120, 132, 154, 262
SfaNI	GCATC	2 cut(s)	233, 304
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	128, 312
SsiI	CCGC	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	84
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	4 cut(s)	72, 227, 263, 368
TaqII	GACCGA	1 cut(s)	230
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	6 cut(s)	7, 38, 46, 74, 197, 365
TscAI	CASTG	1 cut(s)	290
TseI	GCWGC	1 cut(s)	245
TspRI	CASTG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.