Rh2BG013800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009367
Physical Location & Seq
Forward (+)
1040926 .. 1042993
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG013800.1

Sequence Viewer

Length: 237 bp
ATGGGTTCCGATCAGGCACGAGACGCATTCTATGCTTGTTTGGAGAAAGAATCAGATAAGAAACAGACTGAAATTGCGTCCAAGGGTCTGTTATACCCAGCACAGTGCAAACCCGCCAGGGATCAGTTCGTCAATAACTGCCGTGCTTCTTGGGTGAAGCATTTTGATGCGCTGCACTGCAAGAACAGAAGTTTGAAGAGGCTTTTGGATGATAAAGAATCGAGGAGAGGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX6B

Protein Analysis

78

Amino Acids

8.97

Weight (kDa)

9.21

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX6B PF02297 5 - 63 3e-11 Cytochrome oxidase c subunit VIb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 129
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 166
BauI CACGAG 1 cut(s) 18
BbvI GCAGC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 15
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 81, 117
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 81, 117
BseGI GGATG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 159
BseYI CCCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmI GAATGC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 10, 121
BspACI CCGC 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 81, 117
BssMI GATC 2 cut(s) 10, 121
BssSI CACGAG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 32
BstF5I GGATG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 13, 124
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 2 cut(s) 10, 121
BstMWI GCNNNNNNNGC 2 cut(s) 23, 32
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 110, 175
CfoI GCGC 1 cut(s) 172
CseI GACGC 2 cut(s) 32, 66
CviJI RGCY 1 cut(s) 202
CviKI_1 RGCY 1 cut(s) 202
DpnI GATC 2 cut(s) 12, 123
DpnII GATC 2 cut(s) 10, 121
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 15
FaiI YATR 2 cut(s) 33, 94
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 173
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 173
GsaI CCCAGC 1 cut(s) 101
HgaI GACGC 2 cut(s) 32, 66
HhaI GCGC 1 cut(s) 172
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 2 cut(s) 50, 218
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 10, 55
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 108, 175, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 32
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 2 cut(s) 10, 121
LpnPI CCDG 3 cut(s) 103, 111, 130
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 1 cut(s) 157
MalI GATC 2 cut(s) 12, 123
MboI GATC 2 cut(s) 10, 121
MboII GAAGA 1 cut(s) 208
MluCI AATT 1 cut(s) 72
MnlI CCTC 3 cut(s) 192, 216, 221
MseI TTAA 1 cut(s) 235
MslI CAYNNNNRTG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 23, 32
NdeII GATC 2 cut(s) 10, 121
NlaIV GGNNCC 1 cut(s) 7
PctI GAATGC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 50, 218
PkrI GCNGC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 235
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 2 cut(s) 10, 121
ScrFI CCNGG 1 cut(s) 118
SfaNI GCATC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 1 cut(s) 72
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 221
TasI AATT 1 cut(s) 72
TfiI GAWTC 2 cut(s) 50, 218
Tru1I TTAA 1 cut(s) 235
Tru9I TTAA 1 cut(s) 235
TscAI CASTG 2 cut(s) 110, 182
TseI GCWGC 1 cut(s) 172
TspRI CASTG 2 cut(s) 110, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.