MD15G1154500.v1.1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009367
Physical Location & Seq
Forward (+)
11454740 .. 11456168
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1154500.v1.1.491

Sequence Viewer

Length: 306 bp
ATGGCCACGGAAGCTTACGCCGCACGAAACCCAGCAGAGGTTCACACGGACGTCCTCTCCAATGCCAGACAAGCTTGCTACAAGGCTCGGGACGCTTTCTATGCGTGTGTGGAGAAAGAATCGGACAAGAAGCAGACCGAAATCGCGTCGAAGGGCCTGTTGTACCCAGCAGAATGCAAAGCTTCGAGGGAGGAGTTTGTCAAACACTGCCGTACTTCTTGGGTGAAGCATTTTGATGCGCTATACTGCAAGAACAAGAGTCTGAAGAGGCTTTTGGATGATAAAGATTCGAGGAAAGGAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX6B

Protein Analysis

102

Amino Acids

11.53

Weight (kDa)

8.98

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX6B PF02297 20 - 89 7.5e-15 Cytochrome oxidase c subunit VIb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 54
AccII CGCG 1 cut(s) 146
AciI CCGC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 164, 214
AfiI CCNNNNNNNGG 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 3 cut(s) 14, 74, 182
AluI AGCT 3 cut(s) 14, 74, 182
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 2 cut(s) 3, 154
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 87
BalI TGGCCA 1 cut(s) 5
BceAI ACGGC 1 cut(s) 195
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 206
BseYI CCCAGC 2 cut(s) 31, 166
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 2 cut(s) 5, 156
BsiHKCI CYCGRG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 2 cut(s) 5, 156
BsoBI CYCGRG 1 cut(s) 87
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 5, 156
BspFNI CGCG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 76
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 241
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 71, 92, 101
BstUI CGCG 1 cut(s) 146
BsuRI GGCC 2 cut(s) 5, 156
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 2 cut(s) 101, 135
Csp6I GTAC 2 cut(s) 163, 213
CviJI RGCY 7 cut(s) 5, 14, 74, 86, 156, 182, 271
CviKI_1 RGCY 7 cut(s) 5, 14, 74, 86, 156, 182, 271
CviQI GTAC 2 cut(s) 163, 213
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 154
FaiI YATR 3 cut(s) 102, 244, 304
FaqI GGGAC 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 21
GlaI GCGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 21
GsaI CCCAGC 2 cut(s) 35, 170
HaeIII GGCC 2 cut(s) 5, 156
HgaI GACGC 2 cut(s) 101, 135
HhaI GCGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 51
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HindIII AAGCTT 3 cut(s) 12, 72, 180
HinfI GANTC 3 cut(s) 119, 259, 287
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 124, 264
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 177, 249
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 71, 92, 101
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 51
HspAI GCGC 1 cut(s) 239
LpnPI CCDG 4 cut(s) 45, 79, 170, 180
LweI GCATC 1 cut(s) 226
MaeII ACGT 1 cut(s) 51
MboII GAAGA 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 6 cut(s) 31, 65, 180, 184, 261, 285
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 234
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 179
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 71, 92, 101
PctI GAATGC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 119, 287
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PspFI CCCAGC 2 cut(s) 31, 166
PspPI GGNCC 1 cut(s) 154
RsaI GTAC 2 cut(s) 164, 214
RsaNI GTAC 2 cut(s) 163, 213
RseI CAYNNNNRTG 1 cut(s) 234
SatI GCNGC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 268
SetI ASST 5 cut(s) 16, 42, 54, 76, 184
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 234
SsiI CCGC 1 cut(s) 21
TaiI ACGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 149, 185, 290
TaqII GACCGA 1 cut(s) 152
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 2 cut(s) 119, 287
TscAI CASTG 1 cut(s) 212
TspGWI ACGGA 2 cut(s) 23, 62
TspRI CASTG 1 cut(s) 212
ZraI GACGTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.