Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010148

Physical Location & Seq

Genomic Coordinates Reverse (-)

23554386 .. 23556001

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCGATGGAGATCGGAGAAGATGAATGGAAGGTTTGCTGTGGAAGCTCCGAATTCGCGAAGCAGATGTCTACGTCTGGACCGTTAACTTCTCAAGAAGCAATATATACTGCAAGAGACATCTGGTTCAACCAAGTTAATGTGACAGATTGGCTTGAAGCTTTCTCTGCTCATCCTCAGATTGGGAATACTCCTTCACCTTCTATCAACTCCGATTTTGCTCGTCGGAGCGTATCAGAACAGTCAACCGCCTTTGCCACAACTTCTGCTTCTGCTTTACAGGAGCTTGCCGAATGGAATGTACTTTACAAAAAGAAGTTTGGCTTTATCTTCATTATTTGCGCTTCTGGCAGGACTCACGCTGAGATGCTCCATGCGTTAAAGGAAAGGTATGAAAATAGGCCAATAGTGGAGCTTGAGATTGCTGCTATGGAACAAATGAAAATAACAGAGCTACGAATGGCAAAGCTGTTCTCCGATAAGGCTAAAGTTATATCAGAAACTGACAGCTCTAGCTCTCCTGTTTCAACAAAACCTCAAGATCGTCTGAGAATCATTGGAGGGCATTTGAATGTTGCAGCTGAAGCAAAAGCTCCCAAGAGAAGTAGGCCACCGATCACGACTCATGTCTTAGACGTCTCACGTGGTGCTCCAGCTGCAGGTGTTGAAGTGCACTTAGAAGTGTGGAGTGGTACTACCGGTCCTTCCTTTGTTCATGGAGGTGGTGGGGTCTGGTCCAGTGTGGGCACATCAGCTACTGATAGAGATGGGCGCAGTGGGCCACTGATGGATTTGGTTGACGCTTTGAATCCAGGGACATATAGGATTAGCTTCGACACTGCAAAGTATTCCCCAGGCTGCTTCTTTCCCTATGTTTCCATTGTATTTCAGGTTACAGAATCACAGAAATGGGAGCATTTCCATGTCCCACTGTTGCTTGCACCTTTTTCTTTCTCCACATACCGTGGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0001558 GO:0001560 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009605 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009898 GO:0009987 GO:0009991 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016787 GO:0016810 GO:0016812 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0018130 GO:0019428 GO:0019897 GO:0019898 GO:0022607 GO:0023052 GO:0031234 GO:0031668 GO:0032870 GO:0033971 GO:0033993 GO:0034641 GO:0040008 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046483 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0051997 GO:0055086 GO:0065003 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0098552 GO:0098562 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

OHCU_decarbox Transthyretin

Protein Analysis

324

Amino Acids

35.56

Weight (kDa)

6.16

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OHCU_decarbox	PF09349	12 - 154	1.1e-28	OHCU decarboxylase
Transthyretin	PF00576	206 - 323	1.2e-30	HIUase/Transthyretin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58220 AT5G58220 AT5G58220
fragaria_vesca	FvH4_7g08020 FvH4_7g08020 FvH4_7g08020
malus_domestica	MD00G1098400.v1.1
prunus_persica	Prupe.2G109200_v2.0.a1
pyrus_communis	pycom07g06690
rosa_chinensis	RchiOBHm_Chr1g0341291
rosa_laevigata	RLG00000029080
rosa_multiflora	Rmu_sc0004092.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311920
rosa_rugosa	Rorug01G0157900.1 Rorug01G0158000.1 Rorug01G0158100.1
rosa_samantha	Rh1AG172500 Rh1BG140600 Rh1CG160600 Rh1DG172800
rosa_wichuraiana	Rw1G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	650
AatII	GACGTC	1 cut(s)	639
Acc36I	ACCTGC	1 cut(s)	650
AccI	GTMKAC	1 cut(s)	71
AccII	CGCG	1 cut(s)	59
AciI	CCGC	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	603
AcvI	CACGTG	1 cut(s)	644
AcyI	GRCGYC	1 cut(s)	636
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	2 cut(s)	303, 694
AfiI	CCNNNNNNNGG	2 cut(s)	182, 659
AgeI	ACCGGT	1 cut(s)	698
AgsI	TTSAA	6 cut(s)	130, 158, 528, 571, 668, 808
AjnI	CCWGG	2 cut(s)	811, 853
Alw21I	GWGCWC	2 cut(s)	652, 675
Alw26I	GTCTC	2 cut(s)	111, 643
Alw44I	GTGCAC	1 cut(s)	671
AlwNI	CAGNNNCTG	2 cut(s)	503, 758
AoxI	GGCC	3 cut(s)	401, 608, 779
ApaLI	GTGCAC	1 cut(s)	671
ApeKI	GCWGC	4 cut(s)	425, 578, 656, 858
ApoI	RAATTY	1 cut(s)	53
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AsiGI	ACCGGT	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	344, 774
AspS9I	GGNCC	4 cut(s)	80, 701, 735, 779
AsuHPI	GGTGA	1 cut(s)	189
AvaII	GGWCC	3 cut(s)	80, 701, 735
BaeGI	GKGCMC	2 cut(s)	675, 749
BbrPI	CACGTG	1 cut(s)	644
Bbv12I	GWGCWC	2 cut(s)	652, 675
BbvI	GCAGC	4 cut(s)	412, 590, 643, 845
BccI	CCATC	2 cut(s)	761, 781
BciT130I	CCWGG	2 cut(s)	813, 855
BcoDI	GTCTC	2 cut(s)	111, 643
BfaI	CTAG	2 cut(s)	513, 973
BfmI	CTRYAG	1 cut(s)	657
BfuAI	ACCTGC	1 cut(s)	650
BisI	GCNGC	4 cut(s)	426, 579, 657, 859
BlsI	GCNGC	4 cut(s)	427, 580, 658, 860
Bme1390I	CCNGG	2 cut(s)	813, 855
Bme18I	GGWCC	3 cut(s)	80, 701, 735
BmgT120I	GGNCC	4 cut(s)	80, 701, 735, 779
BmrFI	CCNGG	2 cut(s)	813, 855
BmsI	GCATC	1 cut(s)	357
BoxI	GACNNNNGTC	1 cut(s)	626
BpmI	CTGGAG	1 cut(s)	636
BpuEI	CTTGAG	3 cut(s)	78, 437, 522
BsaAI	YACGTR	1 cut(s)	644
BsaBI	GATNNNNATC	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	812, 853, 964
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 659
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	1 cut(s)	738
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	813, 855
BseDI	CCNNGG	3 cut(s)	812, 853, 964
BseGI	GGATG	1 cut(s)	172
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	182, 659
BseMII	CTCAG	3 cut(s)	191, 354, 539
BseNI	ACTGG	1 cut(s)	738
BseSI	GKGCMC	2 cut(s)	675, 749
BseXI	GCAGC	4 cut(s)	412, 590, 643, 845
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	3 cut(s)	403, 610, 781
BshTI	ACCGGT	1 cut(s)	698
BsiHKAI	GWGCWC	2 cut(s)	652, 675
BsiSI	CCGG	1 cut(s)	699
BslFI	GGGAC	2 cut(s)	829, 911
BslI	CCNNNNNNNGG	2 cut(s)	182, 659
BsmAI	GTCTC	2 cut(s)	111, 643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	2 cut(s)	829, 911
BsnI	GGCC	3 cut(s)	403, 610, 781
Bsp1286I	GDGCHC	3 cut(s)	652, 675, 749
Bsp143I	GATC	3 cut(s)	12, 541, 615
Bsp68I	TCGCGA	1 cut(s)	59
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	3 cut(s)	403, 610, 781
BspCNI	CTCAG	3 cut(s)	190, 355, 540
BspFNI	CGCG	1 cut(s)	59
BspMAI	CTGCAG	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	650
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	738
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	3 cut(s)	812, 853, 964
BssMI	GATC	3 cut(s)	12, 541, 615
BssNI	GRCGYC	1 cut(s)	636
Bst2UI	CCWGG	2 cut(s)	813, 855
Bst4CI	ACNGT	4 cut(s)	84, 243, 933, 965
BstACI	GRCGYC	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	288, 939
BstDEI	CTNAG	5 cut(s)	177, 363, 548, 631, 676
BstDSI	CCRYGG	1 cut(s)	964
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	344, 774
BstKTI	GATC	3 cut(s)	15, 544, 618
BstMAI	GTCTC	2 cut(s)	111, 643
BstMBI	GATC	3 cut(s)	12, 541, 615
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 167, 348, 584, 656, 778
BstNI	CCWGG	2 cut(s)	813, 855
BstPAI	GACNNNNGTC	1 cut(s)	626
BstSCI	CCNGG	2 cut(s)	811, 853
BstSFI	CTRYAG	1 cut(s)	657
BstSLI	GKGCMC	2 cut(s)	675, 749
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	4 cut(s)	412, 590, 643, 845
BsuRI	GGCC	3 cut(s)	403, 610, 781
BtgI	CCRYGG	1 cut(s)	964
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	172
BtsI	GCAGTG	2 cut(s)	781, 837
BtsIMutI	CAGTG	5 cut(s)	745, 781, 782, 837, 929
BtuMI	TCGCGA	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	650
Cac8I	GCNNGC	2 cut(s)	288, 939
CaiI	CAGNNNCTG	2 cut(s)	503, 758
CfoI	GCGC	2 cut(s)	344, 774
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	4 cut(s)	80, 701, 735, 779
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	2 cut(s)	302, 693
CspAI	ACCGGT	1 cut(s)	698
CviAII	CATG	4 cut(s)	374, 626, 716, 923
CviQI	GTAC	2 cut(s)	302, 693
DdeI	CTNAG	5 cut(s)	177, 363, 548, 631, 676
DpnI	GATC	3 cut(s)	14, 543, 617
DpnII	GATC	3 cut(s)	12, 541, 615
DraIII	CACNNNGTG	1 cut(s)	647
Eco47I	GGWCC	3 cut(s)	80, 701, 735
Eco57I	CTGAAG	1 cut(s)	603
Eco72I	CACGTG	1 cut(s)	644
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	811, 853
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	4 cut(s)	377, 629, 719, 926
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	2 cut(s)	829, 911
FatI	CATG	4 cut(s)	373, 625, 715, 922
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	4 cut(s)	426, 579, 657, 859
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	426, 579, 657, 859
FspBI	CTAG	2 cut(s)	513, 973
GlaI	GCGC	2 cut(s)	343, 773
GluI	GCNGC	4 cut(s)	426, 579, 657, 859
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	403, 610, 781
HapII	CCGG	1 cut(s)	699
HgaI	GACGC	1 cut(s)	809
HhaI	GCGC	2 cut(s)	344, 774
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	4 cut(s)	377, 629, 719, 926
Hin6I	GCGC	2 cut(s)	342, 772
HinP1I	GCGC	2 cut(s)	342, 772
HincII	GTYRAC	3 cut(s)	87, 246, 799
HindII	GTYRAC	3 cut(s)	87, 246, 799
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	5 cut(s)	355, 552, 622, 808, 899
HpaI	GTTAAC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	699
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	5 cut(s)	72, 87, 246, 673, 799
Hpy188I	TCNGA	9 cut(s)	17, 52, 180, 214, 228, 238, 478, 499, 549
Hpy188III	TCNNGA	5 cut(s)	58, 78, 95, 539, 619
Hpy8I	GTNNAC	5 cut(s)	72, 87, 246, 673, 799
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	4 cut(s)	25, 204, 210, 714
HpyCH4III	ACNGT	4 cut(s)	84, 243, 933, 965
HpyCH4IV	ACGT	3 cut(s)	74, 636, 643
HpyCH4V	TGCA	6 cut(s)	113, 578, 659, 673, 842, 941
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 167, 348, 584, 656, 778
HpyF3I	CTNAG	5 cut(s)	177, 363, 548, 631, 676
HpySE526I	ACGT	3 cut(s)	74, 636, 643
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	4 cut(s)	377, 629, 719, 926
HspAI	GCGC	2 cut(s)	342, 772
KspAI	GTTAAC	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	12, 541, 615
LmnI	GCTCC	9 cut(s)	53, 228, 283, 375, 412, 598, 655, 913, 969
Lsp1109I	GCAGC	4 cut(s)	412, 590, 643, 845
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	2 cut(s)	513, 973
MaeII	ACGT	3 cut(s)	74, 636, 643
MaeIII	GTNAC	2 cut(s)	142, 892
MalI	GATC	3 cut(s)	14, 543, 617
MboI	GATC	3 cut(s)	12, 541, 615
MboII	GAAGA	2 cut(s)	32, 322
MhlI	GDGCHC	3 cut(s)	652, 675, 749
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	349, 616
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	4 cut(s)	186, 546, 554, 713
MseI	TTAA	3 cut(s)	86, 138, 380
MslI	CAYNNNNRTG	4 cut(s)	570, 720, 907, 921
MspA1I	CMGCKG	2 cut(s)	581, 656
MspI	CCGG	1 cut(s)	699
MspR9I	CCNGG	2 cut(s)	813, 855
MvaI	CCWGG	2 cut(s)	813, 855
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	6 cut(s)	45, 167, 348, 584, 656, 778
NdeII	GATC	3 cut(s)	12, 541, 615
NlaIII	CATG	4 cut(s)	377, 629, 719, 926
NmuCI	GTSAC	1 cut(s)	142
NruI	TCGCGA	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	552, 808, 899
PinAI	ACCGGT	1 cut(s)	698
PkrI	GCNGC	4 cut(s)	427, 580, 658, 860
PleI	GAGTC	2 cut(s)	349, 616
PmaCI	CACGTG	1 cut(s)	644
PmlI	CACGTG	1 cut(s)	644
PpsI	GAGTC	2 cut(s)	349, 616
Ppu21I	YACGTR	1 cut(s)	644
PshAI	GACNNNNGTC	1 cut(s)	626
Psp6I	CCWGG	2 cut(s)	811, 853
PspCI	CACGTG	1 cut(s)	644
PspGI	CCWGG	2 cut(s)	811, 853
PspPI	GGNCC	4 cut(s)	80, 701, 735, 779
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	2 cut(s)	503, 758
PvuII	CAGCTG	2 cut(s)	581, 656
RruI	TCGCGA	1 cut(s)	59
RsaI	GTAC	2 cut(s)	303, 694
RsaNI	GTAC	2 cut(s)	302, 693
RseI	CAYNNNNRTG	4 cut(s)	570, 720, 907, 921
SaqAI	TTAA	3 cut(s)	86, 138, 380
SatI	GCNGC	4 cut(s)	426, 579, 657, 859
Sau3AI	GATC	3 cut(s)	12, 541, 615
Sau96I	GGNCC	4 cut(s)	80, 701, 735, 779
SchI	GAGTC	2 cut(s)	349, 616
ScrFI	CCNGG	2 cut(s)	813, 855
SduI	GDGCHC	3 cut(s)	652, 675, 749
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	3 cut(s)	80, 701, 735
SmiMI	CAYNNNNRTG	4 cut(s)	570, 720, 907, 921
SmlI	CTYRAG	3 cut(s)	93, 416, 537
SmoI	CTYRAG	3 cut(s)	93, 416, 537
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	2 cut(s)	513, 973
StyD4I	CCNGG	2 cut(s)	811, 853
TaaI	ACNGT	4 cut(s)	84, 243, 933, 965
TaiI	ACGT	3 cut(s)	77, 639, 646
TaqI	TCGA	1 cut(s)	834
TasI	AATT	1 cut(s)	53
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	3 cut(s)	552, 808, 899
Tru1I	TTAA	3 cut(s)	86, 138, 380
Tru9I	TTAA	3 cut(s)	86, 138, 380
TscAI	CASTG	5 cut(s)	745, 781, 789, 844, 936
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	4 cut(s)	425, 578, 656, 858
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	5 cut(s)	39, 322, 408, 455, 704
TspRI	CASTG	5 cut(s)	745, 781, 789, 844, 936
VneI	GTGCAC	1 cut(s)	671
VpaK11BI	GGWCC	3 cut(s)	80, 701, 735
XapI	RAATTY	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	71
XspI	CTAG	2 cut(s)	513, 973
ZraI	GACGTC	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.