Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004092.1

Orthogroup ID

OG0010148

Physical Location & Seq

Genomic Coordinates Reverse (-)

200191 .. 204171

Gene Structure 3981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004092.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggctttggagattccattggagatgtggtggtgtaacaagaagtatggctacagaaaacagtcaatttggtgccttggtggttgcgaaaacaatgagaggagatggaagttggaatcttctggtgctttttgggagctttctcaatggaatactaaatacagggaaaagtttgggtttgtatttcttatttgtgcatcgggaaagagcactgatgggatactcgctgaattgaagagacgatatccaaataggcctatcactgagtttgagattgcggctgaggagcagatgaaaataacagaattacgtcttgggaaacttttctcaactaaagaaaaggttccttcaacaggcaacatgaatcccacagttgctgcaaagaaagtggaagaagatcgtgtgagcattattggaggtcatctaagtgcttcttctgaaatttcagctgtaaaaactcagactccaactcgaacccgtccacccgtcacaacccatgtcttggacgtttctagaggatctccgggtgcaggcattgaggtacgtttagaaatgtggaagggtcatcaacctcgtcctgtgtttggcgagtcagctataggcggttgggtatttcaagggtcttcaactacgaatagtgatgggcgaagtggtcagttgttgagcatagttgatgcagtgaacccaggaatatacaggataagttttaacaccagcaagtactgcccaggtgggttctttccttatgtttccattgtgtttgaaatcagggagtcacagaagttggaacattttcatgttcccctgctgctgtcacctttctcattctcaacttaccgtggaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0001558 GO:0001560 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009605 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009898 GO:0009987 GO:0009991 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016787 GO:0016810 GO:0016812 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0018130 GO:0019428 GO:0019897 GO:0019898 GO:0022607 GO:0023052 GO:0031234 GO:0031668 GO:0032870 GO:0033971 GO:0033993 GO:0034641 GO:0040008 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046483 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0051997 GO:0055086 GO:0065003 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0098552 GO:0098562 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

OHCU_decarbox Transthyretin

Protein Analysis

282

Amino Acids

31.73

Weight (kDa)

9.24

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58220 AT5G58220 AT5G58220
fragaria_vesca	FvH4_7g08020 FvH4_7g08020 FvH4_7g08020
malus_domestica	MD00G1098400.v1.1
prunus_persica	Prupe.2G109200_v2.0.a1
pyrus_communis	pycom07g06690
rosa_chinensis	RchiOBHm_Chr1g0341291
rosa_laevigata	RLG00000029080
rosa_multiflora	Rmu_sc0004092.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311920
rosa_rugosa	Rorug01G0157900.1 Rorug01G0158000.1 Rorug01G0158100.1
rosa_samantha	Rh1AG172500 Rh1BG140600 Rh1CG160600 Rh1DG172800
rosa_wichuraiana	Rw1G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	502
AciI	CCGC	2 cut(s)	278, 603
AclWI	GGATC	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	441
AfaI	GTAC	2 cut(s)	543, 722
AfiI	CCNNNNNNNGG	4 cut(s)	353, 502, 530, 584
AgsI	TTSAA	5 cut(s)	235, 351, 617, 627, 764
AjnI	CCWGG	2 cut(s)	685, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	139, 449, 596, 846
AluI	AGCT	4 cut(s)	139, 449, 596, 846
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	526
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	2 cut(s)	377, 808
ApoI	RAATTY	1 cut(s)	441
Asp700I	GAANNNNTTC	3 cut(s)	323, 342, 792
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	807
BanI	GGYRCC	1 cut(s)	72
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	212
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	364, 795
BccI	CCATC	3 cut(s)	99, 209, 635
BciT130I	CCWGG	2 cut(s)	687, 729
BciVI	GTATCC	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	513, 847
BfmI	CTRYAG	2 cut(s)	52, 597
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	3 cut(s)	279, 378, 809
BlsI	GCNGC	3 cut(s)	280, 379, 810
BmcAI	AGTACT	1 cut(s)	722
Bme1390I	CCNGG	3 cut(s)	525, 687, 729
BmiI	GGNNCC	2 cut(s)	74, 345
BmrFI	CCNGG	3 cut(s)	525, 687, 729
BmsI	GCATC	2 cut(s)	206, 664
BpiI	GAAGAC	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	525
BsaJI	CCNNGG	4 cut(s)	76, 685, 727, 838
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 448, 478
Bsc4I	CCNNNNNNNGG	4 cut(s)	353, 502, 530, 584
BseBI	CCWGG	2 cut(s)	687, 729
BseDI	CCNNGG	4 cut(s)	76, 685, 727, 838
BseLI	CCNNNNNNNGG	4 cut(s)	353, 502, 530, 584
BseMII	CTCAG	3 cut(s)	255, 273, 473
BseRI	GAGGAG	2 cut(s)	115, 299
BseXI	GCAGC	2 cut(s)	364, 795
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	524
BslI	CCNNNNNNNGG	4 cut(s)	353, 502, 530, 584
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	397, 518
BspACI	CCGC	2 cut(s)	278, 603
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	3 cut(s)	256, 274, 472
BspLI	GGNNCC	2 cut(s)	74, 345
BspPI	GGATC	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	72
BssECI	CCNNGG	4 cut(s)	76, 685, 727, 838
BssMI	GATC	2 cut(s)	397, 518
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	687, 729
Bst4CI	ACNGT	3 cut(s)	63, 373, 839
Bst6I	CTCTTC	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	723
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	4 cut(s)	264, 282, 425, 459
BstDSI	CCRYGG	1 cut(s)	838
BstENI	CCTNNNNNAGG	1 cut(s)	351
BstKTI	GATC	2 cut(s)	400, 521
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	397, 518
BstMWI	GCNNNNNNNGC	1 cut(s)	723
BstNI	CCWGG	2 cut(s)	687, 729
BstSCI	CCNGG	3 cut(s)	523, 685, 727
BstSFI	CTRYAG	2 cut(s)	52, 597
BstV1I	GCAGC	2 cut(s)	364, 795
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	256
BtgI	CCRYGG	1 cut(s)	838
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	3 cut(s)	210, 261, 684
Cac8I	GCNNGC	1 cut(s)	532
CaiI	CAGNNNCTG	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	542, 721
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	3 cut(s)	361, 497, 797
CviJI	RGCY	8 cut(s)	5, 51, 139, 256, 281, 449, 596, 846
CviKI_1	RGCY	8 cut(s)	5, 51, 139, 256, 281, 449, 596, 846
CviQI	GTAC	2 cut(s)	542, 721
DdeI	CTNAG	4 cut(s)	264, 282, 425, 459
DpnI	GATC	2 cut(s)	399, 520
DpnII	GATC	2 cut(s)	397, 518
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	685, 727
EcoRV	GATATC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	3 cut(s)	364, 500, 800
FaiI	YATR	8 cut(s)	48, 362, 498, 599, 668, 694, 747, 798
FalI	AAGNNNNNCTT	2 cut(s)	418, 450
FatI	CATG	3 cut(s)	360, 496, 796
Fnu4HI	GCNGC	3 cut(s)	279, 378, 809
Fsp4HI	GCNGC	3 cut(s)	279, 378, 809
FspBI	CTAG	2 cut(s)	513, 847
GluI	GCNGC	3 cut(s)	279, 378, 809
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	524
Hin1II	CATG	3 cut(s)	364, 500, 800
HinfI	GANTC	6 cut(s)	13, 116, 364, 463, 590, 773
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	1 cut(s)	807
Hpy166II	GTNNAC	2 cut(s)	482, 682
Hpy188I	TCNGA	2 cut(s)	439, 462
Hpy188III	TCNNGA	2 cut(s)	201, 513
Hpy8I	GTNNAC	2 cut(s)	482, 682
HpyAV	CCTTC	2 cut(s)	357, 553
HpyCH4III	ACNGT	3 cut(s)	63, 373, 839
HpyCH4IV	ACGT	3 cut(s)	310, 507, 544
HpyCH4V	TGCA	4 cut(s)	197, 380, 530, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	723
HpyF3I	CTNAG	4 cut(s)	264, 282, 425, 459
HpySE526I	ACGT	3 cut(s)	310, 507, 544
Hsp92II	CATG	3 cut(s)	364, 500, 800
Kzo9I	GATC	2 cut(s)	397, 518
LmnI	GCTCC	2 cut(s)	136, 286
Lsp1109I	GCAGC	2 cut(s)	364, 795
LweI	GCATC	2 cut(s)	206, 664
MaeI	CTAG	2 cut(s)	513, 847
MaeII	ACGT	3 cut(s)	310, 507, 544
MaeIII	GTNAC	4 cut(s)	35, 487, 774, 813
MalI	GATC	2 cut(s)	399, 520
MboI	GATC	2 cut(s)	397, 518
MboII	GAAGA	6 cut(s)	111, 247, 404, 407, 426, 615
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	4 cut(s)	66, 230, 305, 441
MlyI	GAGTC	3 cut(s)	457, 599, 782
MmeI	TCCRAC	3 cut(s)	93, 491, 765
MnlI	CCTC	6 cut(s)	93, 277, 410, 509, 532, 582
MroXI	GAANNNNTTC	3 cut(s)	323, 342, 792
MseI	TTAA	1 cut(s)	708
MslI	CAYNNNNRTG	2 cut(s)	426, 795
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	3 cut(s)	525, 687, 729
MvaI	CCWGG	2 cut(s)	687, 729
MwoI	GCNNNNNNNGC	1 cut(s)	723
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	2 cut(s)	397, 518
NlaIII	CATG	3 cut(s)	364, 500, 800
NlaIV	GGNNCC	2 cut(s)	74, 345
NmuCI	GTSAC	3 cut(s)	487, 774, 813
PceI	AGGCCT	1 cut(s)	256
PdmI	GAANNNNTTC	3 cut(s)	323, 342, 792
PfeI	GAWTC	3 cut(s)	13, 116, 364
PflMI	CCANNNNNTGG	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	280, 379, 810
PleI	GAGTC	3 cut(s)	457, 598, 781
PpsI	GAGTC	3 cut(s)	457, 598, 781
Psp6I	CCWGG	2 cut(s)	685, 727
PspGI	CCWGG	2 cut(s)	685, 727
PspN4I	GGNNCC	2 cut(s)	74, 345
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	543, 722
RsaNI	GTAC	2 cut(s)	542, 721
RseI	CAYNNNNRTG	2 cut(s)	426, 795
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	3 cut(s)	279, 378, 809
Sau3AI	GATC	2 cut(s)	397, 518
ScaI	AGTACT	1 cut(s)	722
SchI	GAGTC	3 cut(s)	457, 599, 782
ScrFI	CCNGG	3 cut(s)	525, 687, 729
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	2 cut(s)	206, 664
SfcI	CTRYAG	2 cut(s)	52, 597
SmiMI	CAYNNNNRTG	2 cut(s)	426, 795
Sse9I	AATT	4 cut(s)	66, 230, 305, 441
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	2 cut(s)	278, 603
SspMI	CTAG	2 cut(s)	513, 847
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	3 cut(s)	523, 685, 727
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	3 cut(s)	63, 373, 839
TaiI	ACGT	3 cut(s)	313, 510, 547
TaqI	TCGA	1 cut(s)	472
TasI	AATT	4 cut(s)	66, 230, 305, 441
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	3 cut(s)	13, 116, 364
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	3 cut(s)	217, 268, 684
TseFI	GTSAC	3 cut(s)	487, 774, 813
TseI	GCWGC	2 cut(s)	377, 808
Tsp45I	GTSAC	3 cut(s)	487, 774, 813
TspDTI	ATGAA	3 cut(s)	308, 377, 785
TspRI	CASTG	3 cut(s)	217, 268, 684
Van91I	CCANNNNNTGG	1 cut(s)	502
XagI	CCTNNNNNAGG	1 cut(s)	351
XapI	RAATTY	1 cut(s)	441
XbaI	TCTAGA	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XmnI	GAANNNNTTC	3 cut(s)	323, 342, 792
XspI	CTAG	2 cut(s)	513, 847
ZrmI	AGTACT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.