Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010148

Physical Location & Seq

Genomic Coordinates Forward (+)

5980610 .. 5983790

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGATTGAAATTTGAGGAGGAGGACTTCTTAGCTTGCTGCGCAAGCACCAAATTCGCCAAAGAAATGGCGGAGGCGTCCCCTTTCTCATCTCTCGACGAAGCTGTGACTGCCGCCAGAGACATTTGGTTCAACAAGGTCGATGTCAGTGGCTGGCTCCAATCGTTCTCCGCTCATCCTCAAATCGGAAACTCGCCTTCGCCTTCTTCTCACTCCACCTCTGCTCAGTGGAGTAAGGGAGAGCAGGCAACTGCTGTAGCAACTGCCACTAGTTCTAGCTTGCAGGAACTGGCTGAATGGAATGCTAAATACCGGCAGAAGTTTGGTTTTGTATTTCTTATTTGTGCATCTGGAAAGAGTTCTGATGGGATACTTGCTGAGTTGAAGAAACGATATCCAAACAGGCCAATAGTTGAGTTCGAGATTGCAGCTCAAGAGCAGATGAAAATAACAGAGCTACGCCTTGCGAAGCTCTTTTCAGCAAAAGAAAATGTTACTTCCACAGGCAACAAGAATCCCACAATTGTTGCAAAGAAAGCGGAAGAAGATCGTGTGAGCATTATTGGAGGGCATTTAACTGCAACTGCTTCTGAAGCTTCATCAGTAAAAACTTCTCAAGCTCCAACTCGAACCCGTCCACCCATCACAACCCATGTCTTGGATGTTTCTCGAGGATCTCCAGGTGCTGGAATTGAAGTGTGTTTAGAAATGTGGAAGGGTGTTCAACCTCGTCCGGTGTTTGGCGAGTCAAATGCAGGTGGTTGGGTATTTCAAGGGTCTTCGACTACAGATAATGATGGGCGAAGTGGTCAATTGATGAGCATCGTTGATGCAGTGAACCCAGGCATATACAGGATAAACTTTAACACAGGTAAGTACTGCCCAAGCGGGTTCTTCCCTTATGTTTCTATCGTGTTTGAGATCAGAGAGTCACAGAAATTGGAACATTTTCATGTTCCTCTGCTGCTGTCGCCTTTCTCATTCACAACATACCGTGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0001558 GO:0001560 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009605 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009898 GO:0009987 GO:0009991 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016787 GO:0016810 GO:0016812 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0018130 GO:0019428 GO:0019897 GO:0019898 GO:0022607 GO:0023052 GO:0031234 GO:0031668 GO:0032870 GO:0033971 GO:0033993 GO:0034641 GO:0040008 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046483 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0051997 GO:0055086 GO:0065003 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0098552 GO:0098562 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

OHCU_decarbox Transthyretin

Protein Analysis

335

Amino Acids

36.38

Weight (kDa)

7.01

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58220 AT5G58220 AT5G58220
fragaria_vesca	FvH4_7g08020 FvH4_7g08020 FvH4_7g08020
malus_domestica	MD00G1098400.v1.1
prunus_persica	Prupe.2G109200_v2.0.a1
pyrus_communis	pycom07g06690
rosa_chinensis	RchiOBHm_Chr1g0341291
rosa_laevigata	RLG00000029080
rosa_multiflora	Rmu_sc0004092.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311920
rosa_rugosa	Rorug01G0157900.1 Rorug01G0158000.1 Rorug01G0158100.1
rosa_samantha	Rh1AG172500 Rh1BG140600 Rh1CG160600 Rh1DG172800
rosa_wichuraiana	Rw1G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	746
Acc16I	TGCGCA	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	746
AccB7I	CCANNNNNTGG	2 cut(s)	658, 686
AccBSI	CCGCTC	1 cut(s)	173
AciI	CCGC	5 cut(s)	71, 114, 171, 539, 888
AclWI	GGATC	1 cut(s)	682
AcsI	RAATTY	2 cut(s)	11, 53
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	878
AfiI	CCNNNNNNNGG	4 cut(s)	185, 658, 686, 740
AgsI	TTSAA	6 cut(s)	10, 133, 385, 695, 725, 773
AhlI	ACTAGT	1 cut(s)	269
AjnI	CCWGG	2 cut(s)	679, 841
AluBI	AGCT	9 cut(s)	35, 104, 279, 431, 457, 472, 596, 620, 1002
AluI	AGCT	9 cut(s)	35, 104, 279, 431, 457, 472, 596, 620, 1002
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	682
AlwNI	CAGNNNCTG	3 cut(s)	153, 289, 686
Ama87I	CYCGRG	1 cut(s)	669
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	3 cut(s)	39, 428, 964
ApoI	RAATTY	2 cut(s)	11, 53
Asp700I	GAANNNNTTC	2 cut(s)	358, 948
AspLEI	GCGC	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	669
BbsI	GAAGAC	1 cut(s)	771
BbvI	GCAGC	3 cut(s)	26, 440, 951
BccI	CCATC	3 cut(s)	359, 650, 791
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 734, 768
BciT130I	CCWGG	2 cut(s)	681, 843
BciVI	GTATCC	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	3 cut(s)	270, 276, 1003
BfmI	CTRYAG	2 cut(s)	255, 786
BfuAI	ACCTGC	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	363
BisI	GCNGC	4 cut(s)	40, 114, 429, 965
BlsI	GCNGC	4 cut(s)	41, 115, 430, 966
BmcAI	AGTACT	1 cut(s)	878
Bme1390I	CCNGG	2 cut(s)	681, 843
BmeT110I	CYCGRG	1 cut(s)	669
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	681, 843
BmsI	GCATC	3 cut(s)	356, 820, 831
BpiI	GAAGAC	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	663
BpuEI	CTTGAG	2 cut(s)	417, 600
BsaBI	GATNNNNATC	1 cut(s)	821
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	841, 994
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 658, 686, 740
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	821
BseBI	CCWGG	2 cut(s)	681, 843
BseDI	CCNNGG	2 cut(s)	841, 994
BseGI	GGATG	2 cut(s)	175, 667
BseJI	GATNNNNATC	1 cut(s)	821
BseLI	CCNNNNNNNGG	4 cut(s)	185, 658, 686, 740
BseMII	CTCAG	2 cut(s)	239, 369
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	2 cut(s)	32, 35
BseXI	GCAGC	3 cut(s)	26, 440, 951
BshFI	GGCC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	669
BsiSI	CCGG	2 cut(s)	313, 734
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	4 cut(s)	185, 658, 686, 740
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	406
BsoBI	CYCGRG	1 cut(s)	669
Bsp143I	GATC	3 cut(s)	547, 674, 921
BspACI	CCGC	5 cut(s)	71, 114, 171, 539, 888
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	2 cut(s)	238, 370
BspLI	GGNNCC	1 cut(s)	158
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	1 cut(s)	682
BsrBI	CCGCTC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	841, 994
BssMI	GATC	3 cut(s)	547, 674, 921
BssNI	GRCGYC	1 cut(s)	77
Bst2UI	CCWGG	2 cut(s)	681, 843
Bst4CI	ACNGT	1 cut(s)	995
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	5 cut(s)	37, 46, 155, 246, 281
BstDEI	CTNAG	3 cut(s)	31, 225, 378
BstDSI	CCRYGG	1 cut(s)	994
BstF5I	GGATG	2 cut(s)	175, 667
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	3 cut(s)	550, 677, 924
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	547, 674, 921
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 45, 110, 536, 593, 970
BstNI	CCWGG	2 cut(s)	681, 843
BstSCI	CCNGG	2 cut(s)	679, 841
BstSFI	CTRYAG	2 cut(s)	255, 786
BstV1I	GCAGC	3 cut(s)	26, 440, 951
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	1 cut(s)	674
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	994
BtsCI	GGATG	2 cut(s)	175, 667
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	3 cut(s)	154, 233, 840
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	5 cut(s)	37, 46, 155, 246, 281
CaiI	CAGNNNCTG	3 cut(s)	153, 289, 686
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	312
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	877
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	2 cut(s)	653, 953
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	3 cut(s)	31, 225, 378
DpnI	GATC	3 cut(s)	549, 676, 923
DpnII	GATC	3 cut(s)	547, 674, 921
EciI	GGCGGA	1 cut(s)	86
Eco32I	GATATC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	669
EcoRII	CCWGG	2 cut(s)	679, 841
EcoRV	GATATC	1 cut(s)	395
FaeI	CATG	2 cut(s)	656, 956
FaiI	YATR	6 cut(s)	654, 848, 850, 903, 954, 991
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	2 cut(s)	652, 952
FauI	CCCGC	1 cut(s)	881
Fnu4HI	GCNGC	4 cut(s)	40, 114, 429, 965
FokI	GGATG	2 cut(s)	162, 674
Fsp4HI	GCNGC	4 cut(s)	40, 114, 429, 965
FspBI	CTAG	3 cut(s)	270, 276, 1003
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	40, 114, 429, 965
GsuI	CTGGAG	1 cut(s)	663
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	2 cut(s)	313, 734
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	656, 956
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	3 cut(s)	514, 746, 929
HpaII	CCGG	2 cut(s)	313, 734
Hpy166II	GTNNAC	2 cut(s)	638, 838
Hpy188I	TCNGA	4 cut(s)	188, 364, 592, 926
Hpy188III	TCNNGA	5 cut(s)	95, 351, 421, 434, 669
Hpy8I	GTNNAC	2 cut(s)	638, 838
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	207, 213, 709
HpyCH4III	ACNGT	1 cut(s)	995
HpyCH4V	TGCA	7 cut(s)	283, 347, 428, 530, 581, 755, 833
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 45, 110, 536, 593, 970
HpyF3I	CTNAG	3 cut(s)	31, 225, 378
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	656, 956
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	547, 674, 921
LmnI	GCTCC	2 cut(s)	162, 625
Lsp1109I	GCAGC	3 cut(s)	26, 440, 951
LweI	GCATC	3 cut(s)	356, 820, 831
MaeI	CTAG	3 cut(s)	270, 276, 1003
MaeIII	GTNAC	3 cut(s)	106, 493, 930
MalI	GATC	3 cut(s)	549, 676, 923
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	3 cut(s)	547, 674, 921
MboII	GAAGA	6 cut(s)	198, 397, 554, 557, 771, 886
MfeI	CAATTG	2 cut(s)	522, 812
MflI	RGATCY	1 cut(s)	674
MluCI	AATT	6 cut(s)	11, 53, 522, 690, 812, 938
MlyI	GAGTC	2 cut(s)	755, 938
MmeI	TCCRAC	1 cut(s)	647
MroXI	GAANNNNTTC	2 cut(s)	358, 948
MseI	TTAA	2 cut(s)	575, 864
MslI	CAYNNNNRTG	1 cut(s)	951
MspI	CCGG	2 cut(s)	313, 734
MspR9I	CCNGG	2 cut(s)	681, 843
MunI	CAATTG	2 cut(s)	522, 812
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	2 cut(s)	681, 843
MwoI	GCNNNNNNNGC	6 cut(s)	41, 45, 110, 536, 593, 970
NdeII	GATC	3 cut(s)	547, 674, 921
NlaIII	CATG	2 cut(s)	656, 956
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	2 cut(s)	106, 930
NsbI	TGCGCA	1 cut(s)	43
PaeR7I	CTCGAG	1 cut(s)	669
PaqCI	CACCTGC	1 cut(s)	746
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	2 cut(s)	358, 948
PfeI	GAWTC	1 cut(s)	514
PflMI	CCANNNNNTGG	2 cut(s)	658, 686
PkrI	GCNGC	4 cut(s)	41, 115, 430, 966
PleI	GAGTC	2 cut(s)	754, 937
PpsI	GAGTC	2 cut(s)	754, 937
Psp6I	CCWGG	2 cut(s)	679, 841
PspGI	CCWGG	2 cut(s)	679, 841
PspN4I	GGNNCC	1 cut(s)	158
PstNI	CAGNNNCTG	3 cut(s)	153, 289, 686
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
RseI	CAYNNNNRTG	1 cut(s)	951
SaqAI	TTAA	2 cut(s)	575, 864
SatI	GCNGC	4 cut(s)	40, 114, 429, 965
Sau3AI	GATC	3 cut(s)	547, 674, 921
ScaI	AGTACT	1 cut(s)	878
SchI	GAGTC	2 cut(s)	755, 938
ScrFI	CCNGG	2 cut(s)	681, 843
SfaNI	GCATC	3 cut(s)	356, 820, 831
SfcI	CTRYAG	2 cut(s)	255, 786
Sfr274I	CTCGAG	1 cut(s)	669
SlaI	CTCGAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	951
SmlI	CTYRAG	3 cut(s)	432, 615, 669
SmoI	CTYRAG	3 cut(s)	432, 615, 669
SpeI	ACTAGT	1 cut(s)	269
Sse9I	AATT	6 cut(s)	11, 53, 522, 690, 812, 938
SsiI	CCGC	5 cut(s)	71, 114, 171, 539, 888
SspMI	CTAG	3 cut(s)	270, 276, 1003
StyD4I	CCNGG	2 cut(s)	679, 841
TaaI	ACNGT	1 cut(s)	995
TaqI	TCGA	6 cut(s)	96, 141, 420, 628, 670, 782
TasI	AATT	6 cut(s)	11, 53, 522, 690, 812, 938
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	575, 864
Tru9I	TTAA	2 cut(s)	575, 864
TscAI	CASTG	3 cut(s)	154, 233, 840
TseFI	GTSAC	2 cut(s)	106, 930
TseI	GCWGC	3 cut(s)	39, 428, 964
Tsp45I	GTSAC	2 cut(s)	106, 930
TspDTI	ATGAA	3 cut(s)	458, 588, 941
TspRI	CASTG	3 cut(s)	154, 233, 840
Van91I	CCANNNNNTGG	2 cut(s)	658, 686
XapI	RAATTY	2 cut(s)	11, 53
XhoI	CTCGAG	1 cut(s)	669
XmnI	GAANNNNTTC	2 cut(s)	358, 948
XspI	CTAG	3 cut(s)	270, 276, 1003
ZrmI	AGTACT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.