Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010148

Physical Location & Seq

Genomic Coordinates Reverse (-)

34544451 .. 34549410

Gene Structure 4960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGCTTTGGAGATTTCCATTGGAGATGTGGTGCTGTAATAAGAGGTTTGGGACTTGAGAATTTGATAGAAGGGGATATTGCTTTGTTGGGGAAACAGCTTTGGAGATTCCATTGGAGATGTGGTGGTGTAACAAGAAGTATGGCTACAGAAAACAGTCAATTTGGTGCCTTGGTGGTTGCGAAAACTTATGAGAGGAGATGGAAGTTCAAATCTTCTGGTGCTTTTTGGTTGCTTCTTTTTTGTGGCGGAAGTTTTAGAAAAGCGGGGTTAGCTGGGAGATTGCAGCAGAATCCAGTTGTGTGCCATCATAGGTGGAGCAAAGGAGAGCAGTCAACTGCTTTTGCAACTGCTACTAGTTCAAGCTTACAGGAGCTCTCTCAATGGAATACTAAATACAGGGAAAAGTTTGGGTTTGTATTTCTCATTTGTGCATCGGGAAAGAGCACTGATGGGATACTCGCTGAATTGAAGGACAGAGCAGGGGTGGGGAGACGATATCCAAATAGGCCTATCGTTGAGTTTGAGATTGCAGCTGAGGAGCAGATGAAAATAACAGAATTACGTCTTGGGAAACTTTTCTCAACTAAAGAAAAGGTTCCTTCCACAGGCAACAGGAATCCCACAGTTGCTGCAAAGAAAGTGGAAGAAGATCGTGTGAGCATTATTGGAGGTCATCTAAGTGCTTCTTCTGAAATTTCAGCTGTAAAAACTCAGACTCCAACTCGAACCCGTCCACCCATCACAACCCATGTCTTGGATGTTTCTCAAGGATCTCCAGGTGCAGGCATTGAGGTATGTTTAGAAATGTGGAAGGGTCATCAACCTCGTCCTGTGTTTGGGGAGTCAGCTATAGGCGGTTGGGTATTTCAAGGGTCTTCAACTACGAATAGTGATGGGCGAAGTGGTCAGTTGTTGAGCATAGTTGATGCAGTGAACCCAGGGATATACAGGATAAGTTTTAACACCGGCAAGTACTGCCCAGGTGGGTTCTTTCCTTATGTTTCCATTGTGTTTGAAATCAGGGAGTCACAGAAGTTGGAACATTTTCATGTTCCTCTGCTGCTGTCACCTTTCTCATTCTCAACTTACCGTGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0001558 GO:0001560 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009605 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009898 GO:0009987 GO:0009991 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016787 GO:0016810 GO:0016812 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0018130 GO:0019428 GO:0019897 GO:0019898 GO:0022607 GO:0023052 GO:0031234 GO:0031668 GO:0032870 GO:0033971 GO:0033993 GO:0034641 GO:0040008 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046483 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0051997 GO:0055086 GO:0065003 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0098552 GO:0098562 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

OHCU_decarbox Transthyretin

Protein Analysis

367

Amino Acids

40.55

Weight (kDa)

9.58

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OHCU_decarbox	PF09349	104 - 190	9.1e-18	OHCU decarboxylase
Transthyretin	PF00576	248 - 366	2.6e-30	HIUase/Transthyretin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58220 AT5G58220 AT5G58220
fragaria_vesca	FvH4_7g08020 FvH4_7g08020 FvH4_7g08020
malus_domestica	MD00G1098400.v1.1
prunus_persica	Prupe.2G109200_v2.0.a1
pyrus_communis	pycom07g06690
rosa_chinensis	RchiOBHm_Chr1g0341291
rosa_laevigata	RLG00000029080
rosa_multiflora	Rmu_sc0004092.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311920
rosa_rugosa	Rorug01G0157900.1 Rorug01G0158000.1 Rorug01G0158100.1
rosa_samantha	Rh1AG172500 Rh1BG140600 Rh1CG160600 Rh1DG172800
rosa_wichuraiana	Rw1G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	757
AciI	CCGC	3 cut(s)	249, 266, 858
AclWI	GGATC	1 cut(s)	781
AcsI	RAATTY	2 cut(s)	61, 696
AfaI	GTAC	1 cut(s)	977
AfiI	CCNNNNNNNGG	4 cut(s)	608, 757, 785, 839
AgsI	TTSAA	6 cut(s)	211, 363, 472, 872, 882, 1019
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	3 cut(s)	778, 940, 982
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AluBI	AGCT	8 cut(s)	100, 275, 366, 376, 536, 704, 851, 1101
AluI	AGCT	8 cut(s)	100, 275, 366, 376, 536, 704, 851, 1101
Alw21I	GWGCWC	2 cut(s)	378, 449
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	1 cut(s)	781
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	4 cut(s)	286, 533, 632, 1063
ApoI	RAATTY	2 cut(s)	61, 696
Asp700I	GAANNNNTTC	3 cut(s)	578, 597, 1047
AsuHPI	GGTGA	1 cut(s)	1062
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	378
BarI	GAAGNNNNNNTAC	2 cut(s)	130, 162
BbsI	GAAGAC	1 cut(s)	870
Bbv12I	GWGCWC	2 cut(s)	378, 449
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	298, 545, 619, 1050
BccI	CCATC	5 cut(s)	195, 315, 446, 749, 890
BciT130I	CCWGG	3 cut(s)	780, 942, 984
BciVI	GTATCC	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	487
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	2 cut(s)	357, 1102
BfmI	CTRYAG	2 cut(s)	147, 852
BfuI	GTATCC	1 cut(s)	450
BisI	GCNGC	4 cut(s)	287, 534, 633, 1064
BlsI	GCNGC	4 cut(s)	288, 535, 634, 1065
BmcAI	AGTACT	1 cut(s)	977
Bme1390I	CCNGG	3 cut(s)	780, 942, 984
BmiI	GGNNCC	2 cut(s)	169, 600
BmrFI	CCNGG	3 cut(s)	780, 942, 984
BmsI	GCATC	2 cut(s)	443, 919
BpiI	GAAGAC	1 cut(s)	870
BpmI	CTGGAG	1 cut(s)	762
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	2 cut(s)	77, 753
BsaJI	CCNNGG	5 cut(s)	171, 940, 941, 982, 1093
BsaXI	ACNNNNNCTCC	6 cut(s)	16, 46, 109, 139, 703, 733
Bsc4I	CCNNNNNNNGG	4 cut(s)	608, 757, 785, 839
Bse118I	RCCGGY	1 cut(s)	968
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	3 cut(s)	780, 942, 984
BseDI	CCNNGG	5 cut(s)	171, 940, 941, 982, 1093
BseGI	GGATG	1 cut(s)	766
BseLI	CCNNNNNNNGG	4 cut(s)	608, 757, 785, 839
BseMII	CTCAG	2 cut(s)	528, 728
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	211, 554
BseXI	GCAGC	4 cut(s)	298, 545, 619, 1050
BseYI	CCCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	804
BshFI	GGCC	1 cut(s)	511
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	378, 449
BsiSI	CCGG	1 cut(s)	969
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	4 cut(s)	608, 757, 785, 839
BsmAI	GTCTC	1 cut(s)	487
BsmBI	CGTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	378, 449
Bsp143I	GATC	2 cut(s)	652, 773
BspACI	CCGC	3 cut(s)	249, 266, 858
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	2 cut(s)	529, 727
BspLI	GGNNCC	2 cut(s)	169, 600
BspPI	GGATC	1 cut(s)	781
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	968
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	968
BssECI	CCNNGG	5 cut(s)	171, 940, 941, 982, 1093
BssMI	GATC	2 cut(s)	652, 773
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	3 cut(s)	780, 942, 984
Bst4CI	ACNGT	3 cut(s)	158, 628, 1094
BstAPI	GCANNNNNTGC	1 cut(s)	978
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	3 cut(s)	537, 680, 714
BstDSI	CCRYGG	1 cut(s)	1093
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	1 cut(s)	766
BstKTI	GATC	2 cut(s)	655, 776
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	2 cut(s)	652, 773
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 978
BstNI	CCWGG	3 cut(s)	780, 942, 984
BstSCI	CCNGG	3 cut(s)	778, 940, 982
BstSFI	CTRYAG	2 cut(s)	147, 852
BstV1I	GCAGC	4 cut(s)	298, 545, 619, 1050
BstV2I	GAAGAC	1 cut(s)	870
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	511
BtgI	CCRYGG	1 cut(s)	1093
BtsCI	GGATG	1 cut(s)	766
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	2 cut(s)	447, 939
Cac8I	GCNNGC	1 cut(s)	787
CaiI	CAGNNNCTG	1 cut(s)	632
Cfr10I	RCCGGY	1 cut(s)	968
Csp6I	GTAC	1 cut(s)	976
CspCI	CAANNNNNGTGG	2 cut(s)	624, 659
CviAII	CATG	2 cut(s)	752, 1052
CviQI	GTAC	1 cut(s)	976
DdeI	CTNAG	3 cut(s)	537, 680, 714
DpnI	GATC	2 cut(s)	654, 775
DpnII	GATC	2 cut(s)	652, 773
EciI	GGCGGA	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	500
Eco53kI	GAGCTC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	376
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoRII	CCWGG	3 cut(s)	778, 940, 982
EcoRV	GATATC	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	487
FaeI	CATG	2 cut(s)	755, 1055
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	751, 1051
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	287, 534, 633, 1064
FokI	GGATG	1 cut(s)	773
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	4 cut(s)	287, 534, 633, 1064
FspBI	CTAG	2 cut(s)	357, 1102
GluI	GCNGC	4 cut(s)	287, 534, 633, 1064
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	1 cut(s)	511
HapII	CCGG	1 cut(s)	969
Hin1II	CATG	2 cut(s)	755, 1055
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	6 cut(s)	108, 292, 619, 718, 845, 1028
HpaII	CCGG	1 cut(s)	969
HphI	GGTGA	1 cut(s)	1062
Hpy166II	GTNNAC	3 cut(s)	336, 737, 937
Hpy188I	TCNGA	2 cut(s)	694, 717
Hpy188III	TCNNGA	1 cut(s)	438
Hpy8I	GTNNAC	3 cut(s)	336, 737, 937
HpyAV	CCTTC	4 cut(s)	65, 466, 612, 808
HpyCH4III	ACNGT	3 cut(s)	158, 628, 1094
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	7 cut(s)	286, 347, 434, 533, 635, 785, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 978
HpyF3I	CTNAG	3 cut(s)	537, 680, 714
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	2 cut(s)	755, 1055
Kzo9I	GATC	2 cut(s)	652, 773
LmnI	GCTCC	3 cut(s)	318, 373, 541
Lsp1109I	GCAGC	4 cut(s)	298, 545, 619, 1050
LweI	GCATC	2 cut(s)	443, 919
MaeI	CTAG	2 cut(s)	357, 1102
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	3 cut(s)	130, 1029, 1068
MalI	GATC	2 cut(s)	654, 775
MboI	GATC	2 cut(s)	652, 773
MboII	GAAGA	5 cut(s)	207, 659, 662, 681, 870
MflI	RGATCY	1 cut(s)	773
MhlI	GDGCHC	2 cut(s)	378, 449
MluCI	AATT	5 cut(s)	61, 161, 467, 560, 696
MlyI	GAGTC	3 cut(s)	712, 854, 1037
MmeI	TCCRAC	2 cut(s)	746, 1020
MnlI	CCTC	7 cut(s)	38, 189, 532, 665, 787, 837, 1068
MroXI	GAANNNNTTC	3 cut(s)	578, 597, 1047
MseI	TTAA	1 cut(s)	963
MslI	CAYNNNNRTG	2 cut(s)	681, 1050
MspA1I	CMGCKG	2 cut(s)	536, 704
MspI	CCGG	1 cut(s)	969
MspR9I	CCNGG	3 cut(s)	780, 942, 984
MvaI	CCWGG	3 cut(s)	780, 942, 984
MwoI	GCNNNNNNNGC	2 cut(s)	272, 978
NdeII	GATC	2 cut(s)	652, 773
NlaIII	CATG	2 cut(s)	755, 1055
NlaIV	GGNNCC	2 cut(s)	169, 600
NmuCI	GTSAC	2 cut(s)	1029, 1068
PasI	CCCWGGG	1 cut(s)	941
PceI	AGGCCT	1 cut(s)	511
PdmI	GAANNNNTTC	3 cut(s)	578, 597, 1047
PfeI	GAWTC	3 cut(s)	108, 292, 619
PflMI	CCANNNNNTGG	1 cut(s)	757
PkrI	GCNGC	4 cut(s)	288, 535, 634, 1065
PleI	GAGTC	3 cut(s)	712, 853, 1036
PpsI	GAGTC	3 cut(s)	712, 853, 1036
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	3 cut(s)	778, 940, 982
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	3 cut(s)	778, 940, 982
PspN4I	GGNNCC	2 cut(s)	169, 600
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	773
PvuII	CAGCTG	2 cut(s)	536, 704
RsaI	GTAC	1 cut(s)	977
RsaNI	GTAC	1 cut(s)	976
RseI	CAYNNNNRTG	2 cut(s)	681, 1050
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	963
SatI	GCNGC	4 cut(s)	287, 534, 633, 1064
Sau3AI	GATC	2 cut(s)	652, 773
ScaI	AGTACT	1 cut(s)	977
SchI	GAGTC	3 cut(s)	712, 854, 1037
ScrFI	CCNGG	3 cut(s)	780, 942, 984
SduI	GDGCHC	2 cut(s)	378, 449
SfaNI	GCATC	2 cut(s)	443, 919
SfcI	CTRYAG	2 cut(s)	147, 852
SmiMI	CAYNNNNRTG	2 cut(s)	681, 1050
SmlI	CTYRAG	2 cut(s)	56, 768
SmoI	CTYRAG	2 cut(s)	56, 768
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	5 cut(s)	61, 161, 467, 560, 696
SseBI	AGGCCT	1 cut(s)	511
SsiI	CCGC	3 cut(s)	249, 266, 858
SspMI	CTAG	2 cut(s)	357, 1102
SstI	GAGCTC	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	511
StyD4I	CCNGG	3 cut(s)	778, 940, 982
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	3 cut(s)	158, 628, 1094
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	1 cut(s)	727
TasI	AATT	5 cut(s)	61, 161, 467, 560, 696
TatI	WGTACW	1 cut(s)	975
TfiI	GAWTC	3 cut(s)	108, 292, 619
Tru1I	TTAA	1 cut(s)	963
Tru9I	TTAA	1 cut(s)	963
TscAI	CASTG	2 cut(s)	454, 939
TseFI	GTSAC	2 cut(s)	1029, 1068
TseI	GCWGC	4 cut(s)	286, 533, 632, 1063
Tsp45I	GTSAC	2 cut(s)	1029, 1068
TspDTI	ATGAA	2 cut(s)	563, 1040
TspRI	CASTG	2 cut(s)	454, 939
Van91I	CCANNNNNTGG	1 cut(s)	757
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	2 cut(s)	61, 696
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 119
XmnI	GAANNNNTTC	3 cut(s)	578, 597, 1047
XspI	CTAG	2 cut(s)	357, 1102
ZrmI	AGTACT	1 cut(s)	977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.